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A

aATTRIBUTEPROJECTIONID - Static variable in class edu.unh.sdb.mdb.Table
 
aAXIS - Static variable in class edu.unh.sdb.mdb.Table
 
absNormal - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
accessHistory - Variable in class edu.unh.sdb.datasource.BlockManager
 
aCOMPONENTPOSITION - Static variable in class edu.unh.sdb.mdb.Table
 
aCOMPOSITEPOSITION - Static variable in class edu.unh.sdb.mdb.Table
 
activate() - Method in class edu.unh.sdb.datasource.AliasDataSource
 
activate() - Method in class edu.unh.sdb.datasource.ARRSCellCopyDS
 
activate() - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Construct a ARRSCellDataSource with the given base bounds and number of attributes ***************** rdb delete **************** public ARRSCellDataSource( ISBounds basebounds, RecordDescriptor recordDesc ) { super( basebounds, recordDesc ); this.pointDS = null; this.tree = null; this.subtree = null; }
activate() - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Overrides from DataSource.
activate() - Method in class edu.unh.sdb.datasource.BinaryFileDataSource
Open the binary data file for this datasource.
activate() - Method in class edu.unh.sdb.datasource.BlockCacheDataSource
This method should be overridden by child classes to create the cache object.
activate() - Method in class edu.unh.sdb.datasource.BlockedDataSource
Activate() method call its component DataSource to activate itself
activate() - Method in class edu.unh.sdb.datasource.BlockListCacheDataSource
Calls activate() for the underlying datasource, and creates the actual cache, which allocates memory for the CacheBlock.
activate() - Method in class edu.unh.sdb.datasource.BufferedOneDDataSink
 
activate() - Method in class edu.unh.sdb.datasource.CacheDataSource
Calls activate() for the datasource backing this cache.
activate() - Method in class edu.unh.sdb.datasource.ChomboDataSource
Activates the data source by opening the currently addressed file.
activate() - Method in class edu.unh.sdb.datasource.ChunkedDataSource
Open the binary data file for this datasource.
activate() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Calls the activate method of all component datasources.
activate() - Method in class edu.unh.sdb.datasource.DataSink
 
activate() - Method in class edu.unh.sdb.datasource.DataSource
The DataSource will perform any initialization required in order to begin reading/processing data.
activate() - Method in class edu.unh.sdb.datasource.DynamicChunking
Activates the cache for the given memory and block size.
activate() - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
 
activate() - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Open the server socket on the client side.
activate() - Method in class edu.unh.sdb.datasource.LRUCacheDataSource
Calls activate() for the underlying datasource, and creates the actual cache, which allocates memory for the CacheBlocks.
activate() - Method in class edu.unh.sdb.datasource.MRDataSource
 
activate() - Method in class edu.unh.sdb.datasource.MultiBlockCacheDataSource
Calls activate() for the underlying datasource, and creates the actual cache, which allocates memory for the CacheBlocks.
activate() - Method in class edu.unh.sdb.datasource.OneDDataSink
 
activate() - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Activate() method call its component DataSource to activate itself
activate() - Method in class edu.unh.sdb.datasource.RegCellDataSource
The DataSource will perform any initialization required in order to begin reading/processing data.
activate() - Method in class edu.unh.sdb.datasource.RemoteBFDS
Open the binary data file for this datasource.
activate() - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Open the server socket on the client side.
activate() - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Open the server socket on the client side.
activate() - Method in class edu.unh.sdb.datasource.StatsDataSource
 
activate() - Method in class edu.unh.sdb.datasource.TextFileDataSource
Reads the contents of the file into an array.
activate() - Method in class edu.unh.sdb.datasource.ThreadedBlockCacheDataSource
Calls activate() for the underlying datasource, and creates the actual cache, which allocates memory for the CacheBlock.
activate() - Method in class edu.unh.sdb.datasource.ThreadedSliceCacheDataSource
Calls activate() for the underlying datasource, and creates the actual cache, which allocates memory for the CacheBlocks.
activate() - Method in class edu.unh.sdb.datasource.UniBlockCacheDataSource
Calls activate() for the underlying datasource, and creates the actual cache, which allocates memory for the CacheBlock.
activate() - Method in class edu.unh.sdb.datasource.VRDataSource
Activate this datasource
activate() - Method in class edu.unh.sdb.lattice.Lattice
 
activate() - Method in class edu.unh.sdb.lattice.MRLattice
 
activate() - Method in class edu.unh.sdb.lattice.RectilinearTopology
 
activate() - Method in class edu.unh.sdb.lattice.Topology
 
activate() - Method in class edu.unh.sdb.lattice.UnstructuredSplitterTopology
 
activate() - Method in class edu.unh.sdb.lattice.UnstructuredTopology
 
add(EulerAngles.Angle, double) - Method in class edu.unh.sdb.common.EulerAngles
 
add(DataBlock) - Method in class edu.unh.sdb.datasource.DataBlockCollection
 
add(DataSource) - Method in class edu.unh.sdb.datasource.DataSourceCollection
Add a DataSource to the end of the list
add(IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
For each axis of this IndexSpaceID, add the value of the corresponding axis of the parameter.
add(int, int) - Method in class edu.unh.sdb.datasource.IndexSpaceID
For the specified axis of this IndexSpaceID, add specified value.
add(Lattice) - Method in class edu.unh.sdb.lattice.LatticeCollection
Add a Lattice to the end of the list
add(Point) - Method in class edu.unh.sdb.lattice.Point
For each axis of this Point, add the value of the corresponding axis of the parameter.
addChild(ArrayList, ARRSNode) - Method in class edu.unh.sdb.datasource.ARRSInternalNode
Add a node as a child of this node.
addComponent(String) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
adds DataSource named by the String to the list of components with the bounds implied to be that of the datasource named by the String.
addComponent(String, ISBounds) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
adds DataSource named by the String to the list of components with the bounds specified.
addField(String, String) - Method in class edu.unh.sdb.common.RecordDescriptorBuilder
adds a field name and type to the list for the pending record descriptor
addFieldName(String) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Adds a field name to the current record descriptor
addFieldType(String) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Adds a field type to the current record descriptor
addKdNode(int, int[]) - Method in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
addLattice(Lattice) - Method in class edu.unh.sdb.lattice.XLDLReader
Adds a new lattice to the existing collection
addLeaf(int, int[], int[]) - Method in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
Abstract method to create a leaf node with data.
addLeaf(int, int[], int[]) - Method in class edu.unh.sdb.ARRSTreeBuilder.ARRSCopyModelBuilder
 
addMap(int, int) - Method in class edu.unh.sdb.datasource.SparseDataSource
addMap - add another block map entry
addNode(ArrayList<ARRSNode>, ARRSNode, int, int, int) - Method in class edu.unh.sdb.datasource.ARRSInternalNode
Add a node as a child of this node.
addNode(ARRSNode, int) - Method in class edu.unh.sdb.datasource.ARRSTree
Add a node into an ARRS tree
addNtreeNode(int, int[]) - Method in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
addToLevel(int, DataSource, File) - Method in class edu.unh.sdb.datasource.MRDataSource
addToLevel( ds, level )
addUserType(UserType) - Method in class edu.unh.sdb.datasource.XTDLReader
adds a completed type to the TypeTable
addWorkSpace(String, WorkSpace) - Method in class edu.unh.sdb.common.WorkSpace
add the name of the AliasDataSource or ForeignReferenceDataSource to the look up table
aDESTINATION - Static variable in class edu.unh.sdb.mdb.Table
 
aDSID - Static variable in class edu.unh.sdb.mdb.Table
 
AJDataSourceBuilder - Class in edu.unh.sdb.datasource
Manufactures Logical AttributeJoinDataSource objects.
AJDataSourceBuilder(DataSourceCollection, String) - Constructor for class edu.unh.sdb.datasource.AJDataSourceBuilder
Default Constructor sets the bounds and recordDesc members to default values.
AlarmThreadStart() - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Method for restarting Alarm thread with different sleepTime quantum.
AliasDataSource - Class in edu.unh.sdb.datasource
 
AliasDataSource(String, String, String, DataSource) - Constructor for class edu.unh.sdb.datasource.AliasDataSource
 
aliasName - Variable in class edu.unh.sdb.datasource.AliasDataSource
 
allocateBuffer(int, long) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
This method (re)allocates the specified I/O byte buffer to the byte size given by the second argument.
allocateBuffer(ByteBuffer, long) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
This method (re)allocates the argument I/O byte buffer to the byte size given by the second argument.
allocateBuffer(int, ISBounds) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
This method allocates a proper I/O bytebuffer for the queryBounds passed in as an argument.
allocateBuffer(int, ISBounds, int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
This method allocates a proper I/O bytebuffer for the queryBounds passed in as an argument.
allocateBuffer(int, ISBounds, ISBounds, int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
This method allocates a proper I/O bytebuffer for the specified grid space domain (gridBounds) and queryBounds passed in as arguments.
allocateBuffer(int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Allocate buffer 0.
allocateBuffer(ISBounds) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Allocate buffer 0.
allocateBuffer(ISBounds, int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Allocate buffer 0.
allocateBuffer(ISBounds, ISBounds, int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Allocate buffer 0.
AlwaysThrow - Static variable in class edu.unh.sdb.common.SDBError
 
anchor - Variable in class edu.unh.sdb.datasource.ISBoundsIterator
 
AppMonitor - Class in edu.unh.sdb.datasource
 
AppMonitor() - Constructor for class edu.unh.sdb.datasource.AppMonitor
 
approximate(Indexable, ISBounds) - Method in class edu.unh.sdb.datasource.DSApproximator
 
approximate(Cell, Point) - Method in class edu.unh.sdb.lattice.Approximator
 
approximate(Cell, Point, RecordSpec) - Method in class edu.unh.sdb.lattice.Approximator
 
approximate(Cell, Point) - Method in class edu.unh.sdb.lattice.AreaTriangleCellApproximator
 
approximate(Cell, Point, RecordSpec) - Method in class edu.unh.sdb.lattice.AreaTriangleCellApproximator
 
approximate(Cell, Point) - Method in class edu.unh.sdb.lattice.ArrayApproximator
Return an interpolated a Datum containing interpolated values of the attributes at the specified Point inside the cell.
approximate(Cell, Point, RecordSpec) - Method in class edu.unh.sdb.lattice.ArrayApproximator
Return an interpolated a Datum containing interpolated values of the a subset of attributes (specified by the RecordSpec) at the specified Point inside the cell.
approximate(Cell, Point, FieldIDMapper) - Method in class edu.unh.sdb.lattice.ArrayApproximator
Return an interpolated a Datum containing interpolated values of the a subset of attributes (specified by the FieldIDMapper) at the specified Point inside the cell.
approximate(Cell, Point) - Method in class edu.unh.sdb.lattice.LinearTriangleCellApproximator
 
approximate(Cell, Point, RecordSpec) - Method in class edu.unh.sdb.lattice.LinearTriangleCellApproximator
 
approximate(Cell, Point) - Method in class edu.unh.sdb.lattice.PlanarTriangleCellApproximator
 
approximate(Cell, Point, RecordSpec) - Method in class edu.unh.sdb.lattice.PlanarTriangleCellApproximator
 
Approximator - Class in edu.unh.sdb.lattice
The Approximator class implements an approximating function used by the lattice to compute data values for domain locations that do not necessarily correspond to a sample point.
Approximator() - Constructor for class edu.unh.sdb.lattice.Approximator
 
approximator - Variable in class edu.unh.sdb.lattice.Lattice
 
ARBlock - Class in edu.unh.sdb.datasource
 
ARBlock(ComponentInfo[]) - Constructor for class edu.unh.sdb.datasource.ARBlock
Construct a AR datablock with the given ComponentInfo array.
ARCellParser - Class in edu.unh.sdb.ARRSTreeBuilder
 
ARCellParser(InputStreamReader, ARRSBuilder) - Constructor for class edu.unh.sdb.ARRSTreeBuilder.ARCellParser
 
AREA_TRIANGLE_APPROXIMATOR - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote triangle approximator
AreaTriangleCellApproximator - Class in edu.unh.sdb.lattice
 
AreaTriangleCellApproximator() - Constructor for class edu.unh.sdb.lattice.AreaTriangleCellApproximator
 
ARRAY_APPROXIMATOR - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote array approximator
ArrayApproximator - Class in edu.unh.sdb.lattice
The ArrayApproximator class is meant for use with the ArrayCell class.
ArrayApproximator() - Constructor for class edu.unh.sdb.lattice.ArrayApproximator
 
ArrayCell - Class in edu.unh.sdb.lattice
This class defines cells used with regular geometries and rectilinear topologies.
ArrayCell(Point[], Datum[]) - Constructor for class edu.unh.sdb.lattice.ArrayCell
Construct a array cell with the corners defined by the "vertices" with attribute values at those corners defined by "data".
ArrayCell(Point[], Datum[], int) - Constructor for class edu.unh.sdb.lattice.ArrayCell
Deprecated.
The dimensionality argument is superfluous.
ARRep(ISBounds) - Method in class edu.unh.sdb.datasource.BlockedDataSource
Return a ARBlock, which is a AR representation of the requested area of specified ISBounds
ARRep(ISBounds) - Method in class edu.unh.sdb.datasource.BlockManager
Return a ARBlock, which is a AR representation of the requested area of specified ISBounds
ARRep(ISBounds) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Return a ARBlock, which is a AR representation of the requested area of specified ISBounds
ARRSBuilder - Class in edu.unh.sdb.ARRSTreeBuilder
 
ARRSBuilder(String, CellIndexable) - Constructor for class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
ARRSCell - Class in edu.unh.sdb.datasource
 
ARRSCell() - Constructor for class edu.unh.sdb.datasource.ARRSCell
construction without arguments
ARRSCell(CellID) - Constructor for class edu.unh.sdb.datasource.ARRSCell
Constructor with the specified cell id
ARRSCell(CellID, int) - Constructor for class edu.unh.sdb.datasource.ARRSCell
Constructor with the specified cell id and dimensionality
ARRSCell(CellID, ISBounds) - Constructor for class edu.unh.sdb.datasource.ARRSCell
Constructor with the specified cell id and base bounds
ARRSCellBlock - Class in edu.unh.sdb.datasource
 
ARRSCellBlock() - Constructor for class edu.unh.sdb.datasource.ARRSCellBlock
Construct a ARRSCellBlock without arguments
ARRSCellBlock(ARRSTree, DataSource) - Constructor for class edu.unh.sdb.datasource.ARRSCellBlock
Construct a ARRSCellBlock with an ARRSTree
ARRSCellBlock(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.ARRSCellBlock
Construct a ARRSCellBlock with the given base bounds and number of attributes
ARRSCellBlock(String, String, String) - Constructor for class edu.unh.sdb.datasource.ARRSCellBlock
Deprecated.
A Block should not be created from DS specs; create DS and subblock. This is also "copy" version specific.
ARRSCellBlockIterator - Class in edu.unh.sdb.datasource
 
ARRSCellBlockIterator(CellIndexable) - Constructor for class edu.unh.sdb.datasource.ARRSCellBlockIterator
construction with an uniform cell block
ARRSCellCopyDS - Class in edu.unh.sdb.datasource
 
ARRSCellCopyDS() - Constructor for class edu.unh.sdb.datasource.ARRSCellCopyDS
Construct a ARRSCellCopyDS without arguments
ARRSCellCopyDS(ARRSTree, DataSource) - Constructor for class edu.unh.sdb.datasource.ARRSCellCopyDS
Construct a ARRSCellCopyDS with an ARRSTree
ARRSCellCopyDS(String, String, String) - Constructor for class edu.unh.sdb.datasource.ARRSCellCopyDS
Construct a ARRSCellCopyDS with command file,indexFDL,and ARRSCellCopyDS
ARRSCellDataSource - Class in edu.unh.sdb.datasource
 
ARRSCellDataSource() - Constructor for class edu.unh.sdb.datasource.ARRSCellDataSource
Construct a ARRSCellDataSource without arguments
ARRSCellDataSource(ARRSTree, DataSource) - Constructor for class edu.unh.sdb.datasource.ARRSCellDataSource
Construct a ARRSCellDataSource with an ARRSTree
ARRSCellID - Class in edu.unh.sdb.datasource
 
ARRSCellID() - Constructor for class edu.unh.sdb.datasource.ARRSCellID
Consturctor without arguments
ARRSCellID(IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.ARRSCellID
Consturctor takes the specified IndexSpaceID in a cell space
ARRSCellID(IndexSpaceID, int[]) - Constructor for class edu.unh.sdb.datasource.ARRSCellID
Consturction takes the specified IndexSpaceID in a cell space and the specified path in a ARRS tree.
ARRSCellIterator - Class in edu.unh.sdb.datasource
 
ARRSCellIterator(CellIndexable) - Constructor for class edu.unh.sdb.datasource.ARRSCellIterator
Constructor takes an ARRS cell block
ARRSClippedCopyLeafNode - Class in edu.unh.sdb.datasource
 
ARRSClippedCopyLeafNode() - Constructor for class edu.unh.sdb.datasource.ARRSClippedCopyLeafNode
Constructor without argument
ARRSClippedCopyLeafNode(ISBounds) - Constructor for class edu.unh.sdb.datasource.ARRSClippedCopyLeafNode
Constructor takes a single ISbounds
ARRSClippedCopyLeafNode(ISBounds, CellIndexable) - Constructor for class edu.unh.sdb.datasource.ARRSClippedCopyLeafNode
Constructor takes a ISbounds and a cell block
ARRSClippedCopyLeafNode(ARRSCopyLeafNode) - Constructor for class edu.unh.sdb.datasource.ARRSClippedCopyLeafNode
Copy constructor
ARRSClippedCopyLeafNode(ARRSClippedCopyLeafNode) - Constructor for class edu.unh.sdb.datasource.ARRSClippedCopyLeafNode
Copy constructor with subbounds
ARRSCopyDataBlock - Class in edu.unh.sdb.datasource
ARRSCopyDataBlock.java Used to hold the definition of a DataBlock (for the points) in an ARRSCellBlock or an ARRSCellDS using the Copy model.
ARRSCopyDataBlock(ISBounds, RecordDescriptor, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ARRSCopyDataBlock
 
ARRSCopyDataBlock(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.ARRSCopyDataBlock
 
ARRSCopyLeafNode - Class in edu.unh.sdb.datasource
 
ARRSCopyLeafNode() - Constructor for class edu.unh.sdb.datasource.ARRSCopyLeafNode
Constructor without argument
ARRSCopyLeafNode(ISBounds) - Constructor for class edu.unh.sdb.datasource.ARRSCopyLeafNode
Constructor takes a single ISbounds
ARRSCopyLeafNode(ISBounds, CellIndexable) - Constructor for class edu.unh.sdb.datasource.ARRSCopyLeafNode
Constructor takes a ISbounds and a cell block
ARRSCopyLeafNode(ARRSCopyLeafNode) - Constructor for class edu.unh.sdb.datasource.ARRSCopyLeafNode
Copy constructor
ARRSCopyModelBuilder - Class in edu.unh.sdb.ARRSTreeBuilder
 
ARRSCopyModelBuilder(String, String, CellIndexable) - Constructor for class edu.unh.sdb.ARRSTreeBuilder.ARRSCopyModelBuilder
 
ARRSInternalNode - Class in edu.unh.sdb.datasource
 
ARRSInternalNode() - Constructor for class edu.unh.sdb.datasource.ARRSInternalNode
Constructor without argument
ARRSInternalNode(ISBounds) - Constructor for class edu.unh.sdb.datasource.ARRSInternalNode
Constructor takes a single ISBounds
ARRSInternalNode(ISBounds, CellIndexable) - Constructor for class edu.unh.sdb.datasource.ARRSInternalNode
Constructor takes a ISBounds and a CellIndexable
ARRSInternalNode(ARRSInternalNode) - Constructor for class edu.unh.sdb.datasource.ARRSInternalNode
Copy constructor
ARRSLeafNode - Class in edu.unh.sdb.datasource
 
ARRSLeafNode() - Constructor for class edu.unh.sdb.datasource.ARRSLeafNode
Constructor without argument
ARRSLeafNode(ISBounds) - Constructor for class edu.unh.sdb.datasource.ARRSLeafNode
Constructor takes a single ISbounds
ARRSLeafNode(ISBounds, CellIndexable) - Constructor for class edu.unh.sdb.datasource.ARRSLeafNode
Constructor takes a ISbounds and a cell block
ARRSNode - Class in edu.unh.sdb.datasource
 
ARRSNode() - Constructor for class edu.unh.sdb.datasource.ARRSNode
Constructor without argument
ARRSNode(ISBounds) - Constructor for class edu.unh.sdb.datasource.ARRSNode
Constructor takes a single ISBounds
ARRSNode(ISBounds, CellIndexable) - Constructor for class edu.unh.sdb.datasource.ARRSNode
Constructor takes a ISbounds and a ARR cell source
ARRSNode(ARRSNode) - Constructor for class edu.unh.sdb.datasource.ARRSNode
Copy constructor
arrSource - Variable in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
ARRSTree - Class in edu.unh.sdb.datasource
 
ARRSTree() - Constructor for class edu.unh.sdb.datasource.ARRSTree
Constructor without arguments
asDatum() - Method in class edu.unh.sdb.lattice.CellID
 
aSOURCE - Static variable in class edu.unh.sdb.mdb.Table
 
assign(float[]) - Method in class edu.unh.sdb.common.FloatDatum
Deprecated.
Use setFloats( float[] )
assign(float[], int, int) - Method in class edu.unh.sdb.common.FloatDatum
Deprecated.
Use setFloats( float[], int, int ), but note that the semantics of the start index is different in setFloats; the second argument is the array index to start the copy.
assign(int[]) - Method in class edu.unh.sdb.common.IntDatum
Copy the values in the argument to this datum.
assign(int[], int, int) - Method in class edu.unh.sdb.common.IntDatum
Deprecated.
Not really; just looking for usage because of changed semantics (01/05)
assign(byte[]) - Method in class edu.unh.sdb.common.MixedDatum
Copy the values in the argument to this datum.
assign(byte[], int) - Method in class edu.unh.sdb.common.MixedDatum
Assigns values to an existing datum by copying values from a portion of an array.
assign(byte[], int, int) - Method in class edu.unh.sdb.common.MixedDatum
Assigns values to an existing datum by copying values from a portion of an array.
assign(short[]) - Method in class edu.unh.sdb.common.ShortDatum
Deprecated.
Use setShorts( short[] )/
assign(short[], int, int) - Method in class edu.unh.sdb.common.ShortDatum
Deprecated.
Use setShorts( short[], int start, int numAttr ); Note that the semantics of the start argument of setShorts is different.
assign(PackedIndexSpaceID) - Method in class edu.unh.sdb.datasource.PackedIndexSpaceID
Set the axes of this id to the axes of the parameter id.
assign(Point) - Method in class edu.unh.sdb.lattice.Point
Set the axes of this id to the axes of the parameter id.
assign(float[], int, int) - Method in class edu.unh.sdb.lattice.Point
Deprecated.
Use setCoords( float[], int startIndex, int numCoords ). Note that the semantics of the start position is different in setCoords.
assign(int[], float[], float[], int, int, int) - Method in class edu.unh.sdb.lattice.TriangleCell
 
assign(Indexable, Indexable, RecordSpec, RecordSpec, RecordSpec, int, int, IndexSpaceID) - Method in class edu.unh.sdb.lattice.UnstructuredCell
 
attributeByteSizes() - Method in class edu.unh.sdb.common.RecordDescriptor
Returns an array of integers indicating the size in bytes of the correspoding attributes in this RecordDescriptor.
AttributeDescriptor - Class in edu.unh.sdb.common
Represents information about a single attribute of a point.
AttributeDescriptor(int, String) - Constructor for class edu.unh.sdb.common.AttributeDescriptor
Create an AttributeDescriptor from the given type and name.
AttributeDescriptor(int) - Constructor for class edu.unh.sdb.common.AttributeDescriptor
Create an unnamed AttributeDescriptor from the given type.
AttributeDescriptor(String) - Constructor for class edu.unh.sdb.common.AttributeDescriptor
Create an unnamed AttributeDescriptor from the given type string.
AttributeDescriptor(TypeTable, String, String) - Constructor for class edu.unh.sdb.common.AttributeDescriptor
Create an AttributeDescriptor from the given typestring and name and give TypeTable.
AttributeDescriptor(String, String) - Constructor for class edu.unh.sdb.common.AttributeDescriptor
Create an AttributeDescriptor from the given typestring and name.
AttributeJoinDataSource - Class in edu.unh.sdb.datasource
This class creates a new DataSource by joining attributes of some DataSources.
AttributeJoinDataSource(String, ComponentInfo[]) - Constructor for class edu.unh.sdb.datasource.AttributeJoinDataSource
Construct a new AJDS from the given name and an array of ComponentInfos.
AttributeJoinDataSource(String, DataSource[], FieldIDMapper[], ISBounds[], ISBounds) - Constructor for class edu.unh.sdb.datasource.AttributeJoinDataSource
Construct a new AJDS from the given name, information of the components and the ISBounds of this new AJDS.
AttributeJoinDataSource(String, DataSource[]) - Constructor for class edu.unh.sdb.datasource.AttributeJoinDataSource
This constructor joins all the attributes of the given congruent DataSources.
AttributeJoinDataSource(String, DataSource[], ISBounds[]) - Constructor for class edu.unh.sdb.datasource.AttributeJoinDataSource
Construct a new AJDS by joining all the attributes of the subsets specified by the given ISBounds array and the corresponding DataSource array.
AttributeJoinDataSource(String, DataSource[], ISBounds) - Constructor for class edu.unh.sdb.datasource.AttributeJoinDataSource
This constructor joins all the attributes of the given congruent distinct DataSources.
AttributeJoinDataSource(String, DataSource[], ISBounds[], ISBounds) - Constructor for class edu.unh.sdb.datasource.AttributeJoinDataSource
Construct a new AJDS by joining all the attributes of the subsets specified by the given ISBounds array and the corresponding DataSource array.
attributeOrder - Static variable in class edu.unh.sdb.datasource.DataCollection
 
AttributeOrderBFDS - Class in edu.unh.sdb.datasource
This class will read from a file of binary data, providing an n-dimensional datasource view of that file.
AttributeOrderBFDS(String, RecordDescriptor, ISBounds, AxisOrdering, String, ByteOrder) - Constructor for class edu.unh.sdb.datasource.AttributeOrderBFDS
create a AttributeOrderBFDS , set the initial file offset at 0
AttributeOrderBFDS(String, RecordDescriptor, ISBounds, AxisOrdering, String, ByteOrder, int) - Constructor for class edu.unh.sdb.datasource.AttributeOrderBFDS
create a AttributeOrderBFDS , set the initi file offset at the given value
ATTRIBUTEPROJECTION - Static variable in class edu.unh.sdb.mdb.Table
define table name
axes - Variable in class edu.unh.sdb.datasource.IntegerIndexSpaceID
 
axes - Variable in class edu.unh.sdb.lattice.Point
 
AxisOrdering - Class in edu.unh.sdb.datasource
The AxisOrdering class is used to specify the axisOrdering of axes.
AxisOrdering(int) - Constructor for class edu.unh.sdb.datasource.AxisOrdering
Creates an AxisOrdering of the specified size and populates it with the default axisOrdering: 0..size-1
AxisOrdering(int[]) - Constructor for class edu.unh.sdb.datasource.AxisOrdering
Creates an AxisOrdering from the array of integers.
axisOrdering - Variable in class edu.unh.sdb.datasource.DataCollection
AxisOrdering describes how axis indexes map to the physical data storage
axisOrdering - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Declares the axis axisOrdering
axisOrdering - Variable in class edu.unh.sdb.datasource.XDDLReader
 
AXISORDERING - Static variable in class edu.unh.sdb.mdb.Table
define table name
axisWeights - Variable in class edu.unh.sdb.common.DataArray
 
axisWeights - Variable in class edu.unh.sdb.datasource.DataCollection
axisWeights define stride values to find the neighbor in index space in a given axis.
axisWeights - Variable in class edu.unh.sdb.datasource.DataSink
 
axisWeights - Variable in class edu.unh.sdb.datasource.RegularISPartitioning
 
axisWeights - Variable in class edu.unh.sdb.lattice.CellGroupGrid
 

B

backedByFile - Variable in class edu.unh.sdb.lattice.FileCellGroup
 
base_resolution - Variable in class edu.unh.sdb.datasource.VRIndexable
 
baseBounds - Variable in class edu.unh.sdb.datasource.ARRSNode
 
baseBounds - Variable in class edu.unh.sdb.datasource.RectilinearCell
 
baseFileName - Variable in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
 
basePointInfoFileName(String) - Static method in class edu.unh.sdb.lattice.UnstructuredTopology
 
baseVIndicesFileName(String) - Static method in class edu.unh.sdb.lattice.UnstructuredTopology
 
BasicBlock - Class in edu.unh.sdb.datasource
 
BasicBlock(ISBounds, RecordDescriptor, Values) - Constructor for class edu.unh.sdb.datasource.BasicBlock
Construct a BasicBlock with the given data and ISBounds.
BasicBlock(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.BasicBlock
Construct a datablock with the given bounds and number of attributes.
BasicBlock(ISBounds, RecordDescriptor, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.BasicBlock
Construct a datablock with the given bounds and axisordering.
bAXIS - Static variable in class edu.unh.sdb.mdb.Table
 
bBOUNDSID - Static variable in class edu.unh.sdb.mdb.Table
 
BDISBoundsIterator - Class in edu.unh.sdb.datasource
The BDISBoundsIterator class traverses the specified IndexSpace with the specified shape and the specified steps.
BDISBoundsIterator(ISBounds, int[], int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct an BDISBoundsIterator that will traverse the given space with an an ISBounds of the given shape (dimensions).
BDISBoundsIterator(ISBounds, int[], int[]) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct a bounds iterator with default AxisOrdering.
BDISBoundsIterator(ISBounds, int[]) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct a bounds iterator with no gaps and default AxisOrdering.
BDISBoundsIterator(ISBounds, ISBounds) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct a bounds iterator with no gaps and default AxisOrdering.
BDISBoundsIterator(ISBounds, int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct a bounds iterator with no gaps.
BDISBoundsIterator(ISBounds, ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct a bounds iterator with no gaps.
BDISBoundsIterator(ISBounds, IntegerIndexSpaceID, int[], int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct an BDISBoundsIterator that will traverse the given space with an an ISBounds of the given shape (dimensions).
BDISBoundsIterator(ISBounds, IntegerIndexSpaceID, int[]) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct a bounds iterator with specified anchor position, no gaps and default axis axisOrdering.
BDISBoundsIterator(ISBounds, IntegerIndexSpaceID, int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct a bounds iterator with specified anchor position and no gaps.
BDISBoundsIterator(ISBounds, IntegerIndexSpaceID, int[], int[]) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
Construct a bounds iterator with specified anchor position and default axis axisOrdering.
BDISBoundsIterator(int) - Constructor for class edu.unh.sdb.datasource.BDISBoundsIterator
 
BDsetupAndCheck(int[], int[]) - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
 
BIG_ENDIAN - Static variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
BinaryFileDataSource - Class in edu.unh.sdb.datasource
This class will read from a file of binary data, providing an n-dimensional datasource view of that file.
BinaryFileDataSource(String, FDLDescriptor) - Constructor for class edu.unh.sdb.datasource.BinaryFileDataSource
Create a BinaryFileDataSource from an fdl
BinaryFileDataSource(String, RecordDescriptor, ISBounds, AxisOrdering, String, ByteOrder) - Constructor for class edu.unh.sdb.datasource.BinaryFileDataSource
create a BinaryFileDataSource, set the initial file offset at 0
BinaryFileDataSource(String, RecordDescriptor, ISBounds, AxisOrdering, String, ByteOrder, int) - Constructor for class edu.unh.sdb.datasource.BinaryFileDataSource
crate a BinaryFileDataSource, set the initial file offset at the given value
block - Variable in class edu.unh.sdb.datasource.DSArrayStencil
 
block_plane_offset - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
blockAccess(int, ISBounds) - Method in interface edu.unh.sdb.datasource.DynamicChunking.BlockAccessCallback
 
blockArray - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
blockBounds - Variable in class edu.unh.sdb.datasource.BlockManager
 
blockBounds - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
BlockCache - Class in edu.unh.sdb.datasource
The BlockCache class is the parent class for all caches that store blocks of data in memory.
BlockCacheDataSource - Class in edu.unh.sdb.datasource
 
BlockCacheDataSource(String, DataSource, ISBounds, IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.BlockCacheDataSource
Create a BlockCacheDataSource backed by the DataSource given as the second argument.
blockDimensions - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Denotes the block (partition) dimensions for SparseDataSource
blockDimensionsArray - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
BlockedDataSource - Class in edu.unh.sdb.datasource
BlockedDataSource does a spatial join on several blocks of DataSources into one DataSource
BlockedDataSource(String, ComponentInfo[]) - Constructor for class edu.unh.sdb.datasource.BlockedDataSource
Construct a BlockedDataSource from an array of ComponentInfo.
BlockedDataSource(String, DataSource[]) - Constructor for class edu.unh.sdb.datasource.BlockedDataSource
This constructor joins all the blocks of the input DataSources.
BlockedDataSource(String, DataSource[], ISBounds[]) - Constructor for class edu.unh.sdb.datasource.BlockedDataSource
Construct a new BlockedDS by specified by the given ISBounds array and the corresponding DataSource array.
BlockedDataSource(String, DataSource[], ISBounds) - Constructor for class edu.unh.sdb.datasource.BlockedDataSource
This constructor joins all the blocks of the input arrays.
BlockedDataSource(String, DataSource[], ISIDMapper[]) - Constructor for class edu.unh.sdb.datasource.BlockedDataSource
Construct a BlockedDataSource from parallel arrays of DataSource, and ISIDMapper
BlockedDataSource(String, DataSource[], FieldIDMapper[], ISIDMapper[]) - Constructor for class edu.unh.sdb.datasource.BlockedDataSource
Construct a BlockedDataSource from parallel arrays of DataSource, FieldIDMapper and ISIDMapper
BlockedDataSourceBuilder - Class in edu.unh.sdb.datasource
Manufactures Logical Blocked DataSource objects.
BlockedDataSourceBuilder(DataSourceCollection, String) - Constructor for class edu.unh.sdb.datasource.BlockedDataSourceBuilder
Default Constructor sets the bounds and recordDesc members to default values.
blockISID - Variable in class edu.unh.sdb.datasource.RegularPartitionISID
 
blockList - Variable in class edu.unh.sdb.datasource.DataBlockCollection
 
BlockListCache - Class in edu.unh.sdb.datasource
 
BlockListCache(PhysicalDataSource, int, ISBounds) - Constructor for class edu.unh.sdb.datasource.BlockListCache
 
BlockListCacheDataSource - Class in edu.unh.sdb.datasource
 
BlockListCacheDataSource(String, DataSource, ISBounds, ISBounds, int) - Constructor for class edu.unh.sdb.datasource.BlockListCacheDataSource
 
blockLoc - Variable in class edu.unh.sdb.datasource.RegularPartitionISID
 
blockLocation - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
BlockManager - Class in edu.unh.sdb.datasource
 
BlockManager(ComponentInfo[]) - Constructor for class edu.unh.sdb.datasource.BlockManager
Construct a BlockManager from an array of ComponentInfo.
blockMapper - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
blockNum - Variable in class edu.unh.sdb.datasource.RegularPartitionISID
 
blockNumber - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache.SliceCacheIOThread
 
blockPartitioning - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
blockShape - Variable in class edu.unh.sdb.datasource.RegularPartitionISID
 
blockSizes - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
blockSliceDimension - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
bLOWERBOUNDS - Static variable in class edu.unh.sdb.mdb.Table
 
Boolean - Static variable in class edu.unh.sdb.common.StorageType
 
Borrowed2DTriangleCell - Class in edu.unh.sdb.lattice
 
Borrowed2DTriangleCell(DataSource, DataSource, RecordSpec, RecordSpec, RecordSpec, RecordSpec, IndexSpaceID) - Constructor for class edu.unh.sdb.lattice.Borrowed2DTriangleCell
 
borrowedCellGrid - Variable in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
 
borrowedCellGridFDLD - Variable in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
 
borrowedCellRD - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
borrowedCells - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
borrowedTempVIndicesName - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
borrowedTempVIndicesSink - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
borrowedVIndices - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
borrowedVIndicesFDLD - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
boundingBox() - Method in class edu.unh.sdb.lattice.TriangleCell
 
boundingBox(int[], float[], int, int) - Static method in class edu.unh.sdb.lattice.TriangleCell
 
boundingVolume(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use setToBoundingVolume( ISBounds )
boundingVolume(GBounds) - Method in class edu.unh.sdb.lattice.GBounds
Updates this GBounds object to be the bounding volume of this GBounds and the parameter GBounds.
Bounds - Class in edu.unh.sdb.common
The Bounds class is meant to represent n-d hypercubes in an n-d space.
Bounds() - Constructor for class edu.unh.sdb.common.Bounds
 
bounds - Variable in class edu.unh.sdb.datasource.BlockManager
 
bounds - Variable in class edu.unh.sdb.datasource.DataCollection
Denotes extent of Index Space
bounds - Variable in class edu.unh.sdb.datasource.DataSink
 
bounds - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Denotes extent of Index Space
bounds - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
bounds - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
bounds - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
bounds - Variable in class edu.unh.sdb.datasource.VRIndexable
 
bounds - Variable in class edu.unh.sdb.lattice.CellGroup
 
bounds - Variable in class edu.unh.sdb.lattice.Geometry
 
bounds - Variable in class edu.unh.sdb.lattice.RectilinearTopology
 
BOUNDS - Static variable in class edu.unh.sdb.mdb.Table
define table name
BoundsError - Class in edu.unh.sdb.common
This error is used whenever there is some kind of bounds violation.
BoundsError(int, String) - Constructor for class edu.unh.sdb.common.BoundsError
Create an error with the specified error level and message.
BoundsException - Exception in edu.unh.sdb.common
This exception is thrown whenever there is some kind of bounds violation.
buffer - Variable in class edu.unh.sdb.datasource.BufferedOneDDataSink
 
buffer_size - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
buffer_size - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
bufferBounds - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
bufferDimension - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
BufferedOneDDataSink - Class in edu.unh.sdb.datasource
 
BufferedOneDDataSink(String, RecordDescriptor, int) - Constructor for class edu.unh.sdb.datasource.BufferedOneDDataSink
Constructs a one dimensional Datasink without specifying a bounds for the index space.
bufferIterCopy - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
bufferSteps - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
bufferUpper - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
buildBounds(ISBounds) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Builds the bounds string to be sent to the RemoteUDPServer.
buildBounds(ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Builds the bounds string to be sent to the RemoteUDPServer.
buildBounds(ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Builds the bounds string to be sent to the RemoteUDPServer.
buildISBounds(ComponentInfo[]) - Static method in class edu.unh.sdb.datasource.BlockManager
 
buildLeafList() - Method in class edu.unh.sdb.datasource.ARRSTree
Traverse all the leaf cell block in a ARR tree
buildMapper(String[]) - Method in class edu.unh.sdb.datasource.SparseDataSource
generate the block mapping hash table
buildTreePath() - Method in class edu.unh.sdb.datasource.ARRSTree
Set the path of this tree
bUPPERBOUNDS - Static variable in class edu.unh.sdb.mdb.Table
 
Byte - Static variable in class edu.unh.sdb.common.StorageType
 
byteArrayLength - Variable in class edu.unh.sdb.datasource.BufferedOneDDataSink
 
byteBuffers - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
ByteDatum - Class in edu.unh.sdb.common
Represent multiple data values for a single point.
ByteDatum(int) - Constructor for class edu.unh.sdb.common.ByteDatum
Creates a null datum with the specified number of values.
ByteDatum(byte) - Constructor for class edu.unh.sdb.common.ByteDatum
Deprecated. 
ByteDatum(byte[]) - Constructor for class edu.unh.sdb.common.ByteDatum
Creates a datum with attributes containing the argument values.
ByteDatum(byte[], int, int) - Constructor for class edu.unh.sdb.common.ByteDatum
Deprecated.
Not really; just looking for usage because of changed semantics (01/05)
ByteDatum(int[]) - Constructor for class edu.unh.sdb.common.ByteDatum
Creates a datum with attributes containing the argument values.
ByteDatum(ByteDatum) - Constructor for class edu.unh.sdb.common.ByteDatum
Copy Constructor creates a copy of the argument datum.
ByteDatum(Datum) - Constructor for class edu.unh.sdb.common.ByteDatum
Copy Constructor creates a copy of the argument datum.
ByteDatum(ByteDatum[]) - Constructor for class edu.unh.sdb.common.ByteDatum
This constructor creates a single ByteDatum from an array of datums.
byteOffset(int) - Method in class edu.unh.sdb.common.RecordDescriptor
Return the offset of the indicated attribute from the beginning of the record.
byteOffsets - Variable in class edu.unh.sdb.common.RecordDescriptor
 
byteOffsets() - Method in class edu.unh.sdb.common.RecordDescriptor
Returns an array of integers indicated the byte offsets of each of the correspoding attributes in this RecordDescriptor.
bytes - Variable in class edu.unh.sdb.datasource.BufferedOneDDataSink
 
byteSize() - Method in class edu.unh.sdb.common.AttributeDescriptor
Return the number of bytes occupied by an instance of the attribute described by this AttributeDescriptor.
byteSize() - Method in class edu.unh.sdb.common.ByteDatum
Return the size in bytes needed to store the data for the attributes.
byteSize() - Method in class edu.unh.sdb.common.Datum
Return the size in bytes required to store the attributes in the datum.
byteSize() - Method in class edu.unh.sdb.common.DoubleDatum
Return the size in bytes needed to store the data for the attributes.
byteSize() - Method in class edu.unh.sdb.common.FloatDatum
Return the size in bytes needed to store the data for the attributes.
byteSize() - Method in class edu.unh.sdb.common.IntDatum
Return the size in bytes needed to store the data for the attributes.
byteSize() - Method in class edu.unh.sdb.common.IntValues
retrun the size in bytes of all the attributes in this datum.
byteSize() - Method in class edu.unh.sdb.common.MixedDatum
Return the size in bytes needed to store the data for the attributes.
byteSize - Variable in class edu.unh.sdb.common.RecordDescriptor
 
byteSize() - Method in class edu.unh.sdb.common.RecordDescriptor
Return the number of bytes occupied by records decribed by this descriptor.
byteSize() - Method in class edu.unh.sdb.common.ShortDatum
Return the size in bytes needed to store the data for the attributes.
byteSize(int) - Static method in class edu.unh.sdb.common.StorageType
Return the length in bytes of the "basic" StorageTypes.
byteSize() - Method in class edu.unh.sdb.datasource.DataCollection
Return the number of bytes used to represent a datum.
BytesOnlyRecordDescriptor - Class in edu.unh.sdb.common
 
BytesOnlyRecordDescriptor(RecordDescriptor) - Constructor for class edu.unh.sdb.common.BytesOnlyRecordDescriptor
 
bytesToFloats(float[], byte[], int) - Static method in class edu.unh.sdb.datasource.GraniteRemoteClient
private method, convert bytes into floats.
bytesToShorts(short[], byte[], int) - Static method in class edu.unh.sdb.datasource.GraniteRemoteClient
private method, convert bytes into shorts.
ByteValues - Class in edu.unh.sdb.common
ByteValues is Values that store bytes in a 1-D byte array
ByteValues() - Constructor for class edu.unh.sdb.common.ByteValues
construct a ByteValues with no data
ByteValues(byte[]) - Constructor for class edu.unh.sdb.common.ByteValues
construct a ByteValues for a given byte array
ByteValues(int) - Constructor for class edu.unh.sdb.common.ByteValues
construct a ByteValues, given the size of the byteArray
byteValues() - Method in class edu.unh.sdb.common.ByteValues
Deprecated.
Use getDataReference()
byteValues() - Method in class edu.unh.sdb.common.MixedValues
Deprecated.
Use getDataReference()

C

c - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache.SliceCacheIOThread
 
cacheBlockBounds - Variable in class edu.unh.sdb.datasource.BlockCache
 
cacheBlockDimensions - Variable in class edu.unh.sdb.datasource.BlockCache
 
CacheDataBlock - Class in edu.unh.sdb.datasource
A CacheDataBlock is a CompositeBlock that is used internally by the CacheDataSource.
CacheDataSource - Class in edu.unh.sdb.datasource
This is the abstract base class for all datasources that provide caching service for an underlying datasource.
CacheDataSource(String, DataSource, ISBounds) - Constructor for class edu.unh.sdb.datasource.CacheDataSource
Create a CacheDataSource with a Cache associated with the argument datasource.
CacheMaker - Class in edu.unh.sdb.datasource
 
CacheMaker() - Constructor for class edu.unh.sdb.datasource.CacheMaker
 
cachePartitioning - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
cacheRefTime - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
calculateIntersectionPoints(Plane) - Method in class edu.unh.sdb.datasource.Volume
 
calculateNumElems(int, ISBounds) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
calculateRotation(Vector3d, Vector3d, Vector3d, Vector3d) - Static method in class edu.unh.sdb.datasource.SliceUtil
Calculate the rotation to get from 'srcZero' and 'srcOne' to 'destZero' and 'destOne' .
calculateRotation(Vector3d, Vector3d, Matrix4d) - Static method in class edu.unh.sdb.datasource.SliceUtil
 
calculateRotation(Vector3d, Vector3d, AxisAngle4d) - Static method in class edu.unh.sdb.datasource.SliceUtil
Calculate the rotation to get from 'src' to 'dest' and store that in 'axisAngle'
calculateRotationHeadingPitchBank() - Method in class edu.unh.sdb.common.EulerAngles
 
calculateSliceTranslation() - Method in class edu.unh.sdb.datasource.Slice
Calculates the translation for the 2D projection of intersection polygon such that the 2D polygon is stationary as the polygon move through the volume.
cATTRIBUTEPROJECTIONID - Static variable in class edu.unh.sdb.mdb.Table
 
cCOMPONENTBOUNDSID - Static variable in class edu.unh.sdb.mdb.Table
 
cCOMPONENTDSID - Static variable in class edu.unh.sdb.mdb.Table
 
cCOMPOSITEBOUNDSID - Static variable in class edu.unh.sdb.mdb.Table
 
cCOMPOSITEDSID - Static variable in class edu.unh.sdb.mdb.Table
 
Cell - Class in edu.unh.sdb.datasource
 
Cell() - Constructor for class edu.unh.sdb.datasource.Cell
Constructor without argument
Cell(CellID) - Constructor for class edu.unh.sdb.datasource.Cell
Constructor takes a single CellID
Cell(CellID, int) - Constructor for class edu.unh.sdb.datasource.Cell
Constructor takes a CellID and the dimensionality
cell - Variable in class edu.unh.sdb.datasource.CellIterator
 
Cell - Class in edu.unh.sdb.lattice
The Cell class groups several sample points into a cell.
Cell(Point[], Datum[]) - Constructor for class edu.unh.sdb.lattice.Cell
 
Cell(int, int, int) - Constructor for class edu.unh.sdb.lattice.Cell
 
CellBlock - Class in edu.unh.sdb.datasource
 
CellBlock() - Constructor for class edu.unh.sdb.datasource.CellBlock
Construct a CellBlock without arguments
CellBlock(ISBounds, AxisOrdering, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.CellBlock
Construct a CellBlock with the given bounds, axis axisOrdering and RecordDescriptor.
CellBlock(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.CellBlock
Construct a CellBlock with the given bounds and number of attributes
CellBlock(DataBlock) - Constructor for class edu.unh.sdb.datasource.CellBlock
Construct a CellBlock with a given point DataBlock
CellBlockIterator - Class in edu.unh.sdb.datasource
 
CellBlockIterator() - Constructor for class edu.unh.sdb.datasource.CellBlockIterator
construction with an uniform cell block
CellBoundsIterator - Class in edu.unh.sdb.datasource
CellBoundsIterator creates ISBounds with length 2 in all dimensions, and an overlap of -1.
CellBoundsIterator(ISBounds) - Constructor for class edu.unh.sdb.datasource.CellBoundsIterator
 
CellBoundsIterator(ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.CellBoundsIterator
 
CellDataCollection - Class in edu.unh.sdb.datasource
 
CellDataCollection() - Constructor for class edu.unh.sdb.datasource.CellDataCollection
 
CellDataSource - Class in edu.unh.sdb.datasource
 
CellDataSource() - Constructor for class edu.unh.sdb.datasource.CellDataSource
Constructor without arguments
CellDataSource(RecordDescriptor, ISBounds) - Constructor for class edu.unh.sdb.datasource.CellDataSource
Constructor with RecordDescriptor and ISBounds
CellDataSource(DataSource) - Constructor for class edu.unh.sdb.datasource.CellDataSource
Constructor sets all data members to copies of the corresponding members from the argument DataSource.
CellGroup - Class in edu.unh.sdb.lattice
 
CellGroup(GBounds) - Constructor for class edu.unh.sdb.lattice.CellGroup
 
CellGroupGrid - Class in edu.unh.sdb.lattice
 
CellGroupGrid() - Constructor for class edu.unh.sdb.lattice.CellGroupGrid
 
CellGroupGrid(Partitioning, AxisOrdering) - Constructor for class edu.unh.sdb.lattice.CellGroupGrid
 
cellID - Variable in class edu.unh.sdb.datasource.Cell
 
CellID - Class in edu.unh.sdb.datasource
 
CellID() - Constructor for class edu.unh.sdb.datasource.CellID
Constructor without argument
CellID(IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.CellID
Constructor takes a single IndexSpaceID that represents the position of a cell in a cell space.
CellID - Class in edu.unh.sdb.lattice
 
CellID(IndexSpaceID, int) - Constructor for class edu.unh.sdb.lattice.CellID
 
CellID(Datum, int) - Constructor for class edu.unh.sdb.lattice.CellID
 
CellIndexable - Interface in edu.unh.sdb.datasource
An interface for classes that can be thought of as a cell space.
cellIndices - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
CellIterator - Class in edu.unh.sdb.datasource
 
CellIterator() - Constructor for class edu.unh.sdb.datasource.CellIterator
Constructor without argument
cellList - Variable in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroup
 
cellSource - Variable in class edu.unh.sdb.datasource.ARRSNode
 
changeResolution(int) - Method in class edu.unh.sdb.datasource.MRDataSource
boolean changeResolution( int changeCode ) changeCode = 0 implies go to resolution level zero otherwise new resolution level = old level + changeCode changeCode < 0 implies make resolution finer by abs( changeCode ) levels changeCode > 0 implies make resolution coarser by changeCode levels
Char - Static variable in class edu.unh.sdb.common.StorageType
 
check(ComponentInfo[]) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Check the array of ComponentInfo for AJDS.
check(ComponentInfo[]) - Method in class edu.unh.sdb.datasource.BlockedDataSource
Check the validity of the given ComponentInfo array
check(ComponentInfo[]) - Method in class edu.unh.sdb.datasource.BlockManager
 
check(ComponentInfo[]) - Method in class edu.unh.sdb.datasource.CompositeDataSource
Check the array of componentInfo
check(ComponentInfo[]) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Check the validity of the given ComponentInfo array
checkActivated() - Method in class edu.unh.sdb.datasource.DataSource
Check if the DataSource has been activated before trying to access data.
checkCoarser(int) - Method in class edu.unh.sdb.datasource.MRDataSource
void checkCoarser( int level ) Try to open next coarser data representation.
checkComponentID() - Method in class edu.unh.sdb.common.FieldIDMapper
Check whether the numbers in this.componentFields are distinct.
checkCompositeID() - Method in class edu.unh.sdb.common.FieldIDMapper
Check whether the numbers in this.compositeFields are distinct.
checkSize(ISBounds) - Method in class edu.unh.sdb.datasource.BlockListCache
 
checkTopology() - Method in class edu.unh.sdb.lattice.LatticeBuilder
check Topology's Geometry, if it is omitted, set it to the lattice's Geometry
ChomboDataSource - Class in edu.unh.sdb.datasource
 
ChomboDataSource(String) - Constructor for class edu.unh.sdb.datasource.ChomboDataSource
 
ChomboDataSource(String, String) - Constructor for class edu.unh.sdb.datasource.ChomboDataSource
 
ChomboDataSource(String, FDLDescriptor) - Constructor for class edu.unh.sdb.datasource.ChomboDataSource
 
chomboDesiredAttribute - Variable in class edu.unh.sdb.datasource.FDLDescriptor
 
ChomboErrors - Class in edu.unh.sdb.datasource
ChomboErrors: This is a class containing constant integer values referencing the various errors that may occur in the ChomboReader.
ChomboErrors() - Constructor for class edu.unh.sdb.datasource.ChomboErrors
 
ChomboRemoteClient - Class in edu.unh.sdb.datasource
 
ChomboRemoteClient(String, RecordDescriptor, ISBounds, String, String) - Constructor for class edu.unh.sdb.datasource.ChomboRemoteClient
 
ChomboRemoteClient(String, RecordDescriptor, ISBounds, AxisOrdering, String, String) - Constructor for class edu.unh.sdb.datasource.ChomboRemoteClient
 
chooseBytesPerValue() - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
determine how many bytes to use per offset when representing the stencil as an array of bytes.
chooseProjectionAxis(float[]) - Static method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return the axis along which the iterator will project the plane.
chunkDimensions - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Denotes the chunk (partition) dimensions for ChunkedDataSource
ChunkedDataSource - Class in edu.unh.sdb.datasource
This class performs chunking I/O operations.
ChunkedDataSource(String, FDLDescriptor) - Constructor for class edu.unh.sdb.datasource.ChunkedDataSource
Create a ChunkedDataSource from an fdl; In this case, the partitioning specifications are determined by the size of each partition, not the size of the partitioning space.
ChunkedDataSource(String, ISBounds, ISBounds, String, AxisOrdering, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.ChunkedDataSource
Creates a ChunkedDataSource object from 'fileName', how many chunks are on each direction are specified by 'partitioningBounds', the dimensions and placement of the volume given by 'spaceBounds', axis ordering 'order' and records described by 'recordDesc'.
chunkingPartitioning - Variable in class edu.unh.sdb.datasource.ChunkedDataSource
 
classifyVoxel(DataBlock, IndexSpaceID, DataBlock, IndexSpaceID, TransferFunction.Feature) - Method in class edu.unh.sdb.datasource.TransferFunction
 
classifyVoxels(DataBlock, ISBounds, DataBlock, TransferFunction.Feature) - Method in class edu.unh.sdb.datasource.TransferFunction
 
clear() - Method in class edu.unh.sdb.common.Metadata
Clears this Metadata object of all properties.
clear() - Method in class edu.unh.sdb.datasource.DataBlockCollection
 
clear() - Method in class edu.unh.sdb.datasource.DSArrayStencil
Clear this stencil of all elements.
clear() - Method in class edu.unh.sdb.datasource.DSBlockStencil
Clear this stencil of all elements.
clear() - Method in class edu.unh.sdb.datasource.DSListStencil
Clear this stencil of all elements.
clear() - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Clear this stencil of all elements.
clearCache() - Method in class edu.unh.sdb.datasource.DataSource
Attempts to clear the filesystem cache executing a shell script at $HOME/bin/trc.
clearCache() - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Clear the filesystem cache on the server.
clearCache() - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Clear the filesystem cache on the server.
clearLeafList() - Method in class edu.unh.sdb.datasource.ARRSTree
Clear the list of leaf cell blocks
clientAlarmSocket - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
clientAlarmSocket - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
clientAlarmSocket - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
clientControlPort - Static variable in class edu.unh.sdb.common.Globals
 
clientControlPort - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
clientControlPort - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
clientDataPort - Static variable in class edu.unh.sdb.common.Globals
 
clientDataPort - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
clientDataPort - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
clientSocket - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
clientSocket - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
ClientToServerControlInfo(String) - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
TCP Control Traffic to Server about missing packets.
ClientToServerControlInfo(String) - Static method in class edu.unh.sdb.datasource.RemoteUDTClient
TCP Control Traffic to Server about missing packets.
ClientToServerStencilPartitionList(byte[], int) - Static method in class edu.unh.sdb.datasource.GraniteRemoteClient
TCP Control Traffic to Server about Stencil's partition list.
ClientToServerStencilPartitionList(byte[], int) - Static method in class edu.unh.sdb.datasource.RemoteUDTClient
TCP Control Traffic to Server about Stencil's partition list.
clone() - Method in class edu.unh.sdb.common.AttributeDescriptor
Return a copy of the AttributeDescriptor as an Object.
clone() - Method in class edu.unh.sdb.common.Bounds
Return a copy of this Bounds object
clone() - Method in class edu.unh.sdb.common.ByteDatum
Return a copy of this datum.
clone() - Method in class edu.unh.sdb.common.Datum
Return a copy of this datum.
clone() - Method in class edu.unh.sdb.common.DoubleDatum
Return a copy of this datum.
clone() - Method in class edu.unh.sdb.common.FieldIDMapper
Return a copy of this FieldIDMapper object
clone() - Method in class edu.unh.sdb.common.FloatDatum
Return a copy of this datum.
clone() - Method in class edu.unh.sdb.common.IntDatum
Return a copy of this datum.
clone() - Method in class edu.unh.sdb.common.Metadata
 
clone() - Method in class edu.unh.sdb.common.MetadataCollection
 
clone() - Method in class edu.unh.sdb.common.MixedDatum
Return a copy of this datum.
clone() - Method in class edu.unh.sdb.common.RecordDescriptor
Make a copy of this RecordDescriptor.
clone() - Method in class edu.unh.sdb.common.ShortDatum
Return a copy of this datum.
clone() - Method in class edu.unh.sdb.common.SpaceID
 
clone() - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns a copy of this AxisOrdering.
clone() - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Return a copy of this BDISBoundsIterator
clone() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Create a clone of this object
clone() - Method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
Return a copy of this IndexSpaceID.
clone() - Method in class edu.unh.sdb.datasource.ISBounds
Return a copy of this ISBounds object
clone() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return a copy of this ISBoundsIterator
clone() - Method in class edu.unh.sdb.datasource.ISIterator
Return a copy of this ISIterator
clone() - Method in class edu.unh.sdb.datasource.PackedIndexSpaceID
Return a copy of this IndexSpaceID.
clone() - Method in class edu.unh.sdb.datasource.RegularPartitionISID
Return a copy of this RegularPartitionISID.
clone() - Method in class edu.unh.sdb.lattice.GBounds
Return a copy of this GBounds object
clone() - Method in class edu.unh.sdb.lattice.GBoundsGapIterator
Return a copy of this GBoundsGapIterator
clone() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Return a copy of this GBoundsIterator
clone() - Method in class edu.unh.sdb.lattice.GIterator
Return a copy of this GIterator
clone() - Method in class edu.unh.sdb.lattice.Point
Return a copy of this point.
close() - Method in class edu.unh.sdb.datasource.DataSink
 
closeWelcomeSocket() - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Close welcomeSocket for Control Information.
CNSock - Static variable in class edu.unh.sdb.common.Globals
 
coarser() - Method in class edu.unh.sdb.datasource.MRDataSource
boolean coarser( ) Move to next coarser data representation.
combine(FieldIDMapper, FieldIDMapper) - Method in class edu.unh.sdb.common.FieldIDMapper
Put two FieldIDMappers together.
component - Variable in class edu.unh.sdb.datasource.ComponentInfo
 
COMPONENT - Static variable in class edu.unh.sdb.mdb.Table
define table name
componentBounds - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
the bounds for each component
componentFieldPositions - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
the component field positions for mapping from component to composite
componentFields - Variable in class edu.unh.sdb.common.FieldIDMapper
The field numbers from a component DataSource.
componentIndices - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
the designated component Datasource indices into DataSourceList
ComponentInfo - Class in edu.unh.sdb.datasource
This class records information about a component DataSource of a AttributeJoinDataSource or BlockedDataSource.
ComponentInfo(Indexable, FieldIDMapper, ISIDMapper) - Constructor for class edu.unh.sdb.datasource.ComponentInfo
Construct a ComponentInfo from DataCollection, FieldIDMapper and ISIDMapper.
componentInfos - Variable in class edu.unh.sdb.datasource.CompositeDataSource
Information for every component.
componentMaps - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
 
components - Variable in class edu.unh.sdb.datasource.BlockManager
 
CompositeBlock - Class in edu.unh.sdb.datasource
 
CompositeBlock(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.CompositeBlock
Construct a datablock with the given bounds and RecordDescriptor.
CompositeBlock(ISBounds, RecordDescriptor, boolean) - Constructor for class edu.unh.sdb.datasource.CompositeBlock
Construct a datablock with the given bounds and RecordDescriptor.
CompositeBlock(ISBounds, RecordDescriptor, RecordSpec) - Constructor for class edu.unh.sdb.datasource.CompositeBlock
Construct a datablock with the given bounds and RecordDescriptor.
CompositeBlock(ISBounds, RecordDescriptor, FieldIDMapper) - Constructor for class edu.unh.sdb.datasource.CompositeBlock
Construct a datablock with the given bounds and RecordDescriptor.
compositeBounds - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
denotes extent of Index Space for the pending datasource
CompositeDataSource - Class in edu.unh.sdb.datasource
This class is a parent class for AttributeJoinDataSoure and BlockedDataSource.
CompositeDataSource(String, ComponentInfo[]) - Constructor for class edu.unh.sdb.datasource.CompositeDataSource
Create a CompositeDataSource defined by the ComponentInfo array.
compositeFieldNames - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
rdb added a single composite name vector; could have holes in it
compositeFieldPositions - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
the composite field positions for mapping from component to composite
compositeFields - Variable in class edu.unh.sdb.common.FieldIDMapper
The one-to-one corresponding field numbers from the composite DataSource.
computeBestBlockShape(AxisOrdering, int[], int, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
computeCacheArrayDimensions(float[], int[], int[], int[], int, int, boolean) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
computeCacheBlockDimensions(int, int[], float[], int[], int) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
computeCoords(long, int[], int[]) - Method in class edu.unh.sdb.datasource.AxisOrdering
Deprecated.
in favor of the version with long axisWeights
computeCoords(long, int[], long[]) - Method in class edu.unh.sdb.datasource.AxisOrdering
Compute the coordinates corresponding to the offset using the given axisWeights.
computeDimensions(int[], int[], float[], float[], int[], int[], int, int, int, long, boolean) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
computeMaxScaleFactor(int, int[]) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
computeOffset(IndexSpaceID, long[]) - Static method in class edu.unh.sdb.datasource.AxisOrdering
Map the IndexSpaceID to a single integer that serves as as an offset into the physical file or network source.
computeOffset(int[], long[]) - Static method in class edu.unh.sdb.datasource.AxisOrdering
Map the coordinates array to a single integer that serves as as an offset into the physical file or network source.
computeOffset(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataCollection
Maps an n-dimensional IndexSpaceID to a 1d offset.
computeOffset(int[]) - Method in class edu.unh.sdb.datasource.DataCollection
Maps an n-dimensional array of coordinates to a 1d offset
computeOffset(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataSink
Map the IndexSpaceID to a single integer that serves as as an Datum offset into the physical file or network source.
computeOffset(int[]) - Method in class edu.unh.sdb.datasource.DataSink
Maps an n-dimensional array of coordinates to an Datum offset in file or array.
computeOffset2(IndexSpaceID) - Method in class edu.unh.sdb.lattice.CellGroupGrid
Map the IndexSpaceID to a single integer that serves as as an offset into the physical file or network source.
computeRequiredMemory(int[], int[], int) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
configPath - Variable in class edu.unh.sdb.common.Configuration
 
Configuration - Class in edu.unh.sdb.common
 
Configuration() - Constructor for class edu.unh.sdb.common.Configuration
 
connectionSocket - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
connectionSocket - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
connectionSocket - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
containedBy(ISBounds) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Returns true if this IndexSpaceID is contained by the ISBounds parameter, or false otherwise.
containedBy(ISBounds) - Method in class edu.unh.sdb.datasource.ISIterator
Returns true if this IndexSpaceID is contained by the ISBounds parameter, or false otherwise.
containedBy(GBounds) - Method in class edu.unh.sdb.lattice.GIterator
Returns true if this Point is contained by the GBounds parameter, or false otherwise.
containedBy(GBounds) - Method in class edu.unh.sdb.lattice.Point
Returns true if this Point is contained by the ISBounds parameter, or false otherwise.
containedBy(GBounds) - Method in class edu.unh.sdb.lattice.TriangleCell
Returns true if this TriangleCell is contained by the GBounds argument, false otherwise.
containingOffset(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Map the index space id onto the partitioning space and return the 1D offset of the containing partition.
contains(String) - Method in class edu.unh.sdb.common.MetadataCollection
Returns true if this collection contains a Metadata object with the given name.
contains(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ComponentInfo
If this component contains the given IndexSpaceID, returns true
contains(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Returns true if this Bounds completely contains the argument bounds.
contains(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Returns true if this Bounds contains the coordinates contained in the integer array.
contains(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Returns true if this Bounds contains the coordinates contained in the integer array.
contains(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISIDMapper
Check if the given IndexSpaceID is contained by this component
contains(GBounds) - Method in class edu.unh.sdb.lattice.GBounds
Returns true if this Bounds completely contains the argument bounds.
contains(Point) - Method in class edu.unh.sdb.lattice.GBounds
Returns true if this Bounds contains the argument Point.
contains(float[]) - Method in class edu.unh.sdb.lattice.GBounds
Returns true if this Bounds contains the coordinates contained in the integer array.
containsExcludeUpper(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Returns true if this Bounds contains the coordinates represented in the integer array.
containsExcludeUpper(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Returns true if this Bounds contains the coordinates represented in the IndexSpaceID.
containsKey(String) - Method in class edu.unh.sdb.common.Metadata
Returns true if contains a property for the given key.
convert(Datum, byte[], int) - Method in class edu.unh.sdb.datasource.TransferFunction
 
convert(Values, byte[]) - Method in class edu.unh.sdb.datasource.TransferFunction
 
coordinateFileName - Variable in class edu.unh.sdb.lattice.FDLGroup
 
coords - Variable in class edu.unh.sdb.lattice.Cell
 
coords - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
coords - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
coordsRS - Variable in class edu.unh.sdb.lattice.FileCellGroup
 
copy() - Method in class edu.unh.sdb.common.AttributeDescriptor
Clones the object and returns a reference to a cloned AttributeDescriptor.
copy() - Method in class edu.unh.sdb.common.RecordDescriptor
Make a copy of this RecordDescriptor.
copy() - Method in class edu.unh.sdb.datasource.ARRSClippedCopyLeafNode
copy method creates references to all components, not copies.
copy() - Method in class edu.unh.sdb.datasource.ARRSCopyLeafNode
copy method creates references to all components, not copies.
copy() - Method in class edu.unh.sdb.datasource.ARRSNode
Abstract clone method
copy() - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns a copy of this AxisOrdering.
copy() - Method in class edu.unh.sdb.datasource.ISBounds
Return a copy of this ISBounds object
copy(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use set( ISBounds )
copy() - Method in class edu.unh.sdb.datasource.ISIterator
Deprecated. 
copy() - Method in class edu.unh.sdb.datasource.KDNode
copy method creates references to all components, not copies.
copy() - Method in class edu.unh.sdb.datasource.NTreeNode
copy method creates references to all components, not copies.
copy() - Method in class edu.unh.sdb.lattice.GBounds
Return a copy of this GBounds object
copyAndMove(ISBounds, int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use setAndMove( ISBounds, int[] )
copyAndMove(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Create a copy of this bounds moved by the relative amount specified by the argument.
copyAndMoveCenterTo(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Create a copy of this bounds moved the center to the specified location.
copyAndMoveCenterTo(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Create a copy of this bounds moved the center to the specified location.
copyAndMoveTo(ISBounds, int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use setAndMoveTo( ISBounds, int[] )
copyAndMoveTo(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Create a copy of this bounds moved the lower left corner to the specified location.
copyAndMoveToOrigin(ISBounds) - Static method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use bounds.copyToOrigin( )
copyAndMoveToOrigin(GBounds) - Static method in class edu.unh.sdb.lattice.GBounds
Returns a new GBounds of the same shape as the argument bounds, but moved to the origin.
copyBestID(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataSource
/** Make a copy of the argument using a chosen subclass of IndexSpaceID.
copyBounds() - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Return a simple ISBounds corresponding to the current value of this iterator.
copyBounds() - Method in class edu.unh.sdb.datasource.DataCollection
Returns a copy of the bounds of the Index Space for this DataSource.
copyBounds() - Method in interface edu.unh.sdb.datasource.Indexable
 
copyBounds() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return a simple ISBounds corresponding to the current value of this iterator.
copyBounds() - Method in class edu.unh.sdb.lattice.GBounds
Return a copy of this GBounds object.
copyBounds() - Method in class edu.unh.sdb.lattice.GBoundsGapIterator
Return a simple GBounds corresponding to the current value of this iterator.
copyBounds() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Return a simple GBounds corresponding to the current value of this iterator.
copyData(int, int, int[], int[]) - Method in class edu.unh.sdb.datasource.BasicBlock
 
copyData(int, int, int[]) - Method in class edu.unh.sdb.datasource.BasicBlock
 
copyData(int, int, int) - Method in class edu.unh.sdb.datasource.BasicBlock
 
copyExpandBy(int) - Method in class edu.unh.sdb.datasource.ISBounds
Return a new ISBounds that has upper and lower coordinates that are moved outward by the specified distance.
copyExpandByFactor(int) - Method in class edu.unh.sdb.datasource.ISBounds
Return a new ISBounds that has upper and lower coordinates that have been expanded by a given multiple.
copyID() - Method in class edu.unh.sdb.datasource.IndexSpaceID
Makes a copy of an IndexSpaceID object that is guaranteed not to copy iterator information in the case that the object is actually an iterator.
copyID() - Method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
Return a copy of this IndexSpaceID.
copyID() - Method in class edu.unh.sdb.datasource.ISIterator
Return an IntegerIndexSpaceID corresponding to the current position.
copyID() - Method in class edu.unh.sdb.datasource.PackedIndexSpaceID
Return a copy of this IndexSpaceID.
copyID() - Method in class edu.unh.sdb.lattice.GIterator
Return a Point corresponding to the current position.
copyIncreasedBy(int) - Method in class edu.unh.sdb.datasource.ISBounds
Return a new ISBounds that has upper coordinates that are increased by the specified amount from the upper coordinates of this ISBounds.
copyLower(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use setLower( int [] )
copyLower() - Method in class edu.unh.sdb.datasource.ISBounds
Return an IndexSpaceID representing the lower bounds.
copyLowerArray() - Method in class edu.unh.sdb.datasource.ISBounds
Return a reference to the integer array representing the lower bounds.
copyLowerArray(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Copy the lower bound coordinates into the array argument.
copyReducedBy(int) - Method in class edu.unh.sdb.datasource.ISBounds
Return a new ISBounds that has upper coordinates that are reduced by the specified amount from the upper coordinates of this ISBounds.
copyScaled(double[]) - Method in class edu.unh.sdb.datasource.ISBounds
Return a new ISBounds with dimensions that have been scaled by the the argument array.
copyScaled(float[]) - Method in class edu.unh.sdb.datasource.ISBounds
Return a new ISBounds with dimensions that have been scaled by the the argument array.
copyScaled(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Return a new ISBounds with dimensions that have been scaled by the the argument array.
copyShrinkBy(int) - Method in class edu.unh.sdb.datasource.ISBounds
Return a new ISBounds that has upper and lower coordinates that are moved inward by the specified distance.
copyShrinkByFactor(int) - Method in class edu.unh.sdb.datasource.ISBounds
Return a new ISBounds that has upper and lower coordinates that have been reduced by a given multiple.
copyTo(ByteDatum) - Method in class edu.unh.sdb.common.ByteDatum
Copy the values of this ByteDatum object into the argument datum.
copyTo(Datum) - Method in class edu.unh.sdb.common.ByteDatum
Copy the values of this ByteDatum object into the argument datum.
copyTo(Datum) - Method in class edu.unh.sdb.common.Datum
Copy the values of this Datum object into the argument datum.
copyTo(DoubleDatum) - Method in class edu.unh.sdb.common.DoubleDatum
Copy the values of this DoubleDatum object into the argument datum.
copyTo(Datum) - Method in class edu.unh.sdb.common.DoubleDatum
Copy the values of this DoubleDatum object into the argument datum.
copyTo(FloatDatum) - Method in class edu.unh.sdb.common.FloatDatum
Copy the values of this FloatDatum object into the argument datum.
copyTo(Datum) - Method in class edu.unh.sdb.common.FloatDatum
Copy the values of this FloatDatum object into the argument datum.
copyTo(IntDatum) - Method in class edu.unh.sdb.common.IntDatum
Copy the values of this IntDatum object into the argument datum.
copyTo(Datum) - Method in class edu.unh.sdb.common.IntDatum
Copy the values of this IntDatum object into the argument datum.
copyTo(MixedDatum) - Method in class edu.unh.sdb.common.MixedDatum
Copy the values of this MixedDatum object into the argument datum.
copyTo(Datum) - Method in class edu.unh.sdb.common.MixedDatum
Copy the values of this MixedDatum object into the argument datum.
copyTo(ShortDatum) - Method in class edu.unh.sdb.common.ShortDatum
Copy the values of this ShortDatum object into the argument datum.
copyTo(Datum) - Method in class edu.unh.sdb.common.ShortDatum
Copy the values of this ShortDatum object into the argument datum.
copyTo(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
create a new ISBounds from this one with lower bounds at specified IndexSpace position and upper bounds defined by the size of this ISBounds.
copyTo(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
create a new ISBounds from this one with lower bounds at specified position and upper bounds defined by the size of this ISBounds.
copyToOrigin() - Method in class edu.unh.sdb.datasource.ISBounds
create a new ISBounds from this one with lower bounds at the origin, and upper bounds defined by the size of this ISBounds.
copyUpper(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use setUpper( int [] ) "this" is returned for convenience of use.
copyUpper() - Method in class edu.unh.sdb.datasource.ISBounds
Return an IndexSpaceID representing the upper bounds.
copyUpperArray() - Method in class edu.unh.sdb.datasource.ISBounds
Return a copy of the integer array representing the upper bounds.
copyUpperArray(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Copy the upper bound coordinates into the array argument.
count - Variable in class edu.unh.sdb.common.RecordDescriptor.TypeCount
 
count() - Static method in class edu.unh.sdb.datasource.AppMonitor
 
create(double) - Static method in class edu.unh.sdb.common.Datum
Create a single attribute Datum composed of 1 double.
create(double[]) - Static method in class edu.unh.sdb.common.Datum
Create a multi attribute Datum composed of double attributes.
create(float) - Static method in class edu.unh.sdb.common.Datum
Create a single attribute Datum composed of 1 float.
create(float[]) - Static method in class edu.unh.sdb.common.Datum
Create a multi attribute Datum composed of double attributes.
create(int) - Static method in class edu.unh.sdb.common.Datum
Create a single attribute Datum composed of 1 int.
create(int[]) - Static method in class edu.unh.sdb.common.Datum
Create a multi attribute Datum composed of int attributes.
create(short) - Static method in class edu.unh.sdb.common.Datum
Create a single attribute Datum composed of 1 short.
create(short[]) - Static method in class edu.unh.sdb.common.Datum
Create a multi attribute Datum composed of short attributes.
create(byte) - Static method in class edu.unh.sdb.common.Datum
Create a single attribute Datum composed of 1 byte.
create(byte[]) - Static method in class edu.unh.sdb.common.Datum
Create a multi attribute Datum composed of byte attributes.
create(RecordDescriptor) - Static method in class edu.unh.sdb.common.Datum
Create a multi attribute Datum composed of mixed type attributes.
create(RecordDescriptor, RecordSpec) - Static method in class edu.unh.sdb.common.Datum
Create a multi attribute Datum composed of mixed type attributes.
create(Vector3d) - Method in class edu.unh.sdb.common.EulerAngles
 
create(double, double, double) - Method in class edu.unh.sdb.common.EulerAngles
 
create(FieldIDMapper) - Method in class edu.unh.sdb.common.RecordDescriptor
Makes a new RecordDescriptor object from "this" RecordDescriptor and the FieldIDMapper.
create(RecordSpec) - Method in class edu.unh.sdb.common.RecordDescriptor
Makes a new RecordDescriptor object from "this" RecordDescriptor and the RecordSpec.
create(String, String) - Static method in class edu.unh.sdb.datasource.DataSource
Creates and returns a DataSource.
create(String, String, String) - Static method in class edu.unh.sdb.datasource.DataSource
Creates and returns a RemoteBFDS where the fileServerURL argument identifies the location of the DataSource
create(String, FDLDescriptor) - Static method in class edu.unh.sdb.datasource.DataSource
Creates and returns a PhysicalDataSource, given an FDLDescriptor that has already been initialized from an FDL file and an arbitrary name for the datasource.
create(String) - Static method in class edu.unh.sdb.datasource.FDLDescriptor
Factory method pattern to create.
createAtOrigin(IndexSpaceID) - Static method in class edu.unh.sdb.datasource.ISBounds
create a new ISBounds with lower bounds at the origin, and upper bounds with the specified IndexSpaceID.
createAtOrigin(int[]) - Static method in class edu.unh.sdb.datasource.ISBounds
Create a new ISBounds with lower bounds at the origin, and upper bounds with coordinates corresponding to the integer array argument.
createAttrDescriptorArray(String) - Static method in class edu.unh.sdb.common.RecordDescriptor
Create an array of AttributeDescriptors whose types are identified by the individual characters in the argument String.
createAttrDescriptorArray(char, int) - Static method in class edu.unh.sdb.common.RecordDescriptor
Create an array of AttributeDescriptors whose types are identified by a single char argument indicating type and an attr count.
createCacheDS(DataSource, ISIterator, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createCacheDS(DataSource, ISBounds, AxisOrdering, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createCacheDS(DataSource, ISBoundsIterator, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createCacheDS(ChunkedDataSource, ISIterator, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createCacheDS(ObliquePlaneIteratorInterface, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createCacheDS(ObliquePlaneIteratorInterface, long, boolean) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createCacheDS(ObliquePlaneIteratorInterface, int[], long) - Static method in class edu.unh.sdb.datasource.CacheMaker
Create a MultiBlockCache for the given ObliquePlaneIterator using cache blocks of the specified dimensions.
createCacheDS(ObliquePlaneIteratorInterface, int[], long, boolean) - Static method in class edu.unh.sdb.datasource.CacheMaker
Create a MultiBlockCache for the given ObliquePlaneIterator using cache blocks of the specified dimensions.
createCentered(ISBounds, IndexSpaceID) - Static method in class edu.unh.sdb.datasource.ISBounds
Create a new ISBounds with its center at the ISID specified by the second argument and whose dimensions are the same as the dimensions of the 1st argument.
createCentered(IndexSpaceID, IndexSpaceID) - Static method in class edu.unh.sdb.datasource.ISBounds
Create a new ISBounds with its center at the ISID specified by the second argument and whose dimensions are the same as the dimensions of the 1st argument.
createCentered(int[], int[]) - Static method in class edu.unh.sdb.datasource.ISBounds
Create a new ISBounds with its center at the ISID specified by the second argument and whose dimensions are given by the 1st argument.
createComponentInfos(DataSource[], FieldIDMapper[], ISBounds[], ISBounds) - Static method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Creates an array of ComponentInfo from the given information for each component.
createComponentMap(FieldIDMapper, FieldIDMapper) - Static method in class edu.unh.sdb.common.FieldIDMapper
Constructs a FieldIDMapper by composing two related FieldIDMappers.
createCrossMap(FieldIDMapper, FieldIDMapper) - Static method in class edu.unh.sdb.common.FieldIDMapper
Constructs a FieldIDMapper by composing two related FieldIDMappers.
createDataBlock(ISBounds) - Method in class edu.unh.sdb.common.RecordDescriptor
Creates a DataBlock that would be efficient to use for this RecordDescriptor.
createDataBlock(ISBounds, RecordSpec) - Method in class edu.unh.sdb.common.RecordDescriptor
Creates a DataBlock that would be efficient to use for a subset of this RecordDescriptor, based on the RecordSpec.
createDataBlock(ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.common.RecordDescriptor
Creates a DataBlock that would be efficient to use for a subset of this RecordDescriptor, based on the FieldIDMapper.
createDataBlock(ISBounds) - Method in class edu.unh.sdb.datasource.DataCollection
create a DataBlock matching RecordDescriptor.
createDataBlock(ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.DataCollection
create a DataBlock matching RecordDescriptor, adjusted by RecordSpec.
createDataBlock(ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataCollection
create a DataBlock matching RecordDescr adjusted by FieldIDMapper.
createDatum() - Method in class edu.unh.sdb.common.RecordDescriptor
Returns a Datum of an appropriate type.
createDatum(RecordSpec) - Method in class edu.unh.sdb.common.RecordDescriptor
Returns a Datum of an appropriate type as constrained by RecordSpec.
createDatum(FieldIDMapper) - Method in class edu.unh.sdb.common.RecordDescriptor
Returns a Datum of an appropriate type.
createDatum(Datum) - Method in class edu.unh.sdb.common.RecordDescriptor
Returns a Datum of an appropriate type, initialized to the values of the passed in argument Datum.
createDatum(Datum, RecordSpec) - Method in class edu.unh.sdb.common.RecordDescriptor
Returns a Datum of an appropriate type, initialized to the values of the passed in argument Datum.
createDatum(Datum, FieldIDMapper) - Method in class edu.unh.sdb.common.RecordDescriptor
Returns a Datum of an appropriate type, initialized to the values of the passed in argument Datum.
createDatum() - Method in class edu.unh.sdb.datasource.DataCollection
create a Datum matching RecordDescriptor.
createDatum(RecordSpec) - Method in class edu.unh.sdb.datasource.DataCollection
create a Datum matching RecordDescriptor, adjusted by RecordSpec.
createDatum(FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataCollection
create a Datum matching RecordDescriptor, adjusted by FieldIDMapper.
createDatum(Datum) - Method in class edu.unh.sdb.datasource.DataCollection
create a Datum matching RecordDescriptor, initialized to Datum value.
createDatum(Datum, RecordSpec) - Method in class edu.unh.sdb.datasource.DataCollection
create a Datum matching RecordDescriptor, based or RecordSpec, init to Datum.
createDatum(Datum, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataCollection
create a Datum matching RecordDescriptor, based on FieldIDMapper, init to Datum.
createDatum() - Method in class edu.unh.sdb.datasource.TransferFunction
 
createDB(String) - Method in class edu.unh.sdb.mdb.DBIF
 
createDefault(DataSource) - Static method in class edu.unh.sdb.datasource.TransferFunction
 
createPrefetchIterator(ISBounds, ISBounds, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
createRemote(String, FDLDescriptor, String) - Static method in class edu.unh.sdb.datasource.DataSource
Creates and returns a RemoteBFDS where the fileServerURL argument identifies the location of the DataSource
createRemote(String, String, String) - Static method in class edu.unh.sdb.datasource.DataSource
Creates and returns a RemoteBFDS where the fileServerURL argument identifies the location of the DataSource
createRemoteClient(String, FDLDescriptor, String) - Static method in class edu.unh.sdb.datasource.DataSource
 
createRemoteClient(String, String, String) - Static method in class edu.unh.sdb.datasource.DataSource
 
createRemoteDataSource(String, String, String) - Static method in class edu.unh.sdb.datasource.DataSource
 
createRemoteDataSource(String, FDLDescriptor, String) - Static method in class edu.unh.sdb.datasource.DataSource
 
createRemoteDataSourceUDP(FDLDescriptor, String, String) - Static method in class edu.unh.sdb.datasource.DataSource
 
createRemoteUDP(String, FDLDescriptor, String) - Static method in class edu.unh.sdb.datasource.DataSource
 
createRemoteUDP(String, String, String) - Static method in class edu.unh.sdb.datasource.DataSource
 
createTable() - Method in class edu.unh.sdb.mdb.DBIF
create tables
createThreadedCacheDS(DataSource, ISIterator, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createThreadedCacheDS(DataSource, ISBoundsIterator, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createThreadedSliceCacheDS(DataSource, ISIterator, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createThreadedSliceCacheDS(DataSource, ISBounds, int, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createThreadedSliceCacheDS(DataSource, ISBoundsIterator, long) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
createValues(int) - Method in class edu.unh.sdb.common.RecordDescriptor
Create a Values object of the appropriate type and size for this RecordDescriptor numEntries is the number of data points, so if there are multiple attributes there needs to be space for all of them
ctrlMsg - Variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
curLevel() - Method in class edu.unh.sdb.datasource.MRDataSource
int curLevel()
currentOffset - Variable in class edu.unh.sdb.datasource.OneDDataSink
 
currentPoint - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
currentStep - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
curWhich() - Method in class edu.unh.sdb.datasource.MRDataSource
int curWhich()

D

data() - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Return a reference to the actual array containing the data.
data() - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Return a reference to the actual array containing the data.
data - Variable in class edu.unh.sdb.datasource.Cell
 
data() - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Return a reference to the actual array containing the data.
data - Variable in class edu.unh.sdb.lattice.Cell
 
data - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
data - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
data - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
DataArray - Class in edu.unh.sdb.common
 
DataArray(int[]) - Constructor for class edu.unh.sdb.common.DataArray
 
DataArray(int[], AxisOrdering) - Constructor for class edu.unh.sdb.common.DataArray
 
DataBlock - Class in edu.unh.sdb.datasource
An abstract parent class for datablocks--used to transport blocks of data around the system
DataBlock() - Constructor for class edu.unh.sdb.datasource.DataBlock
Empty Constructor
DataBlock(ISBounds, AxisOrdering, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DataBlock
Deprecated.
Use DataBlock( ISBounds, RecordDescriptor, AxisOrdering )
DataBlock(ISBounds, RecordDescriptor, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.DataBlock
Construct a datablock with the given bounds, axis axisOrdering and RecordDescriptor.
DataBlock(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DataBlock
Construct a datablock with the given bounds and number of attributes.
DataBlock(DataBlock) - Constructor for class edu.unh.sdb.datasource.DataBlock
Construct a DataBlock from the given DataBlock.
DataBlockCollection - Class in edu.unh.sdb.datasource
Represents a list of DataBlocks.
DataBlockCollection(int, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DataBlockCollection
 
DataBlockProxy - Class in edu.unh.sdb.datasource
 
DataBlockProxy() - Constructor for class edu.unh.sdb.datasource.DataBlockProxy
 
DataBlockProxy(ISBounds, RecordDescriptor, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.DataBlockProxy
 
DataBlockProxy(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DataBlockProxy
 
dataBytesUsed - Variable in class edu.unh.sdb.datasource.DSArrayStencil
 
dataBytesUsed - Variable in class edu.unh.sdb.datasource.DSBlockStencil
 
DataCollection - Class in edu.unh.sdb.datasource
 
DataCollection() - Constructor for class edu.unh.sdb.datasource.DataCollection
For now, prevent construction without knowledge of bounds, exc by children
DataCollection(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DataCollection
Create a DataCollection with given bounds and record descriptor.
DataCollection(ISBounds, RecordDescriptor, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.DataCollection
Create a DataCollection with given bounds, record descriptor, and axisordering
dataFile - Variable in class edu.unh.sdb.datasource.TextFileDataSource
 
dataFileName - Variable in class edu.unh.sdb.lattice.FDLGroup
 
dataFileName(String, IndexSpaceID) - Static method in class edu.unh.sdb.lattice.FileCellGroupGrid
 
dataFileName(String, IndexSpaceID) - Static method in class edu.unh.sdb.lattice.FileSplitterCellGroupGrid
 
dataFileType - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Declares the file type
dataFileURL - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Declares the file name (URL) where the data is located
dataOrder - Variable in class edu.unh.sdb.datasource.DataCollection
Defines the preferred data order -- either by attribute or by point.
dataRS - Variable in class edu.unh.sdb.lattice.FileCellGroup
 
DataSink - Class in edu.unh.sdb.datasource
 
DataSink(String, RecordDescriptor, ISBounds) - Constructor for class edu.unh.sdb.datasource.DataSink
 
DataSink(String, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DataSink
 
DataSource - Class in edu.unh.sdb.datasource
The DataSource class provides a provides a view of the data in which each datum has a unique location within an N-dimensional index space.
DataSource(String) - Constructor for class edu.unh.sdb.datasource.DataSource
Default constructor.
DataSource(String, RecordDescriptor, ISBounds) - Constructor for class edu.unh.sdb.datasource.DataSource
Constructor sets the bounds and recordDesc members to the provided values.
DataSource(String, ISBounds) - Constructor for class edu.unh.sdb.datasource.DataSource
Constructor sets the bounds member to the provided value and the recordDesc member to a single float attribute.
DataSource(DataSource) - Constructor for class edu.unh.sdb.datasource.DataSource
Constructor sets all data members to copies of the corresponding members from the argument DataSource.
DATASOURCE - Static variable in class edu.unh.sdb.mdb.Table
define table name
DataSourceBuilder - Class in edu.unh.sdb.datasource
Manufactures Logical DataSource objects such AttributeJoin and Blocked DataSources.
DataSourceBuilder(DataSourceCollection, String) - Constructor for class edu.unh.sdb.datasource.DataSourceBuilder
Default Constructor
DataSourceCollection - Class in edu.unh.sdb.datasource
The DataSourceCollection class provides for a list of datasources with customary list functionality.
DataSourceCollection() - Constructor for class edu.unh.sdb.datasource.DataSourceCollection
 
datasources - Variable in class edu.unh.sdb.datasource.DSRecordSpec
 
DataSourceServer - Class in edu.unh.sdb.datasource
 
dataTokens - Variable in class edu.unh.sdb.datasource.TextFileDataSource
 
Datum - Class in edu.unh.sdb.common
Represents multiple data values (attributes) for a single point in the index space.
Datum() - Constructor for class edu.unh.sdb.common.Datum
Default constructor does nothing.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.AliasDataSource
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.AliasDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.AliasDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ARBlock
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ARBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.ARBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Given an IndexSpaceID, return the corresponding datum.
datum(Datum, int[]) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Given an array of coordinates, copy the corresponding datum into the first parameter.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Given an IndexSpaceID, return the corresponding datum with attributes specified in the RecordSpec.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Overrides from DataSource.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
This datum method returns values of a subset of all the attributes.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Return the Datum by reference
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Deprecated. 
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Reads a subset of the DataSource attributes specified by the RecordSpec argument to the Datum argument defined by IndexSpaceID did.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.AttributeOrderBFDS
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.AttributeOrderBFDS
Load the data at the given index into the provided datum.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.AttributeOrderBFDS
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.AttributeOrderBFDS
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.AttributeOrderBFDS
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.BasicBlock
Given an IndexSpaceID, return the corresponding datum.( this only works for float implementation )
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.BasicBlock
Given IndexSpaceID, load the corresponding datum into the datum argument.
datum(Datum, int[]) - Method in class edu.unh.sdb.datasource.BasicBlock
Given an array of coordinates, load the corresponding datum into the datum argument.
datum(ShortDatum, int[]) - Method in class edu.unh.sdb.datasource.BasicBlock
Given an array of coordinates, load the corresponding datum into the datum argument.
datum(ByteDatum, int[]) - Method in class edu.unh.sdb.datasource.BasicBlock
Given an array of coordinates, load the corresponding datum into the datum argument.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.BasicBlock
Given an IndexSpaceID, return the corresponding datum with attributes specified in the RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.BasicBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.BasicBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.BlockedDataSource
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.BlockedDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.BlockedDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.BlockManager
Pass by reference datum method.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.BlockManager
Pass by reference datum method.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.BlockManager
Pass by reference datum method.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.BlockManager
Deprecated. 
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.BlockManager
Deprecated. 
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.CacheDataSource
Load the data at the given index into the provided datum.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.CacheDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.CacheDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ChunkedDataSource
load the data from the data source into the argument datum
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ChunkedDataSource
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.CompositeBlock
Given an IndexSpaceID, return the corresponding datum.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.CompositeBlock
Given IndexSpaceID, load the corresponding datum into the datum argument.
datum(Datum, int[]) - Method in class edu.unh.sdb.datasource.CompositeBlock
Given an array of coordinates, load the corresponding datum into the datum argument.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.CompositeBlock
Given an IndexSpaceID, return the corresponding datum with attributes specified in the RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.CompositeBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.CompositeBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataBlockProxy
 
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataBlockProxy
 
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataCollection
Given an IndexSpaceID, return the corresponding datum.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.DataCollection
Given an IndexSpaceID, return the corresponding datum with attributes specified in the RecordSpec.
datum(IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataCollection
Given an IndexSpaceID, return the corresponding datum with attributes specified in the FieldIDMapper.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataCollection
Given an IndexSpaceID, copy the values of the Datum at that position to the argument Datum.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataCollection
Given an IndexSpaceID and FieldIDMapper, copy the values of the Datum at that position to the argument Datum.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.DataCollection
Given an IndexSpaceID and RecordSpec, copy the values of the Datum at that position to the argument Datum.
datum(Datum, int[]) - Method in class edu.unh.sdb.datasource.DataCollection
Copy the Datum argument into the position indicated by the values in the int coordArray interpreted as an IndexSpaceID.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Given an IndexSpaceID, return the corresponding datum.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Given an array of coordinates, load the corresponding datum into the datum argument.
datum(Datum, int[]) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Given an array of coordinates, load the corresponding datum into the datum argument.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Given an IndexSpaceID, return the corresponding datum with attributes specified in the RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
Given an IndexSpaceID, copy the values of the Datum at that position to the argument Datum.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
Given an IndexSpaceID and FieldIDMapper, copy the values of the Datum at that position to the argument Datum.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.DynamicChunking
 
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DynamicChunking
not implemented
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID) - Method in interface edu.unh.sdb.datasource.Indexable
 
datum(IndexSpaceID, RecordSpec) - Method in interface edu.unh.sdb.datasource.Indexable
 
datum(Datum, IndexSpaceID) - Method in interface edu.unh.sdb.datasource.Indexable
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in interface edu.unh.sdb.datasource.Indexable
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in interface edu.unh.sdb.datasource.Indexable
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.MRDataSource
 
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.MRDataSource
 
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.MultiBlockCacheDataSource
Load the data at the given index into the provided datum.
datum - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Given an IndexSpaceID, return the corresponding datum.
datum(Datum, int[]) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Given an array of coordinates, copy the corresponding datum into the first parameter.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Given an IndexSpaceID, return the corresponding datum with attributes specified in the RecordSpec.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.PointOrderBFDS
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.PointOrderBFDS
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.PointOrderBFDS
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.PointOrderBFDS
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RayCellIterator
Given an IndexSpaceID, return the corresponding datum.
datum(Datum, int[]) - Method in class edu.unh.sdb.datasource.RayCellIterator
Given an array of coordinates, copy the corresponding datum into the first parameter.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RayCellIterator
 
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RayCellIterator
 
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.RayCellIterator
 
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RayCellIterator
Given an IndexSpaceID, return the corresponding datum with attributes specified in the RecordSpec.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegCellDataSource
PBR: Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RegCellDataSource
PBR: Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RegCellDataSource
PBR: Return by reference the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RemoteBFDS
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.RemoteBFDS
 
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RemoteBFDS
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RemoteBFDS
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RemoteBFDS
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding IndexSpaceID coordinates.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.SparseDataSource
Given an IndexSpaceID and FieldIDMapper, copy the values of the Datum at that position to the argument Datum.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.SparseDataSource
Given an IndexSpaceID and FieldIDMapper, copy the values of the Datum at that position to the argument Datum.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.StatsDataSource
Given an IndexSpaceID and FieldIDMapper, copy the values of the Datum at that position to the argument Datum.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.TextFileDataSource
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.TextFileDataSource
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.TextFileDataSource
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.TextFileDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.TextFileDataSource
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.URCellBlock
Given an IndexSpaceID, return the corresponding datum.
datum(Datum, int[]) - Method in class edu.unh.sdb.datasource.URCellBlock
Given an array of coordinates, copy the corresponding datum into the first parameter.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.URCellBlock
Given an IndexSpaceID, return the corresponding datum with attributes specified in the RecordSpec.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.URCellBlock
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.URCellBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.URCellBlock
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(Datum, int[]) - Method in class edu.unh.sdb.datasource.VRDataBlock
Given an array of coordinates, copy the correspoinding datum int the first parameter
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.VRDataBlock
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.VRDataBlock
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.VRDataBlock
Return by reference the Datum correspoinding to the given ndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.VRDataBlock
PBR: Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.VRDataBlock
PBR: Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.VRDataSource
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.VRDataSource
Return the Datum corresponding to the given IndexSpaceID.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.VRDataSource
Return the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.VRDataSource
PBR: Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.VRDataSource
PBR: Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.VRIndexable
Return by reference the Datum corresponding to the given IndexSpaceID.
datum(Datum, IndexSpaceID, FieldIDMapper) - Method in class edu.unh.sdb.datasource.VRIndexable
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding FieldIDMapper.
datum(Datum, IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.VRIndexable
Get the Datum and fill its values in the passed Datum at positions specified by the corresponding RecordSpec.
datum(IndexSpaceID) - Method in class edu.unh.sdb.datasource.VRIndexable
Return the Datum corresponding to the given IndexSpaceID and current resolution level, using the ISIDMapper.
datum(IndexSpaceID, RecordSpec) - Method in class edu.unh.sdb.datasource.VRIndexable
Return the attribute projected Datum corresponding to the given IndexSpaceID and current resolution level, using the ISIDMapper.
datum(int) - Method in class edu.unh.sdb.lattice.Cell
 
datum(Point) - Method in class edu.unh.sdb.lattice.Lattice
 
datum(Point) - Method in class edu.unh.sdb.lattice.MRLattice
 
datum(IndexSpaceID) - Method in class edu.unh.sdb.lattice.RectilinearTopology
return a datum corresponding to the IndexSpaceID argument.
datum(IndexSpaceID) - Method in class edu.unh.sdb.lattice.Topology
return a datum corresponding to the IndexSpaceID argument.
datum(IndexSpaceID) - Method in class edu.unh.sdb.lattice.UnstructuredTopology
return a datum corresponding to the IndexSpaceID argument.
DatumBlock - Class in edu.unh.sdb.datasource
Deprecated. 
DatumBlock(Datum[], ISBounds, AxisOrdering, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Construct a datablock with the given data, ISBounds, axis axisOrdering and RecordDescriptor.
DatumBlock(Datum[], ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Construct a datablock with the given data and ISBounds.
DatumBlock(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Construct a datablock with the given bounds and number of attributes.
datumCoords - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
datumCoords1 - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
datumSize - Variable in class edu.unh.sdb.datasource.DataSink
 
dbCache - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
DBIF - Class in edu.unh.sdb.mdb
 
DBIF() - Constructor for class edu.unh.sdb.mdb.DBIF
default constructor
DBIF(URL) - Constructor for class edu.unh.sdb.mdb.DBIF
constructor, set up database conection
DBIFList - Static variable in class edu.unh.sdb.mdb.DBIF
 
DBMAPPING - Static variable in class edu.unh.sdb.mdb.Table
define table name
dbName - Variable in class edu.unh.sdb.datasource.AliasDataSource
 
dbName - Variable in class edu.unh.sdb.datasource.ForeignReferenceDataSource
 
dbName - Variable in class edu.unh.sdb.mdb.URL
 
dBOUNDSID - Static variable in class edu.unh.sdb.mdb.Table
define the table fields
dbType - Variable in class edu.unh.sdb.mdb.URL
 
dbUrl - Variable in class edu.unh.sdb.mdb.DBIF
 
DCBoundsIterator - Class in edu.unh.sdb.datasource
 
DCBoundsIterator(DataCollection, ISBounds, int[], int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCBoundsIterator(DataCollection, ISBounds, int[], int[]) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCBoundsIterator(DataCollection, ISBounds, int[]) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCBoundsIterator(DataCollection, ISBounds, ISBounds) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCBoundsIterator(DataCollection, ISBounds, int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCBoundsIterator(DataCollection, ISBounds, ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCBoundsIterator(DataCollection, ISBounds, IntegerIndexSpaceID, int[], int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCBoundsIterator(DataCollection, ISBounds, IntegerIndexSpaceID, int[]) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCBoundsIterator(DataCollection, ISBounds, IntegerIndexSpaceID, int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCBoundsIterator(DataCollection, ISBounds, IntegerIndexSpaceID, int[], int[]) - Constructor for class edu.unh.sdb.datasource.DCBoundsIterator
 
DCIterator - Class in edu.unh.sdb.datasource
 
DCIterator(DataCollection, ISBounds) - Constructor for class edu.unh.sdb.datasource.DCIterator
 
DCIterator(DataCollection, ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.DCIterator
 
DCIterator(DataCollection, ISBounds, int[]) - Constructor for class edu.unh.sdb.datasource.DCIterator
 
DCIterator(DataCollection, ISBounds, AxisOrdering, int[]) - Constructor for class edu.unh.sdb.datasource.DCIterator
 
dDATASOURCETYPE - Static variable in class edu.unh.sdb.mdb.Table
define the table fields
dDES - Static variable in class edu.unh.sdb.mdb.Table
define the table fields
dDSID - Static variable in class edu.unh.sdb.mdb.Table
define the table fields
dDSNAME - Static variable in class edu.unh.sdb.mdb.Table
define the table fields
deactivate() - Method in class edu.unh.sdb.datasource.AliasDataSource
The DataSource will release any resources used during the readling or processing of data.
deactivate() - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
 
deactivate() - Method in class edu.unh.sdb.datasource.BinaryFileDataSource
Close the binary data file for this datasource, and the file can not be reopened
deactivate() - Method in class edu.unh.sdb.datasource.BufferedOneDDataSink
 
deactivate() - Method in class edu.unh.sdb.datasource.CacheDataSource
Calls deactivate() for the datasource backing this cache.
deactivate() - Method in class edu.unh.sdb.datasource.ChomboDataSource
Deactivates the data source by closing the file and clearing all variables.
deactivate() - Method in class edu.unh.sdb.datasource.ChunkedDataSource
The DataSource will release any resources used during the readling or processing of data.
deactivate() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Calls the deactivate method of all component datasources.
deactivate() - Method in class edu.unh.sdb.datasource.DataSink
 
deactivate() - Method in class edu.unh.sdb.datasource.DataSource
The DataSource will release any resources used during the readling or processing of data.
deactivate() - Method in class edu.unh.sdb.datasource.DynamicChunking
Dealocate all resources used for the DynamicChunking.
deactivate() - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
The DataSource will release any resources used during the readling or processing of data.
deactivate() - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Close the server socket on the client side.
deactivate() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
deactivate() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
The DataSource will release any resources used during the readling or processing of data.
deactivate() - Method in class edu.unh.sdb.datasource.RegCellDataSource
The DataSource will release any resources used during the readling or processing of data.
deactivate() - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Close the server socket on the client side.
deactivate() - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Close the server socket on the client side.
deactivate() - Method in class edu.unh.sdb.datasource.StatsDataSource
 
deactivate() - Method in class edu.unh.sdb.datasource.TextFileDataSource
Releases the datum array.
deactivate() - Method in class edu.unh.sdb.datasource.ThreadedBlockCacheDataSource
Calls super.deactivate() for the underlying datasource, and waits for any lingering IO threads to terminate.
deactivate() - Method in class edu.unh.sdb.datasource.ThreadedSliceCacheDataSource
Calls super.deactivate() for the underlying datasource, and waits for any lingering IO threads to terminate.
deactivate() - Method in class edu.unh.sdb.datasource.TimeSeries
Close time series; deactivate all steps
deactivate() - Method in class edu.unh.sdb.datasource.VRDataSource
The DataSource will release any resources used during the readling or processing of data.
decr() - Method in class edu.unh.sdb.datasource.VRDataBlock
Decrease Resolution Level by 1
decr() - Method in class edu.unh.sdb.datasource.VRDataSource
Decrease Resolution Level by 1
decr() - Method in class edu.unh.sdb.datasource.VRIndexable
Decrease Resolution Level by 1
DEFAULT_APPROXIMATOR - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote default approximator
DEFAULT_GEOMETRY - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote default topology
DEFAULT_TOPOLOGY - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote default topology
defaultComponent - Variable in class edu.unh.sdb.datasource.ChomboDataSource
 
defs - Variable in class edu.unh.sdb.common.RecordDescriptor
 
deleteBuffer(int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
delete a byte buffer and garbage collect.
deleteBuffer() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Delete all byte buffers used for data storage for this DataSource and garbage collect.
deleteBuffers() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Delete all byte buffers used for data storage for this DataSource and garbage collect.
dESDIM - Static variable in class edu.unh.sdb.mdb.Table
define the table fields
detach(URL) - Static method in class edu.unh.sdb.mdb.DBIF
 
dilatedFetchBounds - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
dim - Variable in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
dim() - Method in class edu.unh.sdb.common.Bounds
Return dimensionality of Bounds.
dim() - Method in class edu.unh.sdb.common.SpaceID
Returns the dimensionality of this SpaceID.
dim() - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns the length (number of dimensions) of the axisOrdering.
dim - Variable in class edu.unh.sdb.datasource.BlockManager
 
dim() - Method in class edu.unh.sdb.datasource.BlockManager
return the dimensionality of this BlockManager
dim() - Method in class edu.unh.sdb.datasource.Cell
Get the dimensionality of a cell
dim() - Method in class edu.unh.sdb.datasource.DataCollection
Returns the dimensionality of the Index Space for this DataSource.
dim() - Method in class edu.unh.sdb.datasource.DSStencil
Return the dimensionality of the stencil domain.
dim() - Method in interface edu.unh.sdb.datasource.Indexable
 
dim() - Method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
Returns the dimensionality of this IndexSpaceID.
dim() - Method in class edu.unh.sdb.datasource.ISBounds
Return dimensionality of Bounds.
dim() - Method in class edu.unh.sdb.datasource.ISIterator
Returns the dimensionality of this ISIterator.
dim() - Method in class edu.unh.sdb.datasource.ISPartitioning
 
dim() - Method in class edu.unh.sdb.datasource.PackedIndexSpaceID
Returns the dimensionality of this IndexSpaceID.
dim() - Method in class edu.unh.sdb.lattice.Cell
 
dim() - Method in class edu.unh.sdb.lattice.CellGroup
 
dim() - Method in class edu.unh.sdb.lattice.CellGroupGrid
 
dim() - Method in class edu.unh.sdb.lattice.GBounds
Return dimensionality of Bounds.
dim() - Method in class edu.unh.sdb.lattice.Geometry
returns dimensionality of the geometry
dim() - Method in class edu.unh.sdb.lattice.Partitioning
 
dim() - Method in class edu.unh.sdb.lattice.Point
Returns the dimensionality of this Point.
dim() - Method in class edu.unh.sdb.lattice.Topology
Return the dimensionality of this topology.
dimensionality - Variable in class edu.unh.sdb.datasource.Cell
 
dimensionality - Variable in class edu.unh.sdb.datasource.DataCollection
This value is taken from this.bounds, but is duplicated here for speed.
dimensionality - Variable in class edu.unh.sdb.datasource.DataSink
 
dimensionality - Variable in class edu.unh.sdb.datasource.DSStencil
 
dimensionality - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
dimensionality - Variable in class edu.unh.sdb.datasource.VRIndexable
 
dimensionality - Variable in class edu.unh.sdb.lattice.Cell
 
dimensionality - Variable in class edu.unh.sdb.lattice.CellGroup
 
dimensionality - Variable in class edu.unh.sdb.lattice.CellGroupGrid
 
dimensionality - Variable in class edu.unh.sdb.lattice.Geometry
 
dimensionality - Variable in class edu.unh.sdb.lattice.Partitioning
 
dimensionality - Variable in class edu.unh.sdb.lattice.Topology
 
DimensionalityError - Class in edu.unh.sdb.common
This error is used whenever an IndexSpaceID has an inappropriate dimensionality.
DimensionalityError(int, String) - Constructor for class edu.unh.sdb.common.DimensionalityError
Create an error with the specified error level and message.
DimensionalityException - Exception in edu.unh.sdb.common
This exception is thrown whenever an IndexSpaceID has an inappropriate dimensionality.
dimensions - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
DimResolution - Class in edu.unh.sdb.datasource
 
DimResolution() - Constructor for class edu.unh.sdb.datasource.DimResolution
Constructs a DimResolution without argument
DimResolution(IntegerIndexSpaceID, IntegerIndexSpaceID, IntegerIndexSpaceID) - Constructor for class edu.unh.sdb.datasource.DimResolution
Constructs a DimResolution with specified arguments
directMemoryLimit - Static variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
discardFlag - Variable in class edu.unh.sdb.common.TypeBuilder
 
discardFlag - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
datasource is not to be instantiated
discardFlag - Variable in class edu.unh.sdb.lattice.LatticeBuilder
flag to set if lattice is not to be instantiated
distance(Point) - Method in class edu.unh.sdb.lattice.Point
Compute the euclidean distance between this point and the argument.
divide(IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Pairwise divide this IndexSpaceID with 'other' and store the result in this.
dmDBID - Static variable in class edu.unh.sdb.mdb.Table
 
dmDBName - Static variable in class edu.unh.sdb.mdb.Table
 
dmDBType - Static variable in class edu.unh.sdb.mdb.Table
 
dmPassword - Static variable in class edu.unh.sdb.mdb.Table
 
dmUserName - Static variable in class edu.unh.sdb.mdb.Table
 
doc - Variable in class edu.unh.sdb.common.XMLReader
 
doneRegistering() - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
doneRegistering() - Method in class edu.unh.sdb.lattice.FileSplitterCellGroupGrid
 
Double - Static variable in class edu.unh.sdb.common.StorageType
 
DoubleDatum - Class in edu.unh.sdb.common
Represent multiple data values for a single point.
DoubleDatum(int) - Constructor for class edu.unh.sdb.common.DoubleDatum
Creates a null datum with the specified number of values.
DoubleDatum(double) - Constructor for class edu.unh.sdb.common.DoubleDatum
Deprecated. 
DoubleDatum(double[]) - Constructor for class edu.unh.sdb.common.DoubleDatum
Creates a datum with attributes containing the argument values.
DoubleDatum(double[], int, int) - Constructor for class edu.unh.sdb.common.DoubleDatum
Deprecated.
Not really; just looking for usage because of changed semantics (01/05)
DoubleDatum(int[]) - Constructor for class edu.unh.sdb.common.DoubleDatum
Creates a datum with attributes containing the argument values.
DoubleDatum(DoubleDatum) - Constructor for class edu.unh.sdb.common.DoubleDatum
Copy Constructor creates a copy of the argument datum.
DoubleDatum(Datum) - Constructor for class edu.unh.sdb.common.DoubleDatum
Copy Constructor creates a copy of the argument datum.
DoubleDatum(DoubleDatum[]) - Constructor for class edu.unh.sdb.common.DoubleDatum
This constructor creates a single DoubleDatum from an array of datums.
DoubleValues - Class in edu.unh.sdb.common
FloatValues is Values that store floats in a 1 D float array
DoubleValues() - Constructor for class edu.unh.sdb.common.DoubleValues
construct a DoubleValues with no data
DoubleValues(double[]) - Constructor for class edu.unh.sdb.common.DoubleValues
construct a DoubleValues for a given double array
DoubleValues(int) - Constructor for class edu.unh.sdb.common.DoubleValues
construct a DoubleValues the given number of doubles.
doubleValues() - Method in class edu.unh.sdb.common.DoubleValues
Deprecated.
Use getDataReference()
dRECORDID - Static variable in class edu.unh.sdb.mdb.Table
define the table fields
driver - Variable in class edu.unh.sdb.mdb.DBIF
 
dropTable() - Method in class edu.unh.sdb.mdb.DBIF
drop all the tables from database
ds - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
ds - Variable in class edu.unh.sdb.lattice.RectilinearTopology
 
dsAlias - Static variable in class edu.unh.sdb.mdb.Table
 
DSApproximator - Class in edu.unh.sdb.datasource
 
DSApproximator() - Constructor for class edu.unh.sdb.datasource.DSApproximator
Constructor without arguments
DSArrayStencil - Class in edu.unh.sdb.datasource
This is an implementation of a partitioned stencil that uses an array to maintain the record of active elements.
DSArrayStencil(RegularISPartitioning) - Constructor for class edu.unh.sdb.datasource.DSArrayStencil
Construct a stencil that identifies areas of interest using a partitioning.
DSBlockStencil - Class in edu.unh.sdb.datasource
This is an implementation of a partitioned stencil that associates a Datablock with active elements.
DSBlockStencil(RegularISPartitioning, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.DSBlockStencil
Construct a stencil that identifies areas of interest using a partitioning.
dsBuilder - Variable in class edu.unh.sdb.datasource.XDDLReader
 
dsDBName - Static variable in class edu.unh.sdb.mdb.Table
 
dsDSID - Static variable in class edu.unh.sdb.mdb.Table
 
dsList - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
table/list to hold the available datasources
dsList - Variable in class edu.unh.sdb.datasource.XDDLReader
declare a table/list to hold the actual datasources
DSListStencil - Class in edu.unh.sdb.datasource
This is an implementation of a partitioned stencil that uses a list of ISIDs to maintain the record of active elements.
DSListStencil(RegularISPartitioning) - Constructor for class edu.unh.sdb.datasource.DSListStencil
Construct a stencil that identifies areas of interest using a partitioning.
DSMAPPING - Static variable in class edu.unh.sdb.mdb.Table
define table name
dsName - Variable in class edu.unh.sdb.datasource.XDDLReader
 
dsName - Static variable in class edu.unh.sdb.mdb.Table
 
DSPartitionedStencil - Class in edu.unh.sdb.datasource
 
DSPartitionedStencil(RegularISPartitioning) - Constructor for class edu.unh.sdb.datasource.DSPartitionedStencil
 
DSPartitionedStencilIterator - Class in edu.unh.sdb.datasource
 
DSPartitionedStencilIterator(DSPartitionedStencil, DataSource) - Constructor for class edu.unh.sdb.datasource.DSPartitionedStencilIterator
 
DSRecordSpec - Class in edu.unh.sdb.datasource
 
DSRecordSpec(DataSource[], int[]) - Constructor for class edu.unh.sdb.datasource.DSRecordSpec
 
DSStencil - Class in edu.unh.sdb.datasource
 
DSStencil(ISBounds) - Constructor for class edu.unh.sdb.datasource.DSStencil
 
dstByteArray - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
dstByteArray - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
dstByteArray - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
DSThreadedPartitionedStencilIterator - Class in edu.unh.sdb.datasource
 
DSThreadedPartitionedStencilIterator(DSPartitionedStencil, DataSource) - Constructor for class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
 
DSThreadedPartitionedStencilIterator.IOThread - Class in edu.unh.sdb.datasource
 
dtdPath - Variable in class edu.unh.sdb.common.Configuration
 
dumpData() - Method in class edu.unh.sdb.datasource.DataSource
Write the values of the entire DataSource index space to a string in a nice format.
DynamicChunking - Class in edu.unh.sdb.datasource
Abstract class for a dynamic chunking data source that provides methods that either read data from memory if the block that contained it is loaded, or loads the block, eventually discards an already loaded block in LRU fashion and then returns the data from the loaded block.
DynamicChunking(DataSource) - Constructor for class edu.unh.sdb.datasource.DynamicChunking
Creates a DynamicChunking object which views a 'dataSource' through a DynamicChunking memory manager and it has the same interface as a DataSource.
DynamicChunking.BlockAccessCallback - Interface in edu.unh.sdb.datasource
 
DynamicChunking.CacheThrashingError - Error in edu.unh.sdb.datasource
 
DynamicChunking.CacheThrashingError() - Constructor for error edu.unh.sdb.datasource.DynamicChunking.CacheThrashingError
 

E

edu.unh.sdb.ARRSTreeBuilder - package edu.unh.sdb.ARRSTreeBuilder
 
edu.unh.sdb.common - package edu.unh.sdb.common
 
edu.unh.sdb.datasource - package edu.unh.sdb.datasource
 
edu.unh.sdb.lattice - package edu.unh.sdb.lattice
 
edu.unh.sdb.mdb - package edu.unh.sdb.mdb
 
elementOffset(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Return the 1D offset of the element specified by the id.
empty() - Method in class edu.unh.sdb.lattice.FileArrayCellGroup
Destroy references to cell data.
empty() - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
empty() - Method in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
Destroy references to cell data.
end() - Method in interface edu.unh.sdb.common.SDBIterator
Advance the iterator to the last valid value in the iteration.
end() - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Set the iterator value to the last valid value in the iteration.
end() - Method in class edu.unh.sdb.datasource.DSPartitionedStencilIterator
Advance the iterator to the last valid value in the iteration.
end() - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
Advance the iterator to the last valid value in the iteration.
end - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
end() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Set the iterator value to the last valid value in the iteration.
end() - Method in class edu.unh.sdb.datasource.ISIterator
Set the iterator value to the last valid value in the iteration.
end() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Advance the iterator to the last valid value in the iteration.
end() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
end() - Method in class edu.unh.sdb.datasource.RayIterator
 
end - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
end - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
end() - Method in class edu.unh.sdb.datasource.SliceIterator
 
end() - Method in class edu.unh.sdb.lattice.GBoundsGapIterator
Not implemented.
end() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Not implemented.
endian - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
endianness - Variable in class edu.unh.sdb.datasource.FDLDescriptor
 
endianness - Variable in class edu.unh.sdb.mdb.PDSDescriptor
 
endiannessList - Static variable in class edu.unh.sdb.datasource.XDDLReader
 
equal(Point) - Method in class edu.unh.sdb.lattice.Point
Return true if parameter is equal to this object, false otherwise.
equals(Object) - Method in class edu.unh.sdb.common.AttributeDescriptor
True if the argument is equal to this AttributeDescriptor, false otherwise.
equals(Object) - Method in class edu.unh.sdb.common.ByteDatum
Determine if the argument is a ByteDatum with the same set of data values.
equals(Object) - Method in class edu.unh.sdb.common.DoubleDatum
Determine if the argument is a DoubleDatum with the same set of data values.
equals(Object) - Method in class edu.unh.sdb.common.FieldIDMapper
Return true if parameter equals this object, false otherwise.
equals(Object) - Method in class edu.unh.sdb.common.FloatDatum
Determine if the argument is a FloatDatum with the same set of data values.
equals(Object) - Method in class edu.unh.sdb.common.IntDatum
 
equals(Object) - Method in class edu.unh.sdb.common.MixedDatum
Determine if the argument is a MixedDatum with the same set of data values.
equals(Object) - Method in class edu.unh.sdb.common.RangedType
 
equals(Object) - Method in class edu.unh.sdb.common.RecordDescriptor
True if the argument is equal to this AttributeDescriptor, false otherwise.
equals(Object) - Method in class edu.unh.sdb.common.ShortDatum
Determine if the argument is a ShortDatum with the same set of data values.
equals(Object) - Method in class edu.unh.sdb.common.Type
 
equals(Object) - Method in class edu.unh.sdb.common.UserType
 
equals(Object) - Method in class edu.unh.sdb.datasource.AttributeOrderBFDS
Returns true if this BinaryFileDataSource has the same pointOrder as the argument BinaryFileDataSource, as well as meeting inherited criteria for equality.
equals(Object) - Method in class edu.unh.sdb.datasource.BinaryFileDataSource
Returns true if this BinaryFileDataSource has the same pointOrder as the argument BinaryFileDataSource, as well as meeting inherited criteria for equality.
equals(ComponentInfo) - Method in class edu.unh.sdb.datasource.ComponentInfo
 
equals(Object) - Method in class edu.unh.sdb.datasource.CompositeDataSource
Return true if parameter equals this object, false otherwise.
equals(Object) - Method in class edu.unh.sdb.datasource.DataSource
Returns true if this DataSource has the same bounds and RecordDescriptor as the argument DataSource.
equals(Object) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Return true if the argument is an IndexSpaceID representing the same coordinates as this object, false otherwise.
equals(Object) - Method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
Return true if parameter is equal to this object, false otherwise.
equals(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Return true if parameter is equal to this object, false otherwise.
equals(ISIDMapper) - Method in class edu.unh.sdb.datasource.ISIDMapper
Return true if two ISIDMapper equal
equals(Object) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Returns true if this PhysicalDataSource has the same URL and AxisOrdering as the argument PhsyicalDataSource, as well as meeting inherited criteria for equality.
equals(Object) - Method in class edu.unh.sdb.datasource.PointOrderBFDS
Returns true if this BinaryFileDataSource has the same pointOrder as the argument BinaryFileDataSource, as well as meeting inherited criteria for equality.
equals(GBounds) - Method in class edu.unh.sdb.lattice.GBounds
Return true if parameter is equal to this object, false otherwise.
equalShape(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Return true if parameter has the same size in all dimensions as this object, false otherwise.
equalShapeAfterProject(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Returns true if the passed bounds has the same shape as this bounds after the higher dimensioned bounds is projected along any dimension that is of length 1.
equivalent(RangedType) - Method in class edu.unh.sdb.common.RangedType
Returns true if the argument is structurally equivalent to this RangedType, false otherwise.
error(SAXParseException) - Method in class edu.unh.sdb.common.XMLErrorHandler
 
EulerAngles - Class in edu.unh.sdb.common
Class that stores orientation using a set of Euler angles (heading,pitch,bank) and offers conversion routines to other ways of specifying orientation.
EulerAngles() - Constructor for class edu.unh.sdb.common.EulerAngles
Creates a new instance of EulerAngles
EulerAngles(double, double, double) - Constructor for class edu.unh.sdb.common.EulerAngles
 
EulerAngles(Vector3d) - Constructor for class edu.unh.sdb.common.EulerAngles
 
EulerAngles.Angle - Enum in edu.unh.sdb.common
 
EulerAnglesYXZ - Class in edu.unh.sdb.common
EulerAngles class for which heading rotates around Y axis, pitch rotates around X axis and bank rotates around Z axes.
EulerAnglesYXZ(double, double, double) - Constructor for class edu.unh.sdb.common.EulerAnglesYXZ
 
EulerAnglesYXZ(Vector3d) - Constructor for class edu.unh.sdb.common.EulerAnglesYXZ
 
EulerAnglesZYX - Class in edu.unh.sdb.common
EulerAngles class for which heading rotates around Z axis, pitch rotates around Y axis and bank rotates around X axes.
EulerAnglesZYX(double, double, double) - Constructor for class edu.unh.sdb.common.EulerAnglesZYX
 
EulerAnglesZYX(Vector3d) - Constructor for class edu.unh.sdb.common.EulerAnglesZYX
 
exceptionObject - Variable in class edu.unh.sdb.common.SDBError
 
expand(int) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use copyExpandBy( int )
expandByFactor(int) - Method in class edu.unh.sdb.datasource.ISBounds
Modifies this ISBounds with upper and lower coordinates that have been increased by a given multiple.
externalScratchID - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 

F

Fatal - Static variable in class edu.unh.sdb.common.SDBError
 
fatalError(SAXParseException) - Method in class edu.unh.sdb.common.XMLErrorHandler
 
fChannel - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
fdld - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
fdlDescriptor - Variable in class edu.unh.sdb.datasource.DataSource
 
FDLDescriptor - Class in edu.unh.sdb.datasource
The FDLDescriptor class holds data read from a file descriptor .fdl file The data will be read, validated and properly instantiated for use by the DataSource classes.
FDLDescriptor() - Constructor for class edu.unh.sdb.datasource.FDLDescriptor
Default Constructor sets the bounds and recordDesc members to default values.
FDLDescriptor(RecordDescriptor, ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.FDLDescriptor
Create an FDLDescriptor from a RecordDescriptor, Bounds, and AxisOrdering.
FDLDescriptor(RecordDescriptor, ISBounds, AxisOrdering, MetadataCollection) - Constructor for class edu.unh.sdb.datasource.FDLDescriptor
Create an FDLDescriptor from a RecordDescriptor, Bounds, AxisOrdering and Metadata.
fdlDescriptor - Variable in class edu.unh.sdb.datasource.XDDLReader
the FDLDescriptor that will hold all data for current FDL
fdlFileName - Variable in class edu.unh.sdb.datasource.FDLDescriptor
name of fdl file used to create this descriptor
fdlFileRoot - Variable in class edu.unh.sdb.datasource.FDLDescriptor
directory of fdl file used to create this descriptor (if created by file)
FDLGroup - Class in edu.unh.sdb.lattice
 
FDLGroup() - Constructor for class edu.unh.sdb.lattice.FDLGroup
Creates a new instance of FDLGroup
feedData(byte[]) - Method in class edu.unh.sdb.datasource.ChomboRemoteClient
 
fetch(double[], ISBoundsIterator, boolean, boolean) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
This method assumes that the underlying datasource is a MultiBlockCache.
fetchBounds - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
fetchCurrent(int) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
This method assumes that the underlying datasource is a MultiBlockCache.
fetchCurrentandNext(int) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
This method assumes that the underlying datasource is a MultiBlockCache.
fetchIterator - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
fetchNext(int) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
This method assumes that the underlying datasource is a MultiBlockCache.
fetchWorks(double[], ISBoundsIterator, boolean, boolean) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
This method assumes that the underlying datasource is a MultiBlockCache.
fieldIDMap - Variable in class edu.unh.sdb.datasource.ComponentInfo
 
FieldIDMapper - Class in edu.unh.sdb.common
This class records an array of field numbers from a component DataSource of a composite DataSource and a corresponding array of field numbers from that composite DataSource.
FieldIDMapper(int[], int[]) - Constructor for class edu.unh.sdb.common.FieldIDMapper
Constructs a FieldIDMapper with two parallel arrays.
FieldIDMapper(int) - Constructor for class edu.unh.sdb.common.FieldIDMapper
Constructs an identity FieldIDMapper of specified size.
FieldIDMapper(RecordSpec) - Constructor for class edu.unh.sdb.common.FieldIDMapper
Constructs a FieldIDMapper from a RecordSpec which specifies the attributes from a DataSource.
FieldIDMapper(int[]) - Constructor for class edu.unh.sdb.common.FieldIDMapper
Constructs a FieldIDMapper from a simple array of ints.
FieldIDMapper(FieldIDMapper, RecordSpec) - Constructor for class edu.unh.sdb.common.FieldIDMapper
Constructs a FieldIDMapper from a subset of given FieldIDMapper.
fieldLayout - Variable in class edu.unh.sdb.mdb.PDSDescriptor
 
fieldNames - Variable in class edu.unh.sdb.common.RecordDescriptorBuilder
Declares a vector to hold the field name strings
fieldNames - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Declares a vector to hold the field name strings
fieldNumbers - Variable in class edu.unh.sdb.common.RecordSpec
 
fieldTypes - Variable in class edu.unh.sdb.common.RecordDescriptorBuilder
Declares a vector to hold the field type strings
fieldTypes - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Declares a vector to hold the field type strings
FileArrayCellGroup - Class in edu.unh.sdb.lattice
This is an array implementation of the CellGroup Class.
FileArrayCellGroup(GBounds, String, RecordSpec, String, RecordSpec, RecordSpec) - Constructor for class edu.unh.sdb.lattice.FileArrayCellGroup
 
FileCellGroup - Class in edu.unh.sdb.lattice
 
FileCellGroupGrid - Class in edu.unh.sdb.lattice
 
FileCellGroupGrid(Partitioning, AxisOrdering, String) - Constructor for class edu.unh.sdb.lattice.FileCellGroupGrid
 
FileDataSource - Class in edu.unh.sdb.datasource
FileDataSource is an abstract class meant to serve as a parent class for all DataSources that read from a file.
FileError - Class in edu.unh.sdb.datasource
This error is used when a file cannot be opened, read, etc.
FileError(int, String) - Constructor for class edu.unh.sdb.datasource.FileError
Create an error with the specified error level and message.
FileException - Exception in edu.unh.sdb.datasource
This exception is raised when a file cannot be opened, read, etc.
filename - Variable in class edu.unh.sdb.datasource.DataSink
 
fileName - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
fileName - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
fileName - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
fileOffset - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Declares the file offset
fileOffset - Variable in class edu.unh.sdb.mdb.PDSDescriptor
 
fileSize - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
fileSize - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
fileSize - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
FileSplitterCellGroup - Class in edu.unh.sdb.lattice
 
FileSplitterCellGroup(GBounds, RecordDescriptor, String, RecordSpec, String, RecordSpec, RecordSpec, IndexSpaceID) - Constructor for class edu.unh.sdb.lattice.FileSplitterCellGroup
 
FileSplitterCellGroup.AList - Class in edu.unh.sdb.lattice
 
FileSplitterCellGroupGrid - Class in edu.unh.sdb.lattice
 
FileSplitterCellGroupGrid(Partitioning, AxisOrdering, String, RecordSpec, String, RecordSpec, RecordSpec) - Constructor for class edu.unh.sdb.lattice.FileSplitterCellGroupGrid
 
fill() - Method in class edu.unh.sdb.datasource.ARBlock
Fill in this ARBlock with actual data
fillBlock(boolean) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
This method fills the plane block with data read.
fim - Variable in class edu.unh.sdb.common.RecordSpec
 
findCoarser(int) - Method in class edu.unh.sdb.datasource.MRDataSource
int findCoarser( int level ) NOT YET IMPLEMENTED Try to find all next coarser data representations in file system for the next coarser level of resolution from that specified in the argument.
findCoarser(File, int) - Method in class edu.unh.sdb.datasource.MRDataSource
For a particular directory at the specified level find all the coarser representations for that directory.
findEnclosingCell(Point) - Method in class edu.unh.sdb.lattice.CellGroup
 
findEnclosingCell(IndexSpaceID, Point) - Method in class edu.unh.sdb.lattice.CellGroupGrid
 
findEnclosingCell(Point) - Method in class edu.unh.sdb.lattice.FileArrayCellGroup
 
findEnclosingCell(Point) - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
findEnclosingCell(Point) - Method in class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
findEnclosingCell(Point) - Method in class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
findEnclosingCell(Point) - Method in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
 
findEnclosingCell(IndexSpaceID, Point) - Method in class edu.unh.sdb.lattice.RectilinearTopology
 
findEnclosingCell(IndexSpaceID, Point) - Method in class edu.unh.sdb.lattice.SplitCellGroupGrid
 
findEnclosingCell(IndexSpaceID, Point) - Method in class edu.unh.sdb.lattice.Topology
 
findEnclosingCell(IndexSpaceID, Point) - Method in class edu.unh.sdb.lattice.UnstructuredTopology
 
findEnclosingCell(Point) - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroup
 
findEnclosingCell(Point) - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroupGrid
 
findMax(float[]) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
findMax(float[]) - Static method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return the index of the element with maximum magnitude
findMin(float[]) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
findSecondMax(float[], int) - Static method in class edu.unh.sdb.datasource.CacheMaker
Return the index of the element with second largest magnitude
finer() - Method in class edu.unh.sdb.datasource.MRDataSource
boolean finer( ) Move to next finer data representation.
firstChildId - Variable in class edu.unh.sdb.datasource.ARRSInternalNode
 
Float - Static variable in class edu.unh.sdb.common.StorageType
 
FloatDataArray - Class in edu.unh.sdb.common
 
FloatDataArray(int[]) - Constructor for class edu.unh.sdb.common.FloatDataArray
 
FloatDataArray(int[], AxisOrdering) - Constructor for class edu.unh.sdb.common.FloatDataArray
 
FloatDatum - Class in edu.unh.sdb.common
Represent multiple data values for a single point.
FloatDatum(int) - Constructor for class edu.unh.sdb.common.FloatDatum
Creates a null datum with the specified number of values.
FloatDatum(float) - Constructor for class edu.unh.sdb.common.FloatDatum
Deprecated. 
FloatDatum(float[]) - Constructor for class edu.unh.sdb.common.FloatDatum
Creates a datum with attributes containing the argument values.
FloatDatum(float[], int, int) - Constructor for class edu.unh.sdb.common.FloatDatum
Creates a datum by copying a subset of values from an array.
FloatDatum(int[]) - Constructor for class edu.unh.sdb.common.FloatDatum
Deprecated. 
FloatDatum(FloatDatum) - Constructor for class edu.unh.sdb.common.FloatDatum
Copy Constructor creates a copy of the argument datum.
FloatDatum(Datum) - Constructor for class edu.unh.sdb.common.FloatDatum
Copy Constructor creates a copy of the argument datum.
FloatDatum(FloatDatum[]) - Constructor for class edu.unh.sdb.common.FloatDatum
This constructor creates a single FloatDatum from an array of datums.
FloatValues - Class in edu.unh.sdb.common
FloatValues store floats in a 1 D float array
FloatValues() - Constructor for class edu.unh.sdb.common.FloatValues
construct a FloatValues with no data
FloatValues(float[]) - Constructor for class edu.unh.sdb.common.FloatValues
construct a FloatValues for a given float array
FloatValues(int) - Constructor for class edu.unh.sdb.common.FloatValues
construct a FloatValues for a given float array with the given number of floats.
floatValues() - Method in class edu.unh.sdb.common.FloatValues
Deprecated.
Use getDataReference()
floatValues() - Method in class edu.unh.sdb.common.MixedValues
Deprecated.
Use getFloats();
fmpFlags - Variable in class edu.unh.sdb.datasource.BlockManager
 
ForeignReferenceDataSource - Class in edu.unh.sdb.datasource
 
ForeignReferenceDataSource(String, String, DataSource) - Constructor for class edu.unh.sdb.datasource.ForeignReferenceDataSource
 
fullShape - Variable in class edu.unh.sdb.datasource.ISBoundsIterator
 

G

G_INCORRECT_ID_TYPE - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
GBounds - Class in edu.unh.sdb.lattice
The GBounds class is meant to represent n-d hypercubes in the data space of a lattice.
GBounds(Point, Point) - Constructor for class edu.unh.sdb.lattice.GBounds
This constructor takes two corner points (SpaceIDs) that define a hypercube of arbitrary dimensionality.
GBounds(Point) - Constructor for class edu.unh.sdb.lattice.GBounds
This constructor takes a single Point that defines the dimensions of a hypercube with lower coordinates at the origin.
GBounds(float[]) - Constructor for class edu.unh.sdb.lattice.GBounds
This constructor takes a single float array that defines the dimensions of a hypercube with lower coordinates at the origin.
GBounds(GBounds) - Constructor for class edu.unh.sdb.lattice.GBounds
Construct a copy of the argument bounds.
GBounds(int) - Constructor for class edu.unh.sdb.lattice.GBounds
This constructor just allocates space for the lower and upper arrays.
gBounds - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
GBoundsGapIterator - Class in edu.unh.sdb.lattice
 
GBoundsGapIterator(GBounds, float[], float[]) - Constructor for class edu.unh.sdb.lattice.GBoundsGapIterator
Construct an GBoundsGapIterator that will traverse the given space with an an GBounds of the given shape (dimensions).
GBoundsGapIterator(GBounds, float[], float[], AxisOrdering) - Constructor for class edu.unh.sdb.lattice.GBoundsGapIterator
 
GBoundsGapIterator(GBounds, Point, float[], float[]) - Constructor for class edu.unh.sdb.lattice.GBoundsGapIterator
 
GBoundsGapIterator(GBounds, Point, float[], float[], AxisOrdering) - Constructor for class edu.unh.sdb.lattice.GBoundsGapIterator
 
GBoundsIterator - Class in edu.unh.sdb.lattice
 
GBoundsIterator(GBounds, float[]) - Constructor for class edu.unh.sdb.lattice.GBoundsIterator
Construct an GBoundsIterator that will traverse the given space with an an GBounds of the given shape (dimensions).
GBoundsIterator(GBounds, IndexSpaceID) - Constructor for class edu.unh.sdb.lattice.GBoundsIterator
 
GBoundsIterator(GBounds, int[]) - Constructor for class edu.unh.sdb.lattice.GBoundsIterator
 
GBoundsIterator(GBounds, float[], AxisOrdering) - Constructor for class edu.unh.sdb.lattice.GBoundsIterator
 
GBoundsIterator(GBounds, Point, float[]) - Constructor for class edu.unh.sdb.lattice.GBoundsIterator
 
GBoundsIterator(GBounds, Point, float[], AxisOrdering) - Constructor for class edu.unh.sdb.lattice.GBoundsIterator
 
Geometry - Class in edu.unh.sdb.lattice
This public class is responsible for mapping a DataID to a location in the geometric space.
Geometry(GBounds, Partitioning, boolean) - Constructor for class edu.unh.sdb.lattice.Geometry
This constructor creates a new domain appropriate for the dataset described by the argument.
geometry - Variable in class edu.unh.sdb.lattice.Lattice
 
geometry - Variable in class edu.unh.sdb.lattice.UnstructuredTopology
 
geomPartitionDimensions - Variable in class edu.unh.sdb.lattice.RegularCellPartitioning
 
geomPartitionDimensions - Variable in class edu.unh.sdb.lattice.RegularPartitioning
 
get(EulerAngles.Angle) - Method in class edu.unh.sdb.common.EulerAngles
 
get(int[]) - Method in class edu.unh.sdb.common.FloatDataArray
 
get(String) - Method in class edu.unh.sdb.common.TypeTable
Return the Type corresponding to the name.
get(int) - Method in class edu.unh.sdb.common.TypeTable
Return the Type corresponding to the typeCode.
get(int) - Method in class edu.unh.sdb.datasource.DataBlockCollection
 
get(int) - Method in class edu.unh.sdb.datasource.DataSourceCollection
Returns the DataSource at the designated index or null DataSource object if no more exists.
get(String) - Method in class edu.unh.sdb.datasource.DataSourceCollection
Returns the DataSource object corresponding to the DataSource named by the string.
get(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSArrayStencil
Return true if the given id maps to an active stencil element, false otherwise.
get(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Return true if the given id maps to an active stencil element, false otherwise.
get(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSListStencil
Return true if the given id maps to an active stencil element, false otherwise.
get(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSStencil
Return true if the given id maps to an active stencil element, false otherwise.
get(int) - Method in class edu.unh.sdb.datasource.Plane
 
get(Tuple3d, int) - Static method in class edu.unh.sdb.datasource.SliceUtil
 
get(int) - Method in class edu.unh.sdb.lattice.LatticeCollection
Returns the Lattice at the designated index or null Lattice object if no more exists.
get(String) - Method in class edu.unh.sdb.lattice.LatticeCollection
Returns the Lattice object corresponding to the Lattice named by the string.
getAliasName() - Method in class edu.unh.sdb.datasource.AliasDataSource
 
getAllComponentBounds() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Returns an array containing the bounds of the Index Space for each component of the pending datasource.
getAllPublicDS() - Method in class edu.unh.sdb.datasource.XDDLReader
 
getApproximatorType() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the approximator type as an integer
getARRSTree() - Method in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
Get the ARRS tree
getARRSTree() - Method in class edu.unh.sdb.ARRSTreeBuilder.ARRSCopyModelBuilder
Get the ARRS tree -- override parent to handle index information.
getARRSTree() - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Get an ARRS tree
getARRSTree() - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Get an ARRS tree
getAttribute(int) - Method in class edu.unh.sdb.common.RecordDescriptor
Return the AttributeDescriptor at the specified position.
getAttributeNames() - Method in class edu.unh.sdb.datasource.DataCollection
return the name of each attribute
getAttributes() - Method in class edu.unh.sdb.common.RecordDescriptorBuilder
Gets the attributes for this RD
getAxis(int) - Method in class edu.unh.sdb.datasource.AxisOrdering
Return the axis number stored at the given index.
getAxisLength(int) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return the length of this iterator's space along the specified axis.
getAxisLength(int) - Method in class edu.unh.sdb.datasource.ISIterator
Return the number of elements that lie along the specified axis in the iterator's bounds.
getAxisLength(int) - Method in class edu.unh.sdb.lattice.GBoundsIterator
Return the length of this iterator's space along the specified axis.
getAxisLengthArray() - Method in class edu.unh.sdb.datasource.ISIterator
Returns an array of ints representing the dimensions of the space being iterated over.
getAxisLengthArray() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Returns an array of ints representing the dimensions of the space being iterated over.
getAxisLengths() - Method in class edu.unh.sdb.datasource.ISIterator
Returns an IndexSpaceID representing the dimensions of the space being iterated over.
getAxisOrdering() - Method in class edu.unh.sdb.datasource.DataCollection
Return a copy of the AxisOrdering .
getAxisOrdering() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns the axisOrdering
getAxisOrdering() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return the AxisOrdering object for this iterator.
getAxisOrdering() - Method in class edu.unh.sdb.datasource.ISIterator
Return the AxisOrdering for this iterator.
getAxisOrdering() - Method in class edu.unh.sdb.datasource.XFDLReader
Returns the Axis Ordering object.
getAxisOrdering() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Return the AxisOrdering object for this iterator.
getAxisWeight(int) - Method in class edu.unh.sdb.datasource.DataCollection
Return the Weight of the specified axis.
getAxisWeights() - Method in class edu.unh.sdb.datasource.DataCollection
Return the Weight of the specified axis.
getBank() - Method in class edu.unh.sdb.common.EulerAngles
 
getBaseBounds() - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Get the base bounds
getBaseBounds() - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Get the base bounds
getBaseBounds() - Method in class edu.unh.sdb.datasource.ARRSNode
get the bounds of this node
getBaseBounds() - Method in class edu.unh.sdb.datasource.DimResolution
Get the base bounds
getBaseBounds() - Method in class edu.unh.sdb.datasource.RectilinearCell
Get the base bounds of a cell
getBaseBounds() - Method in class edu.unh.sdb.datasource.URCellBlock
Get the base bounds
getBaseNormal() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getBasePosition() - Method in class edu.unh.sdb.datasource.DimResolution
Get the position in the base space
getBaseShape() - Method in class edu.unh.sdb.datasource.DimResolution
Get the size in the base space
getBaseX() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getBaseY() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getBasicBlock(int) - Method in class edu.unh.sdb.datasource.CompositeBlock
given a BasicBlock ID, return a reference to the corresponding basicBlock
getBeginPoint() - Method in class edu.unh.sdb.datasource.RayIterator
Returns the begin, current and end point or block coordinates.
getBeginX() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getBeginY() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getBlock(IndexSpaceID) - Method in class edu.unh.sdb.datasource.SparseDataSource
Return the block index (id) for the partition that contains the "loc" IndexSpaceID.
getBlockBoundsIterator() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
getBlockDimensions() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
getBlockDimensions() - Method in class edu.unh.sdb.datasource.FDLDescriptor
 
getBlockManager() - Method in class edu.unh.sdb.datasource.BlockedDataSource
Return the BlockManager, from which you can get information for each Component.
getBlockShape() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return an IndexSpaceID representing the shape of the iterator's blocks.
getBlockShape() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Return an IndexSpaceID representing the shape of the iterator's blocks.
getBounds() - Method in class edu.unh.sdb.datasource.BlockManager
Return the Bounds of this BlockManager
getBounds() - Method in class edu.unh.sdb.datasource.DataCollection
Return a reference to the ISBounds for this DataBlock.
getBounds() - Method in class edu.unh.sdb.datasource.DataSink
 
getBounds() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns the bounds of the Index Space for this FDLDescriptor.
getBounds() - Method in interface edu.unh.sdb.datasource.Indexable
 
getBounds() - Method in class edu.unh.sdb.datasource.ISIterator
Return the ISBounds over which this ISIterator is iterating.
getBounds() - Method in class edu.unh.sdb.datasource.OneDDataSink
For OneDDataSinks, this method returns a bounds constructed from the current position of the file pointer.
getBounds() - Method in class edu.unh.sdb.datasource.Slice
 
getBounds() - Method in class edu.unh.sdb.datasource.XDDLReader
Returns the bounds of the Index Space for this FDLDescriptor.
getBounds() - Method in class edu.unh.sdb.lattice.Geometry
returns the geometry bounds
getBounds() - Method in class edu.unh.sdb.lattice.RectilinearTopology
Return a bounds for the Topology.
getBounds() - Method in class edu.unh.sdb.lattice.Topology
Return a bounds for the Topology.
getBounds() - Method in class edu.unh.sdb.lattice.UnstructuredTopology
Returns the bounds of the 1D pointlist.
getBoxBounds(int, int) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getBuffer() - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getBuffer(int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Return a reference to the specified byte buffer
getBuffer() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Return a reference to byte buffer 0, if there is only one.
getBufferSize() - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
GetBufferSize() - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
 
getBufferSize() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
get the current length, in bytes, of the buffer used directly with file I/O operations.
getBufferSize(int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
get the current length, in bytes, of the buffer used directly with file I/O operations.
getBuilder() - Method in class edu.unh.sdb.datasource.XTDLReader
returns the DataSourceBuilder to a new builder
getByte(int) - Method in class edu.unh.sdb.common.ByteDatum
Return the field specified by the argument as a byte.
getByte(int) - Method in class edu.unh.sdb.common.ByteValues
return the byte value at of the item at the given index of the byte array
getByte(int) - Method in class edu.unh.sdb.common.Datum
Return the field specified by the argument as a byte.
getByte(int) - Method in class edu.unh.sdb.common.DoubleDatum
Return the field specified by the argument as a byte.
getByte(int) - Method in class edu.unh.sdb.common.DoubleValues
return the byte value of the double at the given index of the double array
getByte(int) - Method in class edu.unh.sdb.common.FloatDatum
Return the field specified by the argument as a byte.
getByte(int) - Method in class edu.unh.sdb.common.FloatValues
return the byte value of the float at the given index of the float array
getByte(int) - Method in class edu.unh.sdb.common.IntDatum
Return the field specified by the argument as a byte.
getByte(int) - Method in class edu.unh.sdb.common.IntValues
return the short value of the int at the given index of the float array
getByte(int) - Method in class edu.unh.sdb.common.MixedDatum
Return the field specified by the argument as a byte.
getByte(int) - Method in class edu.unh.sdb.common.MixedValues
return the byte value of the item at the given index of the byte array
getByte(int) - Method in class edu.unh.sdb.common.ShortDatum
Return the field specified by the argument as a byte.
getByte(int) - Method in class edu.unh.sdb.common.ShortValues
return the byte value of the short at the given index of the float array
getByte(int) - Method in class edu.unh.sdb.common.Values
 
getByte(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.BasicBlock
get the field value at the ISID position as a short.
getByte(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the field value at the ISID position as a byte.
getByte(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.DataCollection
Return the field specified by the arguments as a byte.
getByteAttribute(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the byte attribute for a given IndexSpaceID and attributeID
getByteOrder() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns a ByteOrder indicating whether the file byte order is bigendian.
getByteOrder() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Return the byteOrder of this binary file
getByteOrder(String) - Method in class edu.unh.sdb.datasource.XDDLReader
Returns the endianness of the datasource specified by dsName
getByteOrder() - Method in class edu.unh.sdb.datasource.XFDLReader
 
getBytes() - Method in class edu.unh.sdb.common.ByteDatum
Return all attributes of the Datum as a 1-d byte array
getBytes() - Method in class edu.unh.sdb.common.ByteValues
return a reference to the byte array this object is representing
getBytes(byte[]) - Method in class edu.unh.sdb.common.ByteValues
fill the passed array with this data
getBytes(int, int, int) - Method in class edu.unh.sdb.common.ByteValues
Return byte array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getBytes() - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum as a 1-d byte array
getBytes(byte[]) - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum in the passed array.
getBytes(byte[], int) - Method in class edu.unh.sdb.common.Datum
Returns all the attributes of the Datum in the passed array, storing them starting at 'index'.
getBytes() - Method in class edu.unh.sdb.common.DoubleValues
Return a byte array representing all elements in the Values object
getBytes(byte[]) - Method in class edu.unh.sdb.common.DoubleValues
fill the passed array with this data
getBytes() - Method in class edu.unh.sdb.common.FloatValues
Return a byte array representing all elements in the Values object
getBytes(byte[]) - Method in class edu.unh.sdb.common.FloatValues
fill the passed array with this data
getBytes() - Method in class edu.unh.sdb.common.IntValues
Return a byte array representing all elements in the Values object
getBytes(byte[]) - Method in class edu.unh.sdb.common.IntValues
fill the passed array with this data
getBytes() - Method in class edu.unh.sdb.common.MixedValues
Return a byte array representing all elements in the Values object
getBytes(byte[]) - Method in class edu.unh.sdb.common.MixedValues
fill the passed array with this data
getBytes() - Method in class edu.unh.sdb.common.ShortValues
Return a byte array representing all elements in the Values object
getBytes(byte[]) - Method in class edu.unh.sdb.common.ShortValues
fill the passed array with this data
getBytes() - Method in class edu.unh.sdb.common.Values
Return a byte array representing all elements in the Values object
getBytes(byte[]) - Method in class edu.unh.sdb.common.Values
Fill byte array representing all elements in the Values object If the passed array is not the right size, a a correct size array is allocated and returned.
getBytes(int, int) - Method in class edu.unh.sdb.common.Values
Return byte array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until we get to the end of the array.
getBytes(int, int, byte[]) - Method in class edu.unh.sdb.common.Values
Reference version of getBytes( start, stride ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getBytes(int, int, int) - Method in class edu.unh.sdb.common.Values
Return byte array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getBytes(int, int, int, byte[]) - Method in class edu.unh.sdb.common.Values
Reference version of getBytes( start, stride, num ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getBytes(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataCollection
Return all attributes of the Datum as a single byte array
getBytes(IndexSpaceID, byte[]) - Method in class edu.unh.sdb.datasource.DataCollection
Reference version of getBytes( isid ) The passed array is returned for convenience, but if it is null or not the right length a new array is created and returned.
getBytes(int) - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d byte array containing all values of the specified attribute using the existing axis axisOrdering.
getBytes(int, byte[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill the passed 1-d byte array with all values of the specified attribute using the existing axis axisOrdering.
getBytes() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d byte array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getBytes(byte[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getBytesByAttribute() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d byte array containing all values of all attributes in attribute order using the existing axis axisOrdering.
getBytesByAttribute(byte[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getBytesByPoint() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d byte array containing all values of all attributes in point order using the existing axis axisOrdering.
getBytesByPoint(byte[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and attribute data axisOrdering.
getBytesPerTexel() - Method in class edu.unh.sdb.datasource.Slice
 
getCacheArrayDimensions() - Method in class edu.unh.sdb.datasource.MultiBlockCacheDataSource
 
getCacheBlockBounds() - Method in class edu.unh.sdb.datasource.BlockCacheDataSource
Return an ISBounds representing the dimensions of the CacheDataBlocks used in in this BlockCacheDataSource.
getCacheBlockBounds(IndexSpaceID) - Method in class edu.unh.sdb.datasource.BlockCacheDataSource
Returns a new ISBounds representing the bounds of the cacheBlock that contains the given id.
getCacheBlockBounds(IndexSpaceID, ISBounds) - Method in class edu.unh.sdb.datasource.BlockCacheDataSource
Sets the ISBounds argument to the bounds of the cacheBlock that contains the given id.
getCacheBlockBoundsIterator() - Method in class edu.unh.sdb.datasource.BlockCacheDataSource
Returns an ISBoundsIterator that produces bounds corresponding to the cache blocks.
getCacheBlockBoundsIterator(ISBoundsIterator) - Method in class edu.unh.sdb.datasource.BlockCacheDataSource
Sets the ISBoundsIterator argument so it produces bounds corresponding to the cache blocks.
getCacheBlockDimensions() - Method in class edu.unh.sdb.datasource.BlockCacheDataSource
Return an IndexSpaceID representing the dimensions of the CacheDataBlocks used in in this BlockCacheDataSource.
getCacheBlockReference() - Method in class edu.unh.sdb.datasource.UniBlockCacheDataSource
Return the cache reference for possible need to assignment operation.
getCacheMemoryUsage() - Method in class edu.unh.sdb.datasource.BlockCacheDataSource
Return the number of bytes consumed by the cache when allocated.
getCell() - Method in class edu.unh.sdb.datasource.ARRSCellIterator
Get a cell
getCell() - Method in class edu.unh.sdb.datasource.CellIterator
Get a cell
getCell(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Get a cell in the cell data source
getCell(IntegerIndexSpaceID) - Method in class edu.unh.sdb.datasource.URCellBlock
Return a cell corresponding to the specified position
getCell() - Method in class edu.unh.sdb.datasource.URCellIterator
Get a ARRS cell
getCellBlockBounds() - Method in class edu.unh.sdb.datasource.DimResolution
Get the cell bounds
getCellBlockShape() - Method in class edu.unh.sdb.datasource.DimResolution
Get the size in the cell space
getCellData(Indexable, Indexable) - Method in class edu.unh.sdb.datasource.IndexBlock
Get the data corresponding to the index block
getCellData(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Get the point block of a cell
getCellGroupGrid() - Method in class edu.unh.sdb.lattice.UnstructuredTopology
This is public for debugging purposes only.
getCellID() - Method in class edu.unh.sdb.datasource.Cell
Get the cell id of a cell
getCellID() - Method in class edu.unh.sdb.lattice.TriangleCellIterator
 
getCellIndexable() - Method in class edu.unh.sdb.datasource.ARRSNode
Get the ARR cell source
getCenterPoint() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return the current center point of the plane in space.
getCenterPoint(float[]) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return the current center point of the plane in space.
getChild(ArrayList, int) - Method in class edu.unh.sdb.datasource.ARRSInternalNode
Get the specified child
getChild(ARRSNode, int) - Method in class edu.unh.sdb.datasource.ARRSTree
Get one child of the specified node
getChildID(ArrayList, int) - Method in class edu.unh.sdb.datasource.ARRSInternalNode
Get the id of the specified child
getChildren(ArrayList<ARRSNode>) - Method in class edu.unh.sdb.datasource.ARRSInternalNode
Get all the children
getChildren(ARRSNode) - Method in class edu.unh.sdb.datasource.ARRSTree
Get all the children of the specified node
getChomboDesiredAttribute() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Return the attribute being read from the Chombo file.
getChunkBounds() - Method in class edu.unh.sdb.datasource.ChunkedDataSource
Return an ISBounds indicating the dimensions of a chunk.
getChunkByteSize() - Method in class edu.unh.sdb.datasource.ChunkedDataSource
get the byte size of each chunk
getChunkDimensions() - Method in class edu.unh.sdb.datasource.ChunkedDataSource
get the dimensions of each chunk in grid space
getChunkDimensions() - Method in class edu.unh.sdb.datasource.FDLDescriptor
 
getComponent() - Method in class edu.unh.sdb.datasource.ComponentInfo
 
getComponentBounds() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Returns the array of component ISBoundses corresponding to the array this.componentInfos[].
getComponentDataSources() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Returns the array of component DataSources that are corresponding to the array this.componentInfos[].
getComponentDataSources() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Returns an array containing the component datasources.
getComponentFieldIDs() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Returns the array of componentFieldNumbers for each ComponentInfo's FieldIDMapper.
getComponentFieldPosition(String) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Examines the current component datasource and returns the position of the field named by "name".
getComponentFields() - Method in class edu.unh.sdb.common.FieldIDMapper
Returns the field numbers of the component DataSource.
getComponentInfo() - Method in class edu.unh.sdb.datasource.BlockManager
Return the ComponentInfo array.
getComponentInfo(int) - Method in class edu.unh.sdb.datasource.BlockManager
Return the ComponentInfo specified by the index.
getComponentInfos() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Returns the reference to the array this.componentInfos[].
getComponentSubset() - Method in class edu.unh.sdb.datasource.ISIDMapper
Return a copy of the Component Subset bounds
getCompositeBounds() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Returns the array of destination ISBoundses corresponding to the array this.componentInfos[].
getCompositeBounds() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Returns the bounds of the Index Space for the pending datasource.
getCompositeExtent() - Method in class edu.unh.sdb.datasource.ISIDMapper
Return a copy of the Composite Extent bounds
getCompositeFieldIDs() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Returns the array of compositeFieldNumbers for each ComponentInfo's FieldIDMapper.
getCompositeFields() - Method in class edu.unh.sdb.common.FieldIDMapper
Returns the field numbers of the composite DataSource.
getConfigPath() - Method in class edu.unh.sdb.common.Configuration
 
getContainingPartitionBoundary(IndexSpaceID, int, boolean) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
If upper is true, return the upper value of the specified axis of the partition containing the id, otherwise, return the lower value.
getContainingPartitionBounds(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Return the bounds of the partition that contains the given id.
getContainingPartitionBounds(IndexSpaceID, ISBounds) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Sets the ISBounds argument to the bounds of the partition in the data space that contains the given id, specified in the data space.
getCoord(int) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Get the value corresponding to the specified axis.
getCoord(int) - Method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
Get the value corresponding to the specified axis.
getCoord(int) - Method in class edu.unh.sdb.datasource.ISIterator
Get the value corresponding to the specified axis.
getCoord(int) - Method in class edu.unh.sdb.datasource.PackedIndexSpaceID
Get the value corresponding to the specified axis.
getCoord(int) - Method in class edu.unh.sdb.lattice.GIterator
Get the value corresponding to the specified axis.
getCoord(int) - Method in class edu.unh.sdb.lattice.Point
Get the value corresponding to the specified axis.
getCoordinateFDLFileName() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the coordianteFDLFileName
getCoordinateFileName(int) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the coordinateName
getCoordinateRecordSpec() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the coordinateRecordSpec for SplitUnstructuredTopology
getCoords(int[]) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Fill the array argument with the coordinate values for this ISID.
getCoords() - Method in class edu.unh.sdb.datasource.IndexSpaceID
Return an array with the coordinate values for this ISID.
getCoords(int[]) - Method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
Fill the array argument with the coordinate values for this ISID.
getCoords(int[]) - Method in class edu.unh.sdb.datasource.ISIterator
Fill the array argument with the coordinate values for this ISID.
getCoords(int[]) - Method in class edu.unh.sdb.datasource.PackedIndexSpaceID
Fill the array argument with the coordinate values for this ISID.
getCoords(float[]) - Method in class edu.unh.sdb.lattice.Point
Copy the coordinates into the argument array.
getCornerDatums(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Get the datums of the corners in a cell
getCorners(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Get the corners of a cell
getCornersDeterminingBb() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getCurrentDataSource() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Returns the DataSource object mapped to the most recent compoent
getCurrentElement() - Method in class edu.unh.sdb.datasource.RayIterator
 
getCurrentElementIndex() - Method in class edu.unh.sdb.datasource.RayIterator
 
getCurrentFDLDescriptor() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Returns the current File Descriptor Language object
getCurrentLatticeBuilder() - Method in class edu.unh.sdb.lattice.XLDLReader
Returns the current LatticeBuilder
getCurrentPoint() - Method in class edu.unh.sdb.datasource.RayIterator
 
getCurrentRay() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getCurrentWorkSpace() - Static method in class edu.unh.sdb.common.WorkSpaceManager
Return the current WorkSpace, or null if no current WorkSpace has been set.
getCurrentX() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getCurrentY() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getData() - Method in class edu.unh.sdb.datasource.Cell
Get the data contained in a cell
getData(int, ISBounds) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getData(byte[], ChomboDataSource) - Method in class edu.unh.sdb.datasource.DSArrayStencil
Fill the given byte array with the data contained in the ChomboDataSource given to the method.
getData(byte[], DataSource) - Method in class edu.unh.sdb.datasource.DSArrayStencil
Fill the given byte array with the data contained in the active elements of this stencil.
getData(byte[]) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Fill the given byte array with the data contained in the active elements of this stencil.
getData() - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
getData() - Method in class edu.unh.sdb.lattice.Cell
 
getDataBlock() - Method in class edu.unh.sdb.datasource.DataBlockProxy
DataBlock getDataBlock()
getDataBlock() - Method in class edu.unh.sdb.datasource.DCBoundsIterator
Get a data block containing the data associated with the current iteration bounds.
getDataBlock(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Return true if the given id maps to an active stencil element, false otherwise.
getDataBlock() - Method in class edu.unh.sdb.datasource.URCellBlockIterator
get a cell block
getDataBlock() - Method in class edu.unh.sdb.datasource.URCellIterator
Get a uniform cell block
getDataBytesUsed() - Method in class edu.unh.sdb.datasource.DSArrayStencil
Return the number of bytes actually used in the last call to getData().
getDataBytesUsed() - Method in class edu.unh.sdb.datasource.DSBlockStencil
Return the number of bytes actually used in the last call to getData().
getDataCollection() - Method in class edu.unh.sdb.datasource.DCBoundsIterator
Get the DataCollection associated with this Iterator
getDataCollection(DataCollection) - Method in class edu.unh.sdb.datasource.DCBoundsIterator
Set the DataCollection associated with this Iterator
getDataCollection() - Method in class edu.unh.sdb.datasource.DCIterator
Get the DataCollection associated with this Iterator
getDataCollection(DataCollection) - Method in class edu.unh.sdb.datasource.DCIterator
Set the DataCollection associated with this Iterator
getDataComponents() - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getDataFile(File) - Method in class edu.unh.sdb.datasource.MRDataSource
Find data file
getDataFile() - Method in class edu.unh.sdb.datasource.MRDataSource
getDataFile()
getDataFile(int) - Method in class edu.unh.sdb.datasource.MRDataSource
getDataFile( int level )
getDataFile(int, int) - Method in class edu.unh.sdb.datasource.MRDataSource
getDataFile( int level, int which )
getDataFileName(int) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the dataName
getDataFileString() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns the file specification string for this FDLDescriptor as a String.
getDataFileString() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Return a copy of the URL for this datasource.
getDataFileType() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns the DataFile Type as a string
getDataFileURL() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns the file URL for this FDLDescriptor as a String.
getDataOrder() - Method in class edu.unh.sdb.datasource.DataCollection
Returns the data storage order.
getDataRecordSpec() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the dataRecordSpec for SplitUnstructuredTopology
getDataReference() - Method in class edu.unh.sdb.common.ByteValues
Return a reference to the data array this object contains.
getDataReference() - Method in class edu.unh.sdb.common.DoubleValues
Return a reference to the data array this object contains.
getDataReference() - Method in class edu.unh.sdb.common.FloatValues
Return a reference to the data array this object contains.
getDataReference() - Method in class edu.unh.sdb.common.IntValues
Return a reference to the data array this object contains.
getDataReference() - Method in class edu.unh.sdb.common.MixedValues
Return a reference to the data array this object contains.
getDataReference() - Method in class edu.unh.sdb.common.ShortValues
Return a reference to the data array this object contains.
GetDataSize() - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
 
getDataSource(String) - Method in class edu.unh.sdb.datasource.DataSourceCollection
Returns the DataSource object corresponding to the DataSource named by the string
getDataSource() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
getDataSource() - Method in class edu.unh.sdb.datasource.MRDataSource
getDataSource() -- return current data source
getDataSource(int) - Method in class edu.unh.sdb.datasource.MRDataSource
getDataSource( int level )
getDataSource(int, int) - Method in class edu.unh.sdb.datasource.MRDataSource
getDataSource( int level, int which )
getDataSource() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return the datasource being iterated over.
getDataSource() - Method in interface edu.unh.sdb.datasource.ObliquePlaneIteratorInterface
 
getDataSource() - Method in class edu.unh.sdb.datasource.Slice
 
getDataSource() - Method in class edu.unh.sdb.datasource.VRDataBlock
 
getDataSource() - Method in class edu.unh.sdb.datasource.VRDataSource
 
getDataSourceBuilder() - Method in class edu.unh.sdb.datasource.XDDLReader
returns the DataSourceBuilder to a new builder *
getDataSources() - Method in class edu.unh.sdb.datasource.XDDLReader
Returns the list of Datasources
getDataSources() - Method in class edu.unh.sdb.lattice.XLDLReader
Returns the list of Datasources
getDatums(Indexable) - Method in class edu.unh.sdb.datasource.IndexBlock
Return Datums corresponding to the index block
getDatums(Indexable, Datum[]) - Method in class edu.unh.sdb.datasource.IndexBlock
Get Datums corresponding to the index block
getDBConnection() - Method in class edu.unh.sdb.common.WorkSpace
Returns the DataBase Connection.
getDBName() - Method in class edu.unh.sdb.datasource.AliasDataSource
 
getDBName() - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
 
getDestinations() - Method in class edu.unh.sdb.common.FieldIDMapper
Returns the field numbers of the composite DataSource.
getDim() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns the the dimensionality for this FDLDescriptor as an int
getDimension(int) - Method in class edu.unh.sdb.datasource.ISBounds
Return the length of the axis specified as an argument.
getDimension(int) - Method in class edu.unh.sdb.lattice.GBounds
Return the extent of this GBounds along the specified axis.
getDimensionality() - Method in class edu.unh.sdb.datasource.Cell
Deprecated.
use dim()
getDimensionality() - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getDimensionality() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the topology dimensionality as an integer
getDimensions() - Method in class edu.unh.sdb.datasource.ISBounds
Return an IndexSpaceID with axis values denoting the size of each corresponding dimension of the ISBounds.
getDimensions(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Fill the argument array with coordinate values denoting the size of each corresponding dimension of the ISBounds.
getDimensions() - Method in class edu.unh.sdb.lattice.ArrayCell
return an array that represents the sizes of each dimension of the cell.
getDimensions() - Method in class edu.unh.sdb.lattice.GBounds
Return a Point with axis values denoting the size of each corresponding dimension of the GBounds.
getDimensions(float[]) - Method in class edu.unh.sdb.lattice.GBounds
Fill the argument array with coordinate values denoting the size of each corresponding dimension of the GBounds.
getDimensionsArray() - Method in class edu.unh.sdb.datasource.DataCollection
Return a reference to an array containing the dimensions of this data collection.
getDimensionsArray() - Method in class edu.unh.sdb.datasource.ISBounds
Return an int array with axis values denoting the size of each corresponding dimension of the ISBounds.
getDimResolution() - Method in class edu.unh.sdb.datasource.RegCellDataSource
Get the dimensional resolution
getDimResolution() - Method in class edu.unh.sdb.datasource.URCellBlock
Get the dimensional resolution
getDouble(int) - Method in class edu.unh.sdb.common.ByteDatum
Return the field specified by the argument as a double.
getDouble(int) - Method in class edu.unh.sdb.common.ByteValues
return the double value represent the byte value of the given index
getDouble(int) - Method in class edu.unh.sdb.common.Datum
Return the field specified by the argument as a double.
getDouble(int) - Method in class edu.unh.sdb.common.DoubleDatum
Return the field specified by the argument as a double.
getDouble(int) - Method in class edu.unh.sdb.common.DoubleValues
return the double value at the given index of the double array
getDouble(int) - Method in class edu.unh.sdb.common.FloatDatum
Return the field specified by the argument as a double.
getDouble(int) - Method in class edu.unh.sdb.common.FloatValues
return the double value of the float at the given index of the float array
getDouble(int) - Method in class edu.unh.sdb.common.IntDatum
Return the field specified by the argument as a double.
getDouble(int) - Method in class edu.unh.sdb.common.IntValues
return the double value of the int at the given index of the int array
getDouble(int) - Method in class edu.unh.sdb.common.MixedDatum
Return the field specified by the argument as a double.
getDouble(int) - Method in class edu.unh.sdb.common.MixedValues
return the double value represented by 8 adjacent bytes, starting with the byte of the given index
getDouble(int) - Method in class edu.unh.sdb.common.ShortDatum
Return the field specified by the argument as a double.
getDouble(int) - Method in class edu.unh.sdb.common.ShortValues
return the double value of the short at the given index of the short array
getDouble(int) - Method in class edu.unh.sdb.common.Values
 
getDouble(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.BasicBlock
get the field value at the ISID position as an int.
getDouble(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the field value at the ISID position as a double.
getDouble(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.DataCollection
Return the field specified by the arguments as a double.
getDouble(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
getDoubleAttribute(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the double attribute for a given IndexSpaceID and attributeID
getDoubleAttributes(double[], RecordSpec, boolean) - Method in class edu.unh.sdb.datasource.CompositeBlock
User passes in a pre-allocated double array, attributes specified by recordSpec are copied from this compositeBlock to the dstArray.
getDoubles() - Method in class edu.unh.sdb.common.ByteValues
Return double array representing all elements in the Values object
getDoubles(double[]) - Method in class edu.unh.sdb.common.ByteValues
fill the passed array with this data
getDoubles() - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum as a 1-d double array
getDoubles(double[]) - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum in the passed array.
getDoubles() - Method in class edu.unh.sdb.common.DoubleDatum
Return all attributes of the Datum as a 1-d double array
getDoubles() - Method in class edu.unh.sdb.common.DoubleValues
return a reference to the double array this object is representing
getDoubles(double[]) - Method in class edu.unh.sdb.common.DoubleValues
fill the passed array with this data
getDoubles(int, int, int) - Method in class edu.unh.sdb.common.DoubleValues
Return double array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getDoubles() - Method in class edu.unh.sdb.common.FloatValues
Return double array representing all elements in the Values object
getDoubles(double[]) - Method in class edu.unh.sdb.common.FloatValues
fill the passed array with this data
getDoubles() - Method in class edu.unh.sdb.common.IntValues
Return double array representing all elements in the Values object
getDoubles(double[]) - Method in class edu.unh.sdb.common.IntValues
fill the passed array with this data
getDoubles() - Method in class edu.unh.sdb.common.MixedValues
Return double array representing all elements in the Values object
getDoubles(double[]) - Method in class edu.unh.sdb.common.MixedValues
fill the passed array with this data
getDoubles() - Method in class edu.unh.sdb.common.ShortValues
Return double array representing all elements in the Values object
getDoubles(double[]) - Method in class edu.unh.sdb.common.ShortValues
fill the passed array with this data
getDoubles() - Method in class edu.unh.sdb.common.Values
Return double array representing all elements in the Values object
getDoubles(double[]) - Method in class edu.unh.sdb.common.Values
Fill double array representing all elements in the Values object If the passed array is not the right size, a a correct size array is allocated and returned.
getDoubles(int, int) - Method in class edu.unh.sdb.common.Values
Return double array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until we get to the end of the array.
getDoubles(int, int, double[]) - Method in class edu.unh.sdb.common.Values
Reference version of getDoubles( start, stride ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getDoubles(int, int, int) - Method in class edu.unh.sdb.common.Values
Return double array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getDoubles(int, int, int, double[]) - Method in class edu.unh.sdb.common.Values
Reference version of getDoubles( start, stride, num ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getDoubles(double[], RecordSpec, boolean) - Method in class edu.unh.sdb.datasource.BasicBlock
User passes in a pre-allocated double array, attributes specified by recordSpec are copied from the BasicBlock to the dstArray.
getDoubles(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataCollection
Return all attributes of the Datum at the as a 1-d double array
getDoubles(IndexSpaceID, double[]) - Method in class edu.unh.sdb.datasource.DataCollection
Reference version of getDoubles( isid ) The passed array is returned for convenience, but if it is null or not the right length a new array is created and returned.
getDoubles(int) - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d double array containing all values of the specified attribute using the existing axis axisOrdering.
getDoubles(int, double[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill the passed 1-d double array with all values of the specified attribute using the existing axis axisOrdering.
getDoubles() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d double array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getDoubles(double[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getDoublesByAttribute() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d double array containing all values of all attributes in attribute order using the existing axis axisOrdering.
getDoublesByAttribute(double[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getDoublesByPoint() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d double array containing all values of all attributes in point order using the existing axis axisOrdering.
getDoublesByPoint(double[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and attribute data axisOrdering.
getDSCollection() - Method in class edu.unh.sdb.common.WorkSpace
Returns the DataSourceCollection.
getDSName() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Returns the datasource name
getDSName() - Method in class edu.unh.sdb.datasource.XDDLReader
Returns the datasource name
getDSName() - Method in class edu.unh.sdb.lattice.XLDLReader
Returns the datasource name
getDTDPath() - Method in class edu.unh.sdb.common.Configuration
 
getElementAt(int) - Method in class edu.unh.sdb.datasource.DataSourceCollection
Returns the DataSource at the designated index or null DataSource object if no more exists.
getElementAt(int) - Method in class edu.unh.sdb.lattice.LatticeCollection
Returns the Lattice at the designated index or null Lattice object if no more exists.
getEndPoint() - Method in class edu.unh.sdb.datasource.RayIterator
 
getEndX() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getEndY() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getEnumerWindow(int) - Method in class edu.unh.sdb.datasource.RayCellIterator
get an array of ISBounds within the iteration enumeration window Enumeration window is the number of iteration steps that can be predicted in advance it's possible that two element in the array have the same ISBounds
getEnumWindow() - Method in class edu.unh.sdb.datasource.BlockListCache
return the enum window
getEnumWindow() - Method in class edu.unh.sdb.datasource.RandomBlockIterator
 
getEnumWindowIndex() - Method in class edu.unh.sdb.datasource.RandomBlockIterator
 
getErrorReportingLevel() - Static method in class edu.unh.sdb.common.SDBError
 
getException() - Method in class edu.unh.sdb.common.RangedTypeBuilder
Returns the exception value as a double
getFDLDescriptor() - Method in class edu.unh.sdb.datasource.DataSource
returns the FDLDescriptor associated with this DataSource.
getFDLDescriptor() - Method in class edu.unh.sdb.datasource.XDDLReader
returns an FDLDescriptor object containing all of the files attributes
getFDLDescriptor() - Method in class edu.unh.sdb.datasource.XFDLReader
returns an FDLDescriptor object containing all of the files attributes
getFIDMappers() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Returns the array of FieldIDMappers that are corresponding to the array this.componentInfos[].
getFieldIDMap() - Method in class edu.unh.sdb.datasource.ComponentInfo
 
getFieldIDMapper() - Method in class edu.unh.sdb.common.RecordSpec
Returns the FieldIDMapper equivalent to this RecordSpec
getFieldLayout() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns a boolean if Point Order has been selected
getFieldLayout() - Method in class edu.unh.sdb.datasource.XFDLReader
 
getFieldNames() - Method in class edu.unh.sdb.common.RecordDescriptor
Return an array of the field names.
getFieldNumber(int) - Method in class edu.unh.sdb.common.RecordSpec
Returns the FieldSpec at the index position.
getFieldNumbers() - Method in class edu.unh.sdb.common.RecordSpec
get the field number array
getFieldPos(int, int) - Method in class edu.unh.sdb.datasource.BasicBlock
 
getFieldTypes() - Method in class edu.unh.sdb.common.RecordDescriptor
Return an array of the field types in string form.
getFilename() - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getFileOffset() - Method in class edu.unh.sdb.datasource.BinaryFileDataSource
get the file initial offset
getFileOffset() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns the file offset
getFileOffset() - Method in class edu.unh.sdb.datasource.XFDLReader
 
getFirstChildID() - Method in class edu.unh.sdb.datasource.ARRSInternalNode
Get the first child's id
getFirstComponentDataSource() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Returns the first DataSource in the component list or a null if no components have been specified.
getFloat(int) - Method in class edu.unh.sdb.common.ByteDatum
Return the field specified by the argument as a float.
getFloat(int) - Method in class edu.unh.sdb.common.ByteValues
return the float value representing the byte value of the given index
getFloat(int) - Method in class edu.unh.sdb.common.Datum
Return the field specified by the argument as a float.
getFloat(int) - Method in class edu.unh.sdb.common.DoubleDatum
Return the field specified by the argument as a double.
getFloat(int) - Method in class edu.unh.sdb.common.DoubleValues
return the float value of the double at the given index of the array
getFloat(int) - Method in class edu.unh.sdb.common.FloatDatum
Return the field specified by the argument as a float.
getFloat(int) - Method in class edu.unh.sdb.common.FloatValues
return the float value at the given index of the array
getFloat(int) - Method in class edu.unh.sdb.common.IntDatum
Return the field specified by the argument as a float.
getFloat(int) - Method in class edu.unh.sdb.common.IntValues
return the float value of the int at the given index of the array
getFloat(int) - Method in class edu.unh.sdb.common.MixedDatum
Return the field specified by the argument as a float.
getFloat(int) - Method in class edu.unh.sdb.common.MixedValues
return the float value represented by 4 adjacent bytes, starting with the byte of the given index
getFloat(int) - Method in class edu.unh.sdb.common.ShortDatum
Return the field specified by the argument as a float.
getFloat(int) - Method in class edu.unh.sdb.common.ShortValues
return the float value of the short at the given index of the short array
getFloat(int) - Method in class edu.unh.sdb.common.Values
 
getFloat(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.BasicBlock
get the float attribute for a given IndexSpaceID and attributeID, convert if needed
getFloat(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the field value at the ISID position as a float.
getFloat(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.DataCollection
Return the field specified by the arguments as a float.
getFloatAttribute(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the float attribute for a given IndexSpaceID and attributeID
getFloatAttributes(float[], RecordSpec, boolean) - Method in class edu.unh.sdb.datasource.CompositeBlock
User passes in a pre-allocated float array, attributes specified by recordSpec are copied from this CompositeBlock to the dstArray.
getFloatAxis(int) - Method in class edu.unh.sdb.lattice.Point
Get the value corresponding to the specified axis.
getFloats() - Method in class edu.unh.sdb.common.ByteValues
Return float array representing all elements in the Values object
getFloats(float[]) - Method in class edu.unh.sdb.common.ByteValues
fill the passed array with this data
getFloats() - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum as a 1-d float array
getFloats(float[]) - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum in the passed array.
getFloats() - Method in class edu.unh.sdb.common.DoubleValues
Return float array representing all elements in the Values object
getFloats(float[]) - Method in class edu.unh.sdb.common.DoubleValues
fill the passed array with this data
getFloats() - Method in class edu.unh.sdb.common.FloatDatum
Return all attributes of the Datum as a 1-d double array
getFloats() - Method in class edu.unh.sdb.common.FloatValues
return a reference to the float array this object is representing
getFloats(float[]) - Method in class edu.unh.sdb.common.FloatValues
fill the passed array with this data
getFloats(int, int, int) - Method in class edu.unh.sdb.common.FloatValues
Return float array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getFloats() - Method in class edu.unh.sdb.common.IntValues
Return float array representing all elements in the Values object
getFloats(float[]) - Method in class edu.unh.sdb.common.IntValues
fill the passed array with this data
getFloats() - Method in class edu.unh.sdb.common.MixedValues
Return float array representing all elements in the Values object
getFloats(float[]) - Method in class edu.unh.sdb.common.MixedValues
fill the passed array with this data
getFloats() - Method in class edu.unh.sdb.common.ShortValues
Return float array representing all elements in the Values object
getFloats(float[]) - Method in class edu.unh.sdb.common.ShortValues
fill the passed array with this data
getFloats() - Method in class edu.unh.sdb.common.Values
Return float array representing all elements in the Values object
getFloats(float[]) - Method in class edu.unh.sdb.common.Values
Fill float array representing all elements in the Values object If the passed array is not the right size, a a correct size array is allocated and returned.
getFloats(int, int) - Method in class edu.unh.sdb.common.Values
Return float array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until we get to the end of the array.
getFloats(int, int, float[]) - Method in class edu.unh.sdb.common.Values
Reference version of getFloats( start, stride ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getFloats(int, int, int) - Method in class edu.unh.sdb.common.Values
Return floats array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getFloats(int, int, int, float[]) - Method in class edu.unh.sdb.common.Values
Reference version of getFloats( start, stride, num ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getFloats(float[], RecordSpec, boolean) - Method in class edu.unh.sdb.datasource.BasicBlock
User passes in a pre-allocated float array, attributes specified by recordSpec are copied from the BasicBlock to the dstArray.
getFloats(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataCollection
Return all attributes of the Datum as a 1-d float array
getFloats(IndexSpaceID, float[]) - Method in class edu.unh.sdb.datasource.DataCollection
Reference version of getFloats( isid ) The passed array is returned for convenience, but if it is null or not the right length a new array is created and returned.
getFloats(int) - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d float array containing all values of the specified attribute using the existing axis axisOrdering.
getFloats(int, float[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill the passed 1-d float array with all values of the specified attribute using the existing axis axisOrdering.
getFloats() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d float array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getFloats(float[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getFloatsByAttribute() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d float array containing all values of all attributes in attribute order using the existing axis axisOrdering.
getFloatsByAttribute(float[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getFloatsByPoint() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d float array containing all values of all attributes in point order using the existing axis axisOrdering.
getFloatsByPoint(float[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and attribute data axisOrdering.
getGBounds() - Method in class edu.unh.sdb.lattice.Lattice
Return the Bounds of the Geometry.
getGBounds() - Method in class edu.unh.sdb.lattice.Partitioning
 
getGeometricBounds() - Method in class edu.unh.sdb.datasource.RegularISPartitioning
add by xuan
getGridISBounds() - Method in class edu.unh.sdb.lattice.CellGroupGrid
 
getGroup(IndexSpaceID) - Method in class edu.unh.sdb.lattice.SplitCellGroupGrid
 
getHeading() - Method in class edu.unh.sdb.common.EulerAngles
 
getHeight() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getHigh() - Method in class edu.unh.sdb.common.RangedTypeBuilder
Returns the high value as a double
getHighIndex() - Method in class edu.unh.sdb.datasource.IndexBlock
Get the high index
getHighValue() - Method in class edu.unh.sdb.common.RangedType
 
getID() - Method in class edu.unh.sdb.datasource.ARRSNode
get the id of the current node
getIndex() - Method in class edu.unh.sdb.lattice.CellID
 
getIndexBlock() - Method in class edu.unh.sdb.datasource.ARRSCopyLeafNode
Get the IndexBlock
getIndexBlockBounds() - Method in class edu.unh.sdb.datasource.ARRSCopyLeafNode
Get the index block bounds
getIndexDC() - Method in class edu.unh.sdb.datasource.ARRSCopyDataBlock
getIndexDC
getIndexedBlock(int) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Return the DataBlock corresponding to the specified stencil element.
getIndexedBlockAndBounds(ISBounds, int) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Return the DataBlock corresponding to the specified stencil element.
getIndexedBounds(ISBounds, int) - Method in class edu.unh.sdb.datasource.DSArrayStencil
Sets the argument ISBounds to the bounds of the specified stencil element.
getIndexedBounds(ISBounds, int) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Sets the argument ISBounds to the bounds of the specified stencil element.
getIndexedBounds(ISBounds, int) - Method in class edu.unh.sdb.datasource.DSListStencil
Set the given ISBounds to a shape equal to the indexed stencil element.
getIndexedBounds(int) - Method in class edu.unh.sdb.datasource.DSStencil
Return a new ISBounds with shape equal to the indexed stencil element.
getIndexedBounds(ISBounds, int) - Method in class edu.unh.sdb.datasource.DSStencil
sets the argument ISBounds to the bounds of the stencil element stored in this stencil list
getIndexedBounds(ISBounds, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISPartitioning
Sets the argument ISBounds to the bounds corresponding to the partition ID.
getIndexedBounds(ISBounds, IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Sets the argument ISBounds to the space bounds corresponding to the partition defined by the partitioning ID and returns the bounds as well.
getIndexedDataSource(int) - Method in class edu.unh.sdb.datasource.DSRecordSpec
Get the datasource reference at the indicated position.
getIndexedDoubleAttribute(int, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get indexedFieldShort , OneDIndex is the conceptual index of the datum in the one D array
getIndexedFieldNumber(int) - Method in class edu.unh.sdb.common.RecordSpec
Deprecated.
Use getFieldNumber( int )
getIndexedFloatAttribute(int, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get indexed float attribute , OneDIndex is the conceptual index of the datum in the one D array
getIndexedIntAttribute(int, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get indexed int attribue, OneDIndex is the conceptual index of the datum in the one D array
getIndexedOffset(int) - Method in class edu.unh.sdb.datasource.DSArrayStencil
Return the partition offset corresponding to the given index.
getIndexedOffset(int) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Return the partition offset corresponding to the given index.
getIndexedOffset(int) - Method in class edu.unh.sdb.datasource.DSListStencil
Return the partition offset corresponding to the given index.
getIndexedOffset(int) - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Return the partition offset corresponding to the given index.
getIndexedShortAttribute(int, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get indexed Short attribute, OneDIndex is the conceptual index of the datum in the one D array
getIndexes() - Method in class edu.unh.sdb.datasource.IndexBlock
Get the index block
getIndexFile() - Method in class edu.unh.sdb.ARRSTreeBuilder.ARCellParser
 
getIndexHigh() - Method in class edu.unh.sdb.datasource.ARRSCopyDataBlock
getIndexHigh
getIndexLow() - Method in class edu.unh.sdb.datasource.ARRSCopyDataBlock
getIndexLow
getIndexSpaceID() - Method in class edu.unh.sdb.datasource.URCellIterator
Get the IndexSpaceID corresponding to the cell
getInitialOrientation() - Method in class edu.unh.sdb.common.EulerAngles
 
getInitialOrientation() - Method in class edu.unh.sdb.common.EulerAnglesYXZ
 
getInitialOrientation() - Method in class edu.unh.sdb.common.EulerAnglesZYX
 
getInt(int) - Method in class edu.unh.sdb.common.ByteDatum
Return the field specified by the argument as a int.
getInt(int) - Method in class edu.unh.sdb.common.ByteValues
return the int value represent the byte value of the given index
getInt(int) - Method in class edu.unh.sdb.common.Datum
Return the field specified by the argument as a int.
getInt(int) - Method in class edu.unh.sdb.common.DoubleDatum
Return the field specified by the argument as a int.
getInt(int) - Method in class edu.unh.sdb.common.DoubleValues
return the int value of the double at given index of the double array
getInt(int) - Method in class edu.unh.sdb.common.FloatDatum
Return the field specified by the argument as a int.
getInt(int) - Method in class edu.unh.sdb.common.FloatValues
return the int value of the float at the given index of the float array
getInt(int) - Method in class edu.unh.sdb.common.IntDatum
Return the field specified by the argument as a int.
getInt(int) - Method in class edu.unh.sdb.common.IntValues
return the int value of the int at the given index of the int array
getInt(int) - Method in class edu.unh.sdb.common.MixedDatum
Return the field specified by the argument as a int.
getInt(int) - Method in class edu.unh.sdb.common.MixedValues
return the int value represented by 4 adjacent bytes, starting with the byte of the given index.
getInt(int) - Method in class edu.unh.sdb.common.ShortDatum
Return the field specified by the argument as a int.
getInt(int) - Method in class edu.unh.sdb.common.ShortValues
return the int value of the short at the given index of the short array
getInt(int) - Method in class edu.unh.sdb.common.Values
 
getInt(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.BasicBlock
get the field value at the ISID position as an int.
getInt(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the field value at the ISID position as an int.
getInt(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.DataCollection
Return the field specified by the arguments as an int.
getIntAttribute(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the int attribute for a given IndexSpaceID and attributeID
getIntAttributes(int[], RecordSpec, boolean) - Method in class edu.unh.sdb.datasource.CompositeBlock
User passes in a pre-allocated int array, attributes specified by recordSpec are copied from this Compositeblock to the dstArray.
getIntAxis(int) - Method in class edu.unh.sdb.lattice.Point
Get the value corresponding to the specified axis.
getIntersection2d() - Method in class edu.unh.sdb.datasource.Slice
 
getIntersection3d() - Method in class edu.unh.sdb.datasource.Slice
 
getInts() - Method in class edu.unh.sdb.common.ByteValues
Return int array representing all elements in the Values object
getInts(int[]) - Method in class edu.unh.sdb.common.ByteValues
fill the passed array with this data
getInts() - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum as a 1-d int array
getInts(int[]) - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum in the passed array.
getInts() - Method in class edu.unh.sdb.common.DoubleValues
Return int array representing all elements in the Values object
getInts(int[]) - Method in class edu.unh.sdb.common.DoubleValues
fill the passed array with this data
getInts() - Method in class edu.unh.sdb.common.FloatValues
Return int array representing all elements in the Values object
getInts(int[]) - Method in class edu.unh.sdb.common.FloatValues
fill the passed array with this data
getInts() - Method in class edu.unh.sdb.common.IntDatum
Return all attributes of the Datum as a 1-d int array
getInts() - Method in class edu.unh.sdb.common.IntValues
return a reference to the int array this IntValues object is representing
getInts(int[]) - Method in class edu.unh.sdb.common.IntValues
fill the passed array with this data
getInts(int, int, int) - Method in class edu.unh.sdb.common.IntValues
Return int array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getInts() - Method in class edu.unh.sdb.common.MixedValues
Return int array representing all elements in the Values object
getInts(int[]) - Method in class edu.unh.sdb.common.MixedValues
fill the passed array with this data
getInts() - Method in class edu.unh.sdb.common.ShortValues
Return int array representing all elements in the Values object
getInts(int[]) - Method in class edu.unh.sdb.common.ShortValues
fill the passed array with this data
getInts() - Method in class edu.unh.sdb.common.Values
Return int array representing all elements in the Values object
getInts(int[]) - Method in class edu.unh.sdb.common.Values
Fill int array representing all elements in the Values object If the passed array is not the right size, a a correct size array is allocated and returned.
getInts(int, int) - Method in class edu.unh.sdb.common.Values
Return int array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until we get to the end of the array.
getInts(int, int, int[]) - Method in class edu.unh.sdb.common.Values
Reference version of getInts( start, stride ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getInts(int, int, int) - Method in class edu.unh.sdb.common.Values
Return int array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getInts(int, int, int, int[]) - Method in class edu.unh.sdb.common.Values
Reference version of getInts( start, stride, num ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getInts(int[], RecordSpec, boolean) - Method in class edu.unh.sdb.datasource.BasicBlock
User passes in a pre-allocated int array, attributes specified by recordSpec are copied from the BasicBlock to the dstArray.
getInts(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataCollection
Return all attributes of the Datum as a 1-d int array
getInts(IndexSpaceID, int[]) - Method in class edu.unh.sdb.datasource.DataCollection
Reference version of getInts( isid ) The passed array is returned for convenience, but if it is null or not the right length a new array is created and returned.
getInts(int) - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d int array containing all values of the specified attribute using the existing axis axisOrdering.
getInts(int, int[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill the passed 1-d int array with all values of the specified attribute using the existing axis axisOrdering.
getInts() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d int array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getInts(int[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getIntsByAttribute() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d int array containing all values of all attributes in attribute order using the existing axis axisOrdering.
getIntsByAttribute(int[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getIntsByPoint() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d int array containing all values of all attributes in point order using the existing axis axisOrdering.
getIntsByPoint(int[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and attribute data axisOrdering.
getISBounds() - Method in class edu.unh.sdb.lattice.Partitioning
 
getISIDMap() - Method in class edu.unh.sdb.datasource.ComponentInfo
 
getISIterator() - Method in class edu.unh.sdb.datasource.ISPartitioning
Return in IndexSpace iterator over the partitions
getISIterator() - Method in class edu.unh.sdb.lattice.Partitioning
 
getIteration() - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getIterationBoundingBox() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getIterationSpace() - Method in class edu.unh.sdb.datasource.CacheDataSource
Returns a copy of the iteration space expressed as an ISBounds.
getIterationSubvolume() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
getIteratorBounds() - Method in class edu.unh.sdb.datasource.RandomBlockIterator
get the bounds of this block iterator
getLastChildID() - Method in class edu.unh.sdb.datasource.ARRSInternalNode
Get the last child's id
getLattice(String) - Method in class edu.unh.sdb.lattice.LatticeCollection
Returns the Lattice object corresponding to the Lattice named by the string
getLatticeBuilder(String) - Method in class edu.unh.sdb.lattice.XLDLReader
Returns the LatticeBuilder with the lattice name specified
getLatticeBuilders() - Method in class edu.unh.sdb.lattice.XLDLReader
Returns the list of LatticeBuilder
getLatticeCollection() - Method in class edu.unh.sdb.common.WorkSpace
Returns the LatticeCollection.
getLatticeGBounds() - Method in class edu.unh.sdb.lattice.LatticeBuilder
returns the Index Space Bounds from this builder or defaults to the topologyDS bounds
getLatticeGeometryType() - Method in class edu.unh.sdb.lattice.LatticeBuilder
 
getLatticeISBounds() - Method in class edu.unh.sdb.lattice.LatticeBuilder
returns the Index Space Bounds from this builder or defaults to the topologyDS bounds
getLattices() - Method in class edu.unh.sdb.lattice.XLDLReader
Returns the list of Datasources
getLeafBlockList() - Method in class edu.unh.sdb.datasource.ARRSCellBlockIterator
Get all the leaf blocks
getLeafCellBlock() - Method in class edu.unh.sdb.datasource.ARRSCellBlockIterator
Get a leaf cell block
getLeafList() - Method in class edu.unh.sdb.datasource.ARRSTree
Get the leaf cell block list
getLeastSignificantAxis() - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns the least significant axis for this axisOrdering.
getLengthX() - Method in class edu.unh.sdb.datasource.Volume
 
getLengthY() - Method in class edu.unh.sdb.datasource.Volume
 
getLengthZ() - Method in class edu.unh.sdb.datasource.Volume
 
getLevel() - Method in class edu.unh.sdb.lattice.MRLattice
 
getLineNormal() - Method in class edu.unh.sdb.datasource.RayIterator
 
getLocalIntersection() - Method in class edu.unh.sdb.datasource.RayCellIterator
 
getLow() - Method in class edu.unh.sdb.common.RangedTypeBuilder
Returns the low value as a double
getLower() - Method in class edu.unh.sdb.datasource.ISBounds
Return an IndexSpaceID representing the lower bounds.
getLower(int) - Method in class edu.unh.sdb.datasource.ISBounds
Return an int representing the lower bound of the specified dimension.
getLower() - Method in class edu.unh.sdb.datasource.Volume
 
getLower() - Method in class edu.unh.sdb.lattice.GBounds
Return an Point representing the upper bounds.
getLowerArray() - Method in class edu.unh.sdb.datasource.ISBounds
Return a reference to the integer array representing the upper bounds.
getLowerArray(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use copyLowerArray( int [] )
getLowerArray() - Method in class edu.unh.sdb.datasource.Volume
 
getLowerArray(float[]) - Method in class edu.unh.sdb.lattice.GBounds
Copy the lower bound coordinates into the array argument.
getLowerBoundsArray() - Method in class edu.unh.sdb.datasource.DataCollection
Return a reference to an array containing the lower bounds of this collection.
getLowIndex() - Method in class edu.unh.sdb.datasource.IndexBlock
Get the low index
getLowValue() - Method in class edu.unh.sdb.common.RangedType
 
getMap(int) - Method in class edu.unh.sdb.datasource.SparseDataSource
getMap - get the sparse block id for the specified original block
getMapper() - Method in class edu.unh.sdb.datasource.VRIndexable
Get the mapper
getMaxAttributeByteSize() - Method in class edu.unh.sdb.common.RecordDescriptor
Returns the size in bytes of the largest attribute.
getMaxBufferSize() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
get the maximum length, in bytes, of the buffer used directly with file I/O operations.
getMaxCpnID() - Method in class edu.unh.sdb.common.FieldIDMapper
Returns the maximum field number of this.componentFields.
getMaxCpsID() - Method in class edu.unh.sdb.common.FieldIDMapper
Returns the maximum field number of this.compositeFields.
getMaxDiagonal() - Method in class edu.unh.sdb.datasource.Volume
 
getMaxMemoryBlockCount() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
getMaxProjectionAxis() - Method in class edu.unh.sdb.datasource.Slice
 
getMemory() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
getMetadata(String) - Method in class edu.unh.sdb.common.MetadataCollection
Returns the Metadata object with the given name or null if it does not exist.
getMetadata() - Method in class edu.unh.sdb.datasource.FDLDescriptor
returns this objects Metadata object
getMetadataCollection() - Method in class edu.unh.sdb.datasource.DataSource
Returns the MetadataCollection associated with this DataSource's FDLDescriptor.
getMostSignificantAxis() - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns the most significant axis for this axisOrdering.
getName() - Method in class edu.unh.sdb.common.Metadata
returns the name of this Metadata object.
getName() - Method in class edu.unh.sdb.common.Type
 
getName() - Method in class edu.unh.sdb.common.TypeBuilder
Returns the name
getName() - Method in class edu.unh.sdb.common.UserTypeBuilder
Returns the name
getName() - Method in class edu.unh.sdb.common.WorkSpace
Returns the WorkSpace name as a String.
getName() - Method in class edu.unh.sdb.datasource.AliasDataSource
 
getName() - Method in class edu.unh.sdb.datasource.DataSource
Returns the name of this DataSource object.
getName() - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
 
getName() - Method in class edu.unh.sdb.datasource.TimeSeries
return time series name
getName() - Method in class edu.unh.sdb.lattice.Lattice
Return the lattice name.
getName() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the lattice name
getNames() - Method in class edu.unh.sdb.common.MetadataCollection
Returns a Set containing all the keys (names) contained in this collection.
getNode(int) - Method in class edu.unh.sdb.datasource.ARRSTree
Find the node with id number
getNodeList() - Method in class edu.unh.sdb.datasource.ARRSTree
Get all the nodes in the tree
getNormal() - Method in class edu.unh.sdb.datasource.Plane
 
getNormalArray() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return a copy of the normals array.
getNormalArray() - Method in interface edu.unh.sdb.datasource.ObliquePlaneIteratorInterface
Return a copy of the normals array.
getNormalArray() - Method in class edu.unh.sdb.datasource.Slice
Required for ObliquePlaneIteratorInterface
getNthLeastSignificantAxis(int) - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns the Nth least significant axis for this axisOrdering, counting from zero.
getNumAttributes() - Method in class edu.unh.sdb.common.Datum
Return the number of attributes in the datum.
getNumAttributes() - Method in class edu.unh.sdb.common.RecordDescriptor
Return the number of Attributes in this collection.
getNumAttributes() - Method in class edu.unh.sdb.datasource.DataCollection
return the number of attributes at each position of the index space.
getNumAttributes() - Method in interface edu.unh.sdb.datasource.Indexable
 
getNumAttributes() - Method in class edu.unh.sdb.lattice.Lattice
Return the number of attributes for this lattice.
getNumBasicBlock() - Method in class edu.unh.sdb.datasource.CompositeBlock
return number of basicBlocks contained in this Compositeblock
getNumberOfElements() - Method in class edu.unh.sdb.datasource.RayIterator
 
getNumberOfFields() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns the number of fields in a record descriptor as an integer
getNumBoxes(int) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getNumCells() - Method in class edu.unh.sdb.lattice.CellGroup
 
getNumCells() - Method in class edu.unh.sdb.lattice.FileArrayCellGroup
 
getNumCells() - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
getNumCells() - Method in class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
getNumCells() - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroup
 
getNumCells() - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroupGrid
 
getNumChildren() - Method in class edu.unh.sdb.datasource.ARRSInternalNode
get number of children
getNumDSatLevel(int) - Method in class edu.unh.sdb.datasource.MRDataSource
int getNumDSatLevel( int )
getNumLevels() - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getNumOfNodes() - Method in class edu.unh.sdb.datasource.ARRSTree
Get the number of all the nodes in the tree
getNumResolutionLevels() - Method in class edu.unh.sdb.datasource.MRDataSource
int getNumResolutionLevels()
getNumSteps() - Method in class edu.unh.sdb.datasource.TimeSeries
return number of steps in time series
getNumStorageTypes() - Static method in class edu.unh.sdb.common.StorageType
Return the number of distinct StorageTypes.
getNumUsedTypes() - Method in class edu.unh.sdb.common.RecordDescriptor
Return the number of distinct storage types defined by this RecordDescriptor.
getNumValidBoxes(int, ISBounds) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getNumVertices() - Method in class edu.unh.sdb.lattice.Cell
 
getOffsetBounds(ISBounds, long) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Sets the argument ISBounds to the bounds corresponding to the partition offset.
getOffsetID(long) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Returns a new ISID corresponding to the 1D partition offset.
getOffsetID(IndexSpaceID, long) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Sets the argument ISID to the value corresponding to the 1D partition offset.
getOffsetISID() - Method in class edu.unh.sdb.datasource.RegularPartitionISID
return the ISID of the location relative to the partition it is in.
getOrdering() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Deprecated. 
getOrdering() - Method in class edu.unh.sdb.datasource.ISIterator
Deprecated. 
getOriginalBeginPoint() - Method in class edu.unh.sdb.datasource.RayIterator
 
getOriginalEndPoint() - Method in class edu.unh.sdb.datasource.RayIterator
 
getOverlapBlockManager() - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Return the OverlapBlockManager, from which you can get information for each Component.
getPart(IndexSpaceID) - Method in class edu.unh.sdb.datasource.SparseDataSource
returns an array of ISBounds representing the pieces of the input bounds that have data in this sparse data source.
getPartitionBoundary(IndexSpaceID, int, boolean) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
If upper is true, return the upper value of the specified axis of the partition specified by the partition id, otherwise, return the lower value.
getPartitionBounds(ISBounds) - Method in class edu.unh.sdb.datasource.RegularPartitionISID
Change the parameter to describe the bounds in space coordinates of the partition containing this position.
getPartitionBounds() - Method in class edu.unh.sdb.datasource.RegularPartitionISID
Return the bounds in space coordinates of the partition containing this position.
getPartitionDimensions() - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Returns the dimensions of an element as an IndexSpaceID.
getPartitionDimensionsArray() - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Returns the dimensions of an element as an int array.
getPartitionID() - Method in class edu.unh.sdb.lattice.CellID
 
getPartitionIndex(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
return the partition index (1D order position of the partitions).
getPartitionIndex() - Method in class edu.unh.sdb.datasource.RegularPartitionISID
return integer (long) index of the partition, which is the 1D location of this partition in the partitioning space (not the data space).
getPartitioning() - Method in class edu.unh.sdb.datasource.MultiBlockCacheDataSource
Return a partitioning corresponding to the manner in which the iteration space is divided into cache block regions by the cache.
getPartitioning() - Method in class edu.unh.sdb.lattice.Geometry
 
getPartitioningBounds() - Method in class edu.unh.sdb.datasource.ISPartitioning
 
getPartitioningDimensions() - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Return an array of integers indicating the dimensions of the partitioning.
getPartitioningDimensions(int[]) - Method in class edu.unh.sdb.datasource.ISPartitioning
Return the dimensions of the partitioning and fill in those dimensions in the passed argument.
getPartitioningShape() - Method in class edu.unh.sdb.datasource.ISPartitioning
Return the dimensions of the partitioning
getPartitioningShape(int[]) - Method in class edu.unh.sdb.datasource.ISPartitioning
Return the dimensions of the partitioning and fill in those dimensions in the passed argument.
getPartitionIterator(ISBounds) - Method in class edu.unh.sdb.datasource.ISPartitioning
Create and return an iterator over the partitions that cover the data space bounds defined by the parameter.
getPartitionIterator() - Method in class edu.unh.sdb.datasource.RegularISPartitioning
 
getPartitionIterator(ISBounds) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
 
getPartitionIterator(ISBounds, ISBoundsIterator) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
 
getPartitionIterator() - Method in class edu.unh.sdb.lattice.Partitioning
 
getPartitionIterator() - Method in class edu.unh.sdb.lattice.RegularCellPartitioning
 
getPartitionIterator() - Method in class edu.unh.sdb.lattice.RegularPartitioning
 
getPartitionIterator(GBounds, GBoundsIterator) - Method in class edu.unh.sdb.lattice.RegularPartitioning
 
getPartitionListBytes(byte[]) - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Fill the given array with a representation of the partition list.
getPartitionListBytesLength() - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Return the number of bytes used by the last call to getPartitionListBytes().
getPartitionSpaceBounds() - Method in class edu.unh.sdb.datasource.ChunkedDataSource
return the ISBounds of this chunkedDataSource in partitioned Space
getParts(ISBounds) - Method in class edu.unh.sdb.datasource.SparseDataSource
returns an array of ISBounds representing the pieces of the input bounds that have data in this sparse data source.
getPath() - Method in class edu.unh.sdb.datasource.ARRSCellID
Get the path of a cell in a ARRS tree
getPath() - Method in class edu.unh.sdb.datasource.ARRSNode
get the path of the current node
getPath() - Method in class edu.unh.sdb.datasource.RegCellDataSource
Get the path of an uniform region cell datasource in a ARRS tree
getPath() - Method in class edu.unh.sdb.datasource.URCellBlock
Get the path of an uniform region cell block in a ARRS tree
getPitch() - Method in class edu.unh.sdb.common.EulerAngles
 
getPlane() - Method in class edu.unh.sdb.datasource.Slice
 
getPlane3DVertices(IndexSpaceID[]) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
getPlaneShapeArray() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return an array indicating the 2D shape of the iteration plane.
getPlaneShapeArray() - Method in interface edu.unh.sdb.datasource.ObliquePlaneIteratorInterface
Returns the dimensions of the projection of the iteration parallelogram to the orthogonal plane that contains the maximum projection area
getPlaneShapeArray() - Method in class edu.unh.sdb.datasource.Slice
 
getPlaneVolume() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return the volume of the iteration plane.
getPointData() - Method in class edu.unh.sdb.datasource.ARRSCopyDataBlock
getPointPDS
getPointDataBlock() - Method in class edu.unh.sdb.datasource.URCellBlock
Get the data source
getPointDS() - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Get the point datasource
getPointDS() - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Get the point datasource
getPointDS() - Method in class edu.unh.sdb.datasource.RegCellDataSource
Get the point data source relative to a cell data souce
getPointInfoFDLFileName() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the pointInfoFDLFileName
getPosition() - Method in class edu.unh.sdb.datasource.CellID
Get the position of a cell in a cell space
getPosition(IndexSpaceID) - Method in class edu.unh.sdb.datasource.CellID
Set the position of a cell in a cell space
getProbDomain(int) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getProjectedNormalArray() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return a projection of the normals array onto the projection Axis.
getProjectionAxis() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return the axis along which the iterator will project the plane.
getProperty(String) - Method in class edu.unh.sdb.common.Metadata
Returns the property value associated with the key.
getPublicDS(String) - Method in class edu.unh.sdb.datasource.XDDLReader
 
getRatioX() - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
getRatioY() - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
getRatioZ() - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
getReadCounter() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
 
getReadLength() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
 
getRecordDescriptor() - Method in class edu.unh.sdb.common.MixedDatum
Return the RecordDescriptor associated with MixedDatum.
getRecordDescriptor() - Method in class edu.unh.sdb.datasource.BlockManager
Return the RecordDescriptor of this BlockManager
getRecordDescriptor() - Method in class edu.unh.sdb.datasource.ComponentInfo
return the current recordDescriptor for this componentInfo
getRecordDescriptor() - Method in class edu.unh.sdb.datasource.DataBlockCollection
 
getRecordDescriptor() - Method in class edu.unh.sdb.datasource.DataCollection
Returns a copy of the RecordDescriptor
getRecordDescriptor() - Method in class edu.unh.sdb.datasource.FDLDescriptor
generate a record descriptor using the fieldNames and fieldTypes vectors if there are no field names/types, then an empty RecordDescriptor will be returned
getRecordDescriptor() - Method in interface edu.unh.sdb.datasource.Indexable
 
getRecordDescriptor() - Method in class edu.unh.sdb.lattice.Lattice
Return a RecordDescriptor for datums returned by this lattice.
getRecordDescriptor() - Method in class edu.unh.sdb.lattice.RectilinearTopology
Return a RecordDescriptor for datums returned by this topology.
getRecordDescriptor() - Method in class edu.unh.sdb.lattice.Topology
Return a RecordDescriptor for datums returned by this topology.
getRecordDescriptor() - Method in class edu.unh.sdb.lattice.UnstructuredTopology
Return a RecordDescriptor for datums returned by this topology.
getRecordSize() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns the Record Size as an integer(not used)
getRefRatio(int) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getRegionData() - Method in class edu.unh.sdb.datasource.ARRSLeafNode
Get the uniform region cell data
getRootDirectory() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Return the directory that is considered to the 'root' directory for searching for the data file.
getRotation() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getShort(int) - Method in class edu.unh.sdb.common.ByteDatum
Return the field specified by the argument as a short.
getShort(int) - Method in class edu.unh.sdb.common.ByteValues
return the short value represent the byte value of the given index
getShort(int) - Method in class edu.unh.sdb.common.Datum
Return the field specified by the argument as a short.
getShort(int) - Method in class edu.unh.sdb.common.DoubleDatum
Return the field specified by the argument as a short.
getShort(int) - Method in class edu.unh.sdb.common.DoubleValues
return the short value of the double at given index of the double array
getShort(int) - Method in class edu.unh.sdb.common.FloatDatum
Return the field specified by the argument as a short.
getShort(int) - Method in class edu.unh.sdb.common.FloatValues
return the short value of the float at the given index of the float array
getShort(int) - Method in class edu.unh.sdb.common.IntDatum
Return the field specified by the argument as a short.
getShort(int) - Method in class edu.unh.sdb.common.IntValues
return the short value of the int at the given index of the int array
getShort(int) - Method in class edu.unh.sdb.common.MixedDatum
Return the field specified by the argument as a short.
getShort(int) - Method in class edu.unh.sdb.common.MixedValues
return the short value represented by 2 adjacent bytes, starting with the byte of the given index.
getShort(int) - Method in class edu.unh.sdb.common.ShortDatum
Return the field specified by the argument as a short.
getShort(int) - Method in class edu.unh.sdb.common.ShortValues
return the short value at the given index of the array
getShort(int) - Method in class edu.unh.sdb.common.Values
 
getShort(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.BasicBlock
get the field value at the ISID position as a short.
getShort(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the field value at the ISID position as a short.
getShort(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.DataCollection
Return the field specified by the arguments as a short.
getShortAttribute(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
get the short attribute for a given IndexSpaceID and attributeID
getShortAttributes(short[], RecordSpec, boolean) - Method in class edu.unh.sdb.datasource.CompositeBlock
User passes in a pre-allocated short array, attributes specified by recordSpec are copied from the BasicBlock to the dstArray.
getShorts() - Method in class edu.unh.sdb.common.ByteValues
Return a short array representing all elements in the Values object
getShorts(short[]) - Method in class edu.unh.sdb.common.ByteValues
fill the passed array with this data
getShorts() - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum as a 1-d short array
getShorts(short[]) - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum in the passed array.
getShorts() - Method in class edu.unh.sdb.common.DoubleValues
Return a short array representing all elements in the Values object
getShorts(short[]) - Method in class edu.unh.sdb.common.DoubleValues
fill the passed array with this data
getShorts() - Method in class edu.unh.sdb.common.FloatValues
Return a short array representing all elements in the Values object
getShorts(short[]) - Method in class edu.unh.sdb.common.FloatValues
fill the passed array with this data
getShorts() - Method in class edu.unh.sdb.common.IntValues
Return a short array representing all elements in the Values object
getShorts(short[]) - Method in class edu.unh.sdb.common.IntValues
fill the passed array with this data
getShorts() - Method in class edu.unh.sdb.common.MixedValues
Return a short array representing all elements in the Values object
getShorts(short[]) - Method in class edu.unh.sdb.common.MixedValues
fill the passed array with this data
getShorts() - Method in class edu.unh.sdb.common.ShortDatum
Return all attributes of the Datum as a 1-d short array
getShorts() - Method in class edu.unh.sdb.common.ShortValues
return a reference to the array this ShortValues object is representing
getShorts(short[]) - Method in class edu.unh.sdb.common.ShortValues
fill the passed array with this data
getShorts(int, int, int) - Method in class edu.unh.sdb.common.ShortValues
Return short array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getShorts() - Method in class edu.unh.sdb.common.Values
Return a short array representing all elements in the Values object
getShorts(short[]) - Method in class edu.unh.sdb.common.Values
Fill short array representing all elements in the Values object If the passed array is not the right size, an warning is issued and a correct size array is allocated and returned.
getShorts(int, int) - Method in class edu.unh.sdb.common.Values
Return short array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until we get to the end of the array.
getShorts(int, int, short[]) - Method in class edu.unh.sdb.common.Values
Reference version of getShorts( start, stride ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getShorts(int, int, int) - Method in class edu.unh.sdb.common.Values
Return short array representing a subset of elements in the Values object Copying starts at the index specified by the start argument, the 2nd item copied will be at index start + stride where stride is the second argument; the 3rd is at start + 2*stride and so forth until the specified number of values have been copied (3rd argument).
getShorts(int, int, int, short[]) - Method in class edu.unh.sdb.common.Values
Reference version of getShorts( start, stride, num ) The passed array is returned for convenience, but if it is not the right size, a new array is allocated and returned.
getShorts(short[], RecordSpec, boolean) - Method in class edu.unh.sdb.datasource.BasicBlock
User passes in a pre-allocated short array, attributes specified by recordSpec are copied from the BasicBlock to the dstArray.
getShorts(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataCollection
Return all attributes of the Datum as a 1-d short array
getShorts(IndexSpaceID, short[]) - Method in class edu.unh.sdb.datasource.DataCollection
Reference version of getShorts( isid ) The passed array is returned for convenience, but if it is null or not the right length a new array is created and returned.
getShorts(int) - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d short array containing all values of the specified attribute using the existing axis axisOrdering.
getShorts(int, short[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill the passed 1-d short array with all values of the specified attribute using the existing axis axisOrdering.
getShorts() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d short array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getShorts(short[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getShortsByAttribute() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d short array containing all values of all attributes in attribute order using the existing axis axisOrdering.
getShortsByAttribute(short[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and data axisOrdering (attribute vs.
getShortsByPoint() - Method in class edu.unh.sdb.datasource.DataCollection
Return a 1-d short array containing all values of all attributes in point order using the existing axis axisOrdering.
getShortsByPoint(short[]) - Method in class edu.unh.sdb.datasource.DataCollection
Fill a 1-d array containing all values of all attributes using the existing axis axisOrdering and attribute data axisOrdering.
getSibling(ArrayList) - Method in class edu.unh.sdb.datasource.ARRSNode
get the sibling of the current node
getSibling(ARRSNode) - Method in class edu.unh.sdb.datasource.ARRSTree
Get the sibling of the specified node
getSiblingID() - Method in class edu.unh.sdb.datasource.ARRSNode
get the the id of the sibling
getSliceNormal() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getSocketRef(ServerSocket) - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Method to provide a reference to the welcomeSocket on client.
getSource() - Method in class edu.unh.sdb.datasource.CacheDataSource
Return a reference to the DataSource that backs this CacheDataSource.
getSource() - Method in class edu.unh.sdb.datasource.VRIndexable
Get source
getSourceIndexable() - Method in class edu.unh.sdb.datasource.VRIndexable
Return the DataSource on which this VRDS is built
getSources() - Method in class edu.unh.sdb.common.FieldIDMapper
Returns the source identifier array This is the same as getComponentFields(), but FieldIDMapper need not be restricted to Component/Composite mapping
getSpaceBounds() - Method in class edu.unh.sdb.datasource.DSStencil
added by Sridhar
getSpaceBounds() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Returns an ISBounds representing the space being iterated over.
getSpaceBounds() - Method in class edu.unh.sdb.datasource.ISIterator
Deprecated.
Use getBounds()
getSpaceBounds() - Method in class edu.unh.sdb.datasource.ISPartitioning
Return the bounds of the data space underlying the partitioning
getSpaceBounds() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Returns an ISBounds representing the dimensions of the space being iterated over.
getSpaceBounds() - Method in interface edu.unh.sdb.datasource.ObliquePlaneIteratorInterface
Returns an ISBounds representing the dimensions of the space being iterated over.
getSpaceBounds() - Method in class edu.unh.sdb.datasource.Slice
 
getSpaceDimensions() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Returns an ISBounds representing the shape, but not the position, of the space being iterated over.
getSpaceDimensionsArray() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Returns an array of ints representing the dimensions of the space being iterated over.
getSpaceShapeArray() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Returns an array of ints representing the dimensions of the space being iterated over.
getSpaceShapeArray() - Method in interface edu.unh.sdb.datasource.ObliquePlaneIteratorInterface
Returns an array of ints representing the dimensions of the space being iterated over.
getSpaceShapeArray() - Method in class edu.unh.sdb.datasource.Slice
 
getSparseBlockMap() - Method in class edu.unh.sdb.datasource.FDLDescriptor
returns this objects Sparse block mapper information
getStart() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getStatistics() - Method in class edu.unh.sdb.datasource.DataSource
Generate a string indicating statistics for performance evaluation.
getStatistics() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
getStencil() - Method in class edu.unh.sdb.datasource.DSPartitionedStencilIterator
Return a reference to the stencil.
getStencilBlocks(DSBlockStencil) - Method in class edu.unh.sdb.datasource.ChomboRemoteClient
 
getStencilBlocks(DSBlockStencil) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
this method will extract data from datasource on remote server using UDT or UDP logic.
getStencilBlocks(DataBlockCollection) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
this method will extract data from datasource on remote server using UDT or UDP logic.
getStencilBlocks(DSBlockStencil) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
this method will extract data from datasource on remote server using UFTP logic.
getStencilBlocks(DataBlockCollection) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
this method will extract data from datasource on remote server using UFTP logic.
getStep() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getStep() - Method in class edu.unh.sdb.datasource.RayIterator
 
getStep() - Method in class edu.unh.sdb.datasource.SliceIterator
 
getStep(int) - Method in class edu.unh.sdb.datasource.TimeSeries
Return an element in the series based on ordinal position
getSteps() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return an IndexSpaceID representing the iterator's steps.
getSteps() - Method in class edu.unh.sdb.lattice.GBoundsGapIterator
Return an IndexSpaceID representing the iterator's steps.
getStorageType() - Method in class edu.unh.sdb.common.AttributeDescriptor
Return the storage type of the attribute as an int constant.
getStorageType(int) - Static method in class edu.unh.sdb.common.AttributeDescriptor
Extract and return the storage type encoded in the integer argument.
getStorageType() - Method in class edu.unh.sdb.common.ByteDatum
Return the StorageType for this Datum
getStorageType() - Method in class edu.unh.sdb.common.ByteValues
get StorageType
getStorageType() - Method in class edu.unh.sdb.common.Datum
Return the StorageType for this Datum.
getStorageType() - Method in class edu.unh.sdb.common.DoubleDatum
Return the StorageType for this Datum
getStorageType() - Method in class edu.unh.sdb.common.DoubleValues
get StorageType
getStorageType() - Method in class edu.unh.sdb.common.FloatDatum
Return the StorageType for this Datum
getStorageType() - Method in class edu.unh.sdb.common.FloatValues
return the storageType of this FloatValues, The data type of the array used to store the actual data
getStorageType() - Method in class edu.unh.sdb.common.IntDatum
Return the StorageType for this Datum
getStorageType() - Method in class edu.unh.sdb.common.IntValues
get storage Type
getStorageType() - Method in class edu.unh.sdb.common.MixedDatum
Return the StorageType for this Datum
getStorageType() - Method in class edu.unh.sdb.common.MixedValues
get StorageType
getStorageType() - Method in class edu.unh.sdb.common.RangedType
 
getStorageType(int) - Method in class edu.unh.sdb.common.RecordDescriptor
Return the storage type of an attribute at the specified position.
getStorageType() - Method in class edu.unh.sdb.common.RecordDescriptor
Return the underlying storage type for the entire record.
getStorageType() - Method in class edu.unh.sdb.common.ShortDatum
Return the StorageType for this Datum
getStorageType() - Method in class edu.unh.sdb.common.ShortValues
get the storage type
getStorageType() - Method in class edu.unh.sdb.common.UserType
 
getStorageType() - Method in class edu.unh.sdb.common.Values
 
getStorageType() - Method in class edu.unh.sdb.datasource.DataBlockCollection
 
getStorageType() - Method in class edu.unh.sdb.datasource.DataCollection
return the storage type for this collection
getStorageType() - Method in class edu.unh.sdb.datasource.DSBlockStencil
 
getStorageTypeName() - Method in class edu.unh.sdb.common.UserTypeBuilder
Returns the name of the storage type.
getStorageTypes() - Method in class edu.unh.sdb.common.RecordDescriptor
Return an array of storage types; there is one entry per attribute.
getStorageTypeValue() - Method in class edu.unh.sdb.common.UserTypeBuilder
Returns the integer value from the TypeTable of the storage type.
getSubBounds() - Method in class edu.unh.sdb.datasource.ARRSClippedCopyLeafNode
Get a subbounds
getTBounds() - Method in class edu.unh.sdb.lattice.Lattice
Return the Bounds of the Topology.
getTextureCoordinates() - Method in class edu.unh.sdb.datasource.Slice
 
getTextureData() - Method in class edu.unh.sdb.datasource.Slice
 
getTextureDimensions() - Method in class edu.unh.sdb.datasource.Slice
 
getTime() - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
getTime(int) - Method in class edu.unh.sdb.datasource.TimeSeries
Return the real time for an element in the series based on ordinal position
getTopologyGBounds() - Method in class edu.unh.sdb.lattice.LatticeBuilder
returns the Index Space Bounds from this builder or defaults to the topologyDS bounds
getTopologyGeometryType() - Method in class edu.unh.sdb.lattice.LatticeBuilder
 
getTopologyISBounds() - Method in class edu.unh.sdb.lattice.LatticeBuilder
returns the Index Space Bounds from this builder or defaults to the topologyDS bounds
getTopologyType() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the topology type as an integer
getTransferFunction() - Method in class edu.unh.sdb.datasource.RayIterator
 
getTriangleDS() - Method in class edu.unh.sdb.lattice.UnstructuredTopology
 
getType() - Method in class edu.unh.sdb.datasource.TransferFunction
 
getTypeCode(String) - Method in class edu.unh.sdb.common.TypeTable
Return the typecode corresponding to the type name.
getTypeName() - Method in class edu.unh.sdb.common.AttributeDescriptor
Return the type name of this AttributeDescriptor as a String.
getTypeName(int) - Method in class edu.unh.sdb.common.TypeTable
Return the type name corresponding to the typecode.
getTypeName() - Method in class edu.unh.sdb.datasource.XTDLReader
Returns the Type name
getTypes() - Method in class edu.unh.sdb.common.RecordDescriptorBuilder
Returns the type table.
getTypes() - Method in class edu.unh.sdb.datasource.XTDLReader
returns the TypeTable collection class
getTypeTable() - Method in class edu.unh.sdb.common.WorkSpace
Returns the TypeTable.
getUpper(int) - Method in class edu.unh.sdb.datasource.ISBounds
Return an int representing the upper bound of the specified dimension.
getUpper() - Method in class edu.unh.sdb.datasource.ISBounds
Return an IndexSpaceID representing the upper bounds.
getUpper() - Method in class edu.unh.sdb.datasource.Volume
 
getUpper() - Method in class edu.unh.sdb.lattice.GBounds
Return an Point representing the lower bounds.
getUpperArray() - Method in class edu.unh.sdb.datasource.ISBounds
Return a reference to the integer array representing the upper bounds.
getUpperArray(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use copyUpperArray( int [] )
getUpperArray() - Method in class edu.unh.sdb.datasource.Volume
 
getUpperArray(float[]) - Method in class edu.unh.sdb.lattice.GBounds
Copy the upper bound coordinates into the array argument.
getUpperBoundsArray() - Method in class edu.unh.sdb.datasource.DataCollection
Return a reference to an array containing the upper bounds of this collection.
getURL(String) - Method in class edu.unh.sdb.common.WorkSpace
Returns the URL of the primary database which the DataSource specified by the name is saved
getURL() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Return a copy of the URL for this datasource.
getURL() - Method in class edu.unh.sdb.mdb.DBIF
 
getUrlByDBName(String) - Method in class edu.unh.sdb.mdb.DBIF
 
getUsedType(int) - Method in class edu.unh.sdb.common.RecordDescriptor
Get the StorageType of the i-th distinct storage type in this RecordDescriptor.
getUsedTypeCount(int) - Method in class edu.unh.sdb.common.RecordDescriptor
Get the count of attributes of the i-th distinct storage type in this RecordDescriptor.
getUsedTypes() - Method in class edu.unh.sdb.common.RecordDescriptor
Get the an array of all StorageTypes used in this RecordDescriptor.
getUserHome() - Method in class edu.unh.sdb.common.Configuration
 
getUserTypeNumber() - Method in class edu.unh.sdb.common.AttributeDescriptor
Extract and return the user type number for this AttributeDescriptor.
getUserTypeNumber(int) - Static method in class edu.unh.sdb.common.AttributeDescriptor
Extract and return the user type encoded in the integer argument.
getValues() - Method in class edu.unh.sdb.common.ByteDatum
Return all attributes of the Datum as a Values object
getValues() - Method in class edu.unh.sdb.common.Datum
Return all attributes of the Datum in a Values object
getValues() - Method in class edu.unh.sdb.common.DoubleDatum
Return all attributes of the Datum as a Values object
getValues() - Method in class edu.unh.sdb.common.FloatDatum
Return all attributes of the Datum as a Values object
getValues() - Method in class edu.unh.sdb.common.IntDatum
Return all attributes of the Datum as a Values object
getValues() - Method in class edu.unh.sdb.common.MixedDatum
Return all attributes of the Datum as a Values object
getValues() - Method in class edu.unh.sdb.common.ShortDatum
Return all attributes in a Values object
getValues() - Method in class edu.unh.sdb.datasource.BasicBlock
return the Values (data) store in this basicBlock
getValues(int) - Method in class edu.unh.sdb.datasource.BasicBlock
return a Values array consisting of the data for the specified attribute.
getValues(int) - Method in class edu.unh.sdb.datasource.CompositeBlock
return a Values array consisting of the data for the specified attribute.
getValues() - Method in class edu.unh.sdb.datasource.DataBlock
Returns a Values array which encapsulates a 1D array of the data values in the block with one entry for every point in the block.
getValues() - Method in class edu.unh.sdb.datasource.DataCollection
Return a Values array of all attributes in whatever type and order they are stored internally (either attribute order or point order for Granite-defined objects).
getValues(int) - Method in class edu.unh.sdb.datasource.DataCollection
Return a Values array of the specified attribute in whatever type it has internally.
getValues() - Method in class edu.unh.sdb.datasource.DataSource
Return a Values array of all attributes in the entire DataSource in whatever type and order they are stored internally (either attribute order or point order for Granite-defined objects).
getValues() - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
 
getValues() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
return the Values (data) stored in this basicBlock
getValues() - Method in class edu.unh.sdb.datasource.RayCellIterator
Returns the Values of the current DataBlock.
getValues() - Method in class edu.unh.sdb.datasource.SparseDataSource
Return a Values array of all attributes in whatever type and order they are stored internally (either attribute order or point order for Granite-defined objects).
getValues() - Method in class edu.unh.sdb.datasource.VRIndexable
Return a Values array of all attributes in whatever type and order they are stored internally (either attribute order or point order for Granite-defined objects).
getValuesByAttribute() - Method in class edu.unh.sdb.datasource.DataCollection
Return a Values array of all attributes in their internal type in the attribute order.
getValuesByPoint() - Method in class edu.unh.sdb.datasource.DataCollection
Return a Values array of all attributes in their internal type in the point order.
getVertex(int, int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Fills the second argument with the coordinates of the specified vertex.
getVertex(int, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Fills the second argument with the coordinates of the specified vertex.
getVertexCoords() - Method in class edu.unh.sdb.lattice.Cell
 
getVertexFileIndicesName(int) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the vertexIndicesName
getVertexIndicesRecordSpec() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the vertexIndicesRecordSpec for SplitUnstructuredTopology
getVertices() - Method in class edu.unh.sdb.datasource.Cell
Get the corners of a cell
getViewingDirection() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
getVIndicesFDLFileName() - Method in class edu.unh.sdb.lattice.LatticeBuilder
Returns the vIndicesFDLFileName
getVolume() - Method in class edu.unh.sdb.datasource.Slice
 
getWindowElement(int) - Method in class edu.unh.sdb.datasource.RandomBlockIterator
return the ISBounds of an indexed enumeration window element
getWorkSpace(URL) - Static method in class edu.unh.sdb.common.WorkSpaceManager
Return the WorkSpace with the given name.
GIterator - Class in edu.unh.sdb.lattice
Child class of Point.
GIterator(GBounds) - Constructor for class edu.unh.sdb.lattice.GIterator
Constructor taking an GBounds, which specifies the IndexSpace
GIterator(GBounds, AxisOrdering) - Constructor for class edu.unh.sdb.lattice.GIterator
Constructor taking an GBounds, which specifies the Domain, and the AxisOrdering which specifies the axis incrementation order
GIterator(GBounds, float[]) - Constructor for class edu.unh.sdb.lattice.GIterator
Constructor taking an GBounds, which specifies the Domain and the steps array allowing GIterator increment step other than 1
GIterator(GBounds, AxisOrdering, float[]) - Constructor for class edu.unh.sdb.lattice.GIterator
Constructor taking an GBounds, AxisOrdering and steps array
Globals - Class in edu.unh.sdb.common
The Globals class holds static data members that represent properties and variables that are global to the SDB system.
Globals() - Constructor for class edu.unh.sdb.common.Globals
 
globalVal - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
globalVal - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
globalVal - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
gradient(DataBlock, IndexSpaceID, int) - Static method in class edu.unh.sdb.datasource.TransferFunction
 
GraniteRemoteClient - Class in edu.unh.sdb.datasource
This class will read data from a remote datasource using UDT or UDP logic.
GraniteRemoteClient(String, RecordDescriptor, ISBounds, AxisOrdering, String, String) - Constructor for class edu.unh.sdb.datasource.GraniteRemoteClient
GraniteRemoteClient class constructor.
greaterThanOrEqual(IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
A helper function that returns true if all the coordinates of this id are greater than or equal to the corresponding coordinates of the parameter id.
greaterThanOrEqual(Point) - Method in class edu.unh.sdb.lattice.Point
A helper function that returns true if all the coordinates of this id are greater than or equal to the corresponding coordinates of the parameter id.
groupGrid - Variable in class edu.unh.sdb.lattice.UnstructuredTopology
 
groups - Variable in class edu.unh.sdb.lattice.CellGroupGrid
 

H

halt() - Method in class edu.unh.sdb.datasource.ThreadedBlockCacheDataSource
Any lingering IO threads will have terminated after this method completes.
halt() - Method in class edu.unh.sdb.datasource.ThreadedSliceCacheDataSource
Any lingering IO threads will have terminated after this method completes.
hashCode() - Method in class edu.unh.sdb.datasource.BinaryFileDataSource
 
hashCode() - Method in class edu.unh.sdb.datasource.PointOrderBFDS
 
hasIntersection(ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.BlockManager
 
hasMoreElements() - Method in class edu.unh.sdb.datasource.ISIterator
Return true if this ISIterator can be incremented.
hasMoreElements() - Method in class edu.unh.sdb.datasource.RayCellIterator
Return true if this ISIterator can be incremented.
hasMoreElements() - Method in class edu.unh.sdb.lattice.GIterator
Return true if this GIterator can be incremented.
hasSameShape(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Returns true if the argument bounds has the same shape as this ISBounds, and false otherwise.
havePendingCell - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
headerLength - Variable in class edu.unh.sdb.datasource.DSPartitionedStencil
 

I

identity(int[]) - Static method in class edu.unh.sdb.common.FieldIDMapper
Assign identity mapping to the argument array "identity" mapping: 0,1, ...
identityArray(int) - Static method in class edu.unh.sdb.common.FieldIDMapper
Create a integer array of specified length, initialized to the "identity" mapping: 0,1, ...
IllegalArgumentError - Class in edu.unh.sdb.common
 
IllegalArgumentError(int, String) - Constructor for class edu.unh.sdb.common.IllegalArgumentError
 
IllegalArgumentException - Exception in edu.unh.sdb.common
This exception is thrown whenever an illegal argument is passed to a method, and the situation is not covered specifically by another exception type like DimensionalityException, BoundsException, etc.
inBounds(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISPartitioning
Return true if the argument represents a partition coordinate that is within the bounds of this partitioning.
inBounds(int[]) - Method in class edu.unh.sdb.datasource.ISPartitioning
Return true if the argument represents a partition coordinate that is within the bounds of this partitioning.
InCoreArrayCellGroup - Class in edu.unh.sdb.lattice
 
InCoreArrayCellGroup(GBounds, int[], float[], float[], int, DataBlock, ISIterator) - Constructor for class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
InCoreArrayCellGroupGrid - Class in edu.unh.sdb.lattice
 
InCoreArrayCellGroupGrid(FDLDescriptor, GBounds, AxisOrdering, int[], float[], float[], int) - Constructor for class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
incr() - Method in class edu.unh.sdb.datasource.VRDataBlock
Increase Resolution Level by 1
incr() - Method in class edu.unh.sdb.datasource.VRDataSource
Increase Resolution Level by 1
incr() - Method in class edu.unh.sdb.datasource.VRIndexable
Increase Resolution Level by 1
increase(int) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use copyIncreasedBy( int )
increaseByOne() - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use copyIncreasedBy( 1 )
increaseByOne(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
rdb: I find the semantics very confusing. One would expect that the this object would be the one changed, not the argument object. Why do we need this? It is exactly the same as b.increaseByOne(); All other similar methods either change "this" or return a new object (except increaseByOne(ISB)).
incrementAxis(int) - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
this is a help fuction for next() function, which is to set a specified value to the specified axis if the value is in bounds
incrementAxis(int) - Method in class edu.unh.sdb.datasource.CellBoundsIterator
this is a help fuction for next() function, which is to set a specified value to the specified axis if the value is in bounds
incrementAxis(int) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
this is a help fuction for next() function, which is to set a specified value to the specified axis if the value is in bounds
incrementIndex() - Method in class edu.unh.sdb.lattice.CellID
 
index - Variable in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator.IOThread
 
Indexable - Interface in edu.unh.sdb.datasource
An interface for classes that can be thought of as an index space.
IndexBlock - Class in edu.unh.sdb.datasource
 
IndexBlock(float[], int, int) - Constructor for class edu.unh.sdb.datasource.IndexBlock
Constructor takes three arguments
indexOf(String) - Method in class edu.unh.sdb.datasource.DataSourceCollection
Returns the integer index of the datasource corresponding to the DataSource named by the string.
indexOf(String) - Method in class edu.unh.sdb.lattice.LatticeCollection
Returns the integer index of the Lattice corresponding to the Lattice named by the string.
indexOfName(String) - Method in class edu.unh.sdb.datasource.DataSourceCollection
Returns the integer index value for the DataSource denoted by string.
indexOfName(String) - Method in class edu.unh.sdb.lattice.LatticeCollection
Returns the integer index value for the Lattice denoted by string.
IndexSpaceID - Class in edu.unh.sdb.datasource
The IndexSpaceID class represents points in a DataSource index space
IndexSpaceID() - Constructor for class edu.unh.sdb.datasource.IndexSpaceID
 
indexValues - Variable in class edu.unh.sdb.ARRSTreeBuilder.ARRSCopyModelBuilder
 
inFile - Variable in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
iniOffset - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
init() - Method in interface edu.unh.sdb.common.SDBIterator
Perform any necessary initialization, and set the iterator value to the first value in the iteration.
Init() - Static method in class edu.unh.sdb.datasource.AppMonitor
 
init() - Method in class edu.unh.sdb.datasource.ARBlock
reset the interating position
init() - Method in class edu.unh.sdb.datasource.ARRSCellBlockIterator
Initialize this CellBlockIterator
init() - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
 
init() - Method in class edu.unh.sdb.datasource.ARRSCellIterator
Initialize this ARRSCellIterator
init(ISBounds) - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
this is a help function for constructor, which is to set the Geometric bounds and initial positon of the shape to traverse.
init(ISBounds, IntegerIndexSpaceID) - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
 
init() - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Initialize this BDISBoundsIterator
init() - Method in class edu.unh.sdb.datasource.CellBlockIterator
Initialize this CellBlockIterator
init() - Method in class edu.unh.sdb.datasource.CellIterator
Initialize this CellIterator object
init() - Method in class edu.unh.sdb.datasource.DSPartitionedStencilIterator
Perform any necessary initialization, and set the iterator value to the first value in the iteration.
init() - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
Perform any necessary initialization, and set the iterator value to the first value in the iteration.
init(ISBounds) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
this is a help function for constructor, which is to set the Geometric bounds and initial positon of the shape to traverse.
init(ISBounds, IntegerIndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
 
init() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Initialize this ISBoundsIterator
init() - Method in class edu.unh.sdb.datasource.ISIterator
Initilize this ISiterator
init(String, int) - Static method in class edu.unh.sdb.datasource.Log
Initialize the log by specifying a filename (or null), and also a logging policy.
init() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Perform any necessary initialization, and set the iterator value to the first value in the iteration.
init() - Method in class edu.unh.sdb.datasource.RandomBlockIterator
initialize the iterator, read data values from the source into the iteration block.
init() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
init() - Method in class edu.unh.sdb.datasource.RayCellIterator
initialize the itertor move to the first cell block which intersects with the ray, set default axisordering as {2,1,0}
init(AxisOrdering) - Method in class edu.unh.sdb.datasource.RayCellIterator
initialize the itertor move to the first cell block which intersects with the ray
init() - Method in class edu.unh.sdb.datasource.RayIterator
 
init() - Method in class edu.unh.sdb.datasource.RemoteBFDS
 
init() - Method in class edu.unh.sdb.datasource.Slice
Initialize the slice by allocating memory for the data to be read, seting the default transfer function and performing other initialisations This initialisation can be done once per iteration.
init() - Method in class edu.unh.sdb.datasource.SliceIterator
 
init() - Method in class edu.unh.sdb.datasource.URCellBlockIterator
Initialize this URCellBlockIterator
init() - Method in class edu.unh.sdb.datasource.URCellIterator
Initialize this URCellIterator object
init() - Method in class edu.unh.sdb.lattice.GBoundsGapIterator
Initialize this GBoundsGapIterator
init() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Initialize this GBoundsIterator so that its value is set to the first GBounds in the iteration.
init() - Method in class edu.unh.sdb.lattice.GIterator
Initilize this ISiterator
init() - Method in class edu.unh.sdb.lattice.TriangleCellIterator
 
initialize() - Method in class edu.unh.sdb.datasource.SparseDataSource
 
initializeBuffers(int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Initialize buffers for i/o
initializeComponents(ComponentInfo[]) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
initialize component-related members that are not initialized by super
initializeComponents(ComponentInfo[]) - Method in class edu.unh.sdb.datasource.BlockedDataSource
Initialize the component related information on construction
initializeComponents(ComponentInfo[]) - Method in class edu.unh.sdb.datasource.CompositeDataSource
 
initializeComponents(ComponentInfo[]) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
overrides parent abstract definition.
inMemory - Variable in class edu.unh.sdb.lattice.FileCellGroup
 
inMemory() - Method in class edu.unh.sdb.lattice.FileCellGroup
 
inPartitioningBounds(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Return true if the argument represents a partition coordinate that is within the bounds of the stencil partitioning.
inPartitioningBounds(int[]) - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Return true if the argument represents a partition coordinate that is within the bounds of the stencil partitioning.
inputFileName - Variable in class edu.unh.sdb.common.XMLReader
the file/url to be parsed and processed
insert(UserType) - Method in class edu.unh.sdb.common.TypeTable
Adds a user defined type to the typetable.
insert(int, int) - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup.AList
 
inside(Point) - Method in class edu.unh.sdb.lattice.TriangleCell
Returns true if the Point p is inside the TriangleCell, false otherwise.
inside(Point, float[], int) - Static method in class edu.unh.sdb.lattice.TriangleCell
Returns true if the Point p is inside the TriangleCell, false otherwise.
inside(Point, int[], float[], int) - Static method in class edu.unh.sdb.lattice.TriangleCell
Returns true if the Point p is inside the TriangleCell, false otherwise.
inStencil - Variable in class edu.unh.sdb.datasource.DSArrayStencil
 
inStencil - Variable in class edu.unh.sdb.datasource.DSBlockStencil
 
Int - Static variable in class edu.unh.sdb.common.StorageType
 
IntDatum - Class in edu.unh.sdb.common
Represent multiple data values for a single point.
IntDatum(int) - Constructor for class edu.unh.sdb.common.IntDatum
Creates a null datum with the specified number of values.
IntDatum(int[]) - Constructor for class edu.unh.sdb.common.IntDatum
Creates a datum with attributes containing the argument values.
IntDatum(int[], int, int) - Constructor for class edu.unh.sdb.common.IntDatum
Deprecated.
Not really; just looking for usage because of changed semantics (01/05)
IntDatum(IntDatum) - Constructor for class edu.unh.sdb.common.IntDatum
Copy Constructor creates a copy of the argument datum.
IntDatum(Datum) - Constructor for class edu.unh.sdb.common.IntDatum
Copy Constructor creates a copy of the argument datum.
IntDatum(IntDatum[]) - Constructor for class edu.unh.sdb.common.IntDatum
This constructor creates a single IntDatum from an array of datums.
IntegerIndexSpaceID - Class in edu.unh.sdb.datasource
This class implements the IndexSpaceID class using an array of integers.
IntegerIndexSpaceID(int) - Constructor for class edu.unh.sdb.datasource.IntegerIndexSpaceID
Constructs a one dimensional IntegerIndexSpaceID with axis value set to the argument.
IntegerIndexSpaceID(int, int) - Constructor for class edu.unh.sdb.datasource.IntegerIndexSpaceID
Constructs a two dimensional IntegerIndexSpaceID with axis values set to the given values.
IntegerIndexSpaceID(int, int, int) - Constructor for class edu.unh.sdb.datasource.IntegerIndexSpaceID
Constructs a three dimensional IntegerIndexSpaceID with axis values set to the given values.
IntegerIndexSpaceID(int[]) - Constructor for class edu.unh.sdb.datasource.IntegerIndexSpaceID
Constructs a IntegerIndexSpaceID with dimensionality matching the length of the parameter array.
IntegerIndexSpaceID(IndexSpaceID, int) - Constructor for class edu.unh.sdb.datasource.IntegerIndexSpaceID
Constructs an IntegerIndexSpaceID with dimensionality matching id and all values set to value
IntegerIndexSpaceID(IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.IntegerIndexSpaceID
Constructs an IntegerIndexSpaceID from the contents of the IndexSpaceID argument.
IntegerIndexSpaceID(IntegerIndexSpaceID) - Constructor for class edu.unh.sdb.datasource.IntegerIndexSpaceID
Constructs an IntegerIndexSpaceID from the contents of the IntegerIndexSpaceID argument.
InternalFaultError - Class in edu.unh.sdb.common
Used whenever something happens that should be impossible occurrs.
InternalFaultError(int, String) - Constructor for class edu.unh.sdb.common.InternalFaultError
Create an error with the specified error level and message.
InternalFaultException - Exception in edu.unh.sdb.common
Thrown whenever something happens that should be impossible occurrs.
interpolateValues() - Method in class edu.unh.sdb.datasource.RayCellIterator
return interpolated values of all the attribute, stored in a array
intersection(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Returns the intersecton of this object with the ISBounds argument.
intersects(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
If the intersection of this with the argument is non-empty, the method returns true, and false otherwise.
intersects(Cell) - Method in class edu.unh.sdb.lattice.ArrayCell
determine if the argument Cell intersects with this Cell.
intersects(Cell) - Method in class edu.unh.sdb.lattice.Cell
 
intersects(GBounds) - Method in class edu.unh.sdb.lattice.GBounds
Updates this object to be the intersecton of itself with the GBounds argument.
intersects(Cell) - Method in class edu.unh.sdb.lattice.TriangleCell
 
intersects(GBounds) - Method in class edu.unh.sdb.lattice.TriangleCell
 
intersects(GBounds, int[], float[], int) - Static method in class edu.unh.sdb.lattice.TriangleCell
 
intersectWith(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Updates this ISBounds to the intersection of itself with the argument.
intToTypeString(int) - Static method in class edu.unh.sdb.common.StorageType
returns a String of the name of the type indicated by the argument.
IntValues - Class in edu.unh.sdb.common
IntValues is Values that store ints in a 1 D float array
IntValues() - Constructor for class edu.unh.sdb.common.IntValues
construct a IntValues with no data
IntValues(int[]) - Constructor for class edu.unh.sdb.common.IntValues
construct a IntValues for a given int array
IntValues(int) - Constructor for class edu.unh.sdb.common.IntValues
construct a IntValues for a given int array with the given number of ints.
intValues() - Method in class edu.unh.sdb.common.IntValues
Deprecated.
Use getDataReference()
invalidTypeCode - Static variable in class edu.unh.sdb.common.TypeTable
Returned by insert when an error occurs.
ip - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
ip - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
ip - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
ipStr - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
ipStr - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
isActivated - Variable in class edu.unh.sdb.datasource.DataSource
 
isActivated() - Method in class edu.unh.sdb.datasource.DataSource
Returns true if the datasource is activated, false otherwise.
isBacktoFront() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
isBigEndian() - Method in class edu.unh.sdb.datasource.FDLDescriptor
 
isBigEndian() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Returns true if the binary file is big-endian format or little endian
ISBounds - Class in edu.unh.sdb.datasource
The ISBounds class is meant to represent hypercubic subregions in an n-dimensional index space.
ISBounds(IndexSpaceID, IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.ISBounds
This constructor takes two corner points (SpaceIDs) that define a hypercube of arbitrary dimensionality.
ISBounds(IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.ISBounds
This constructor takes a single IndexSpaceID that defines the dimensions of a hypercube with lower coordinates at the origin.
ISBounds(int[]) - Constructor for class edu.unh.sdb.datasource.ISBounds
This constructor takes a single integer array that defines the dimensions of a hypercube with lower coordinates at the origin.
ISBounds(int[], int[]) - Constructor for class edu.unh.sdb.datasource.ISBounds
This constructor takes two corner points expressed as int arrays that define a hypercube of arbitrary dimensionality.
ISBounds(ISBounds) - Constructor for class edu.unh.sdb.datasource.ISBounds
Construct a copy of the argument bounds.
ISBounds(int) - Constructor for class edu.unh.sdb.datasource.ISBounds
This constructor just allocates space for the lower and upper arrays.
ISBounds(int, int[]) - Constructor for class edu.unh.sdb.datasource.ISBounds
This constructor allocates an ISBounds of the dimensionality defined by the first argument.
isBounds - Variable in class edu.unh.sdb.datasource.XDDLReader
 
ISBoundsIterator - Class in edu.unh.sdb.datasource
The ISBoundsIterator class traverses the specified IndexSpace with the specified shape and the specified steps.
ISBoundsIterator(ISBounds, int[], int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct an ISBoundsIterator that will traverse the given space with an an ISBounds of the given shape (dimensions).
ISBoundsIterator(ISBounds, int[], int[]) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct a bounds iterator with default AxisOrdering.
ISBoundsIterator(ISBounds, int[]) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct a bounds iterator with no gaps and default AxisOrdering.
ISBoundsIterator(ISBounds, ISBounds) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct a bounds iterator with no gaps and default AxisOrdering.
ISBoundsIterator(ISBounds, int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct a bounds iterator with no gaps.
ISBoundsIterator(ISBounds, ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct a bounds iterator with no gaps.
ISBoundsIterator(ISBounds, IntegerIndexSpaceID, int[], int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct an ISBoundsIterator that will traverse the given space with an an ISBounds of the given shape (dimensions).
ISBoundsIterator(ISBounds, IntegerIndexSpaceID, int[]) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct a bounds iterator with specified anchor position, no gaps and default axis axisOrdering.
ISBoundsIterator(ISBounds, IntegerIndexSpaceID, int[], AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct a bounds iterator with specified anchor position and no gaps.
ISBoundsIterator(ISBounds, IntegerIndexSpaceID, int[], int[]) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
Construct a bounds iterator with specified anchor position and default axis axisOrdering.
ISBoundsIterator(int) - Constructor for class edu.unh.sdb.datasource.ISBoundsIterator
 
isCellGeometry - Variable in class edu.unh.sdb.lattice.Geometry
 
isCellGeometry() - Method in class edu.unh.sdb.lattice.Geometry
returns true is this geometry is a cell geometry, false otherwise.
isCellLattice - Variable in class edu.unh.sdb.lattice.Lattice
 
isChunkedFileFormat() - Method in class edu.unh.sdb.datasource.FDLDescriptor
 
isDim(int) - Method in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
isDone - Variable in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator.IOThread
 
isDone - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache.SliceCacheIOThread
 
isDSNameUsed(String) - Method in class edu.unh.sdb.mdb.DBIF
 
isFirstBigger(byte[], int, byte[], int) - Method in class edu.unh.sdb.datasource.TransferFunction
 
isFullShape() - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Return true if the current position defines a bounds that is the full extent of the shape specifed for the Iterator.
isFullShape() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return true if the current position defines a bounds that is the full extent of the shape specified for the Iterator.
isIdentityMapper() - Method in class edu.unh.sdb.common.FieldIDMapper
Returns true if it is an identity FieldIDMapper.
isIdentityMapper() - Method in class edu.unh.sdb.datasource.ISIDMapper
Return true if this ISIDMapper is an identity mapper
ISIDMap - Variable in class edu.unh.sdb.datasource.ComponentInfo
 
ISIDMapper - Class in edu.unh.sdb.datasource
This class is used for mapping IndexSpaceIDs and ISBounds to/from ISBounds defined within component and composite spaces.
ISIDMapper(ISBounds, ISBounds) - Constructor for class edu.unh.sdb.datasource.ISIDMapper
Create an ISIDMapper.
ISIDMapper(ISBounds) - Constructor for class edu.unh.sdb.datasource.ISIDMapper
Create an ISIDMapper which does identity mapping.
ISIterator - Class in edu.unh.sdb.datasource
Child class of IndexSpaceID.
ISIterator(ISBounds) - Constructor for class edu.unh.sdb.datasource.ISIterator
Constructor taking an ISBounds, which specifies the IndexSpace
ISIterator(ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ISIterator
Constructor taking an ISBounds, which specifies the IndexSpace, and the AxisOrdering which specifies the axis incrementation order
ISIterator(ISBounds, int[]) - Constructor for class edu.unh.sdb.datasource.ISIterator
Constructor taking an ISBounds, which specifies the IndexSpace and the steps array allowing ISIterator increment step other than 1
ISIterator(ISBounds, AxisOrdering, int[]) - Constructor for class edu.unh.sdb.datasource.ISIterator
Constructor taking an ISBounds, AxisOrdering and steps array
isNull(int) - Method in class edu.unh.sdb.common.DoubleDatum
Returns true if the field specified by the argument is null, false otherwise.
isNull(int) - Method in class edu.unh.sdb.common.FloatDatum
Returns true if the field specified by the argument is null, false otherwise.
isOptimizedBlockSizeAdaptive() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
isOptimizedBlockSizeSlice() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
isOptimizedBlockTable() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
isOwner - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
ISPartitioning - Class in edu.unh.sdb.datasource
An ISPartitioning provides a mapping between an N-Dimensional index space and an integer partitioning Space of the same dimensionality.
ISPartitioning(ISBounds, ISBounds) - Constructor for class edu.unh.sdb.datasource.ISPartitioning
Create an ISPartitioning from a Bounds describing the partitioning and a Bounds describing the data space.
ISPartitioning(IndexSpaceID, ISBounds) - Constructor for class edu.unh.sdb.datasource.ISPartitioning
The first argument specifies the shape of each partition, not the dimensions of the partitioning space.
ISPartitioning(int[], ISBounds) - Constructor for class edu.unh.sdb.datasource.ISPartitioning
Create an ISPartitioning
isRegular(ComponentInfo[]) - Static method in class edu.unh.sdb.datasource.BlockManager
Return true if the data is regular data, i.e.
isSimpleStorageType(int) - Static method in class edu.unh.sdb.common.StorageType
Returns true if the argument is a valid StorageType value, except for StorageType.Record.
isSlice(IndexSpaceID, int) - Method in class edu.unh.sdb.datasource.ISBounds
Returns true if the argument IndexSpaceId represents the dimensions of a slice of this ISBounds of arbitrary thickness in the specified axis.
isSparse() - Method in class edu.unh.sdb.datasource.FDLDescriptor
 
isStorageType(int) - Static method in class edu.unh.sdb.common.StorageType
Returns true if the argument is a valid StorageType value, false otherwise.
isUserType() - Method in class edu.unh.sdb.common.AttributeDescriptor
Returns true if this AttributeDescriptor has a user defined type, false otherwise.
isUserType(int) - Method in class edu.unh.sdb.common.RecordDescriptor
Return true if the attribute at the specified position is a User defined type.
isWindowOpen() - Method in class edu.unh.sdb.datasource.RandomBlockIterator
return if the enumeration window is open or closed
iter - Variable in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator.IOThread
 
iter - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator.IOThread
 
iterator() - Method in class edu.unh.sdb.common.Metadata
Returns an Iterator over all the properties names.
iterator() - Method in class edu.unh.sdb.common.MetadataCollection
Returns an iterator over the Metadata objects in this collection
iteratorOrdering - Variable in class edu.unh.sdb.datasource.ThreadedBlockCacheDataSource
 
iterCopy - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 

K

KDNode - Class in edu.unh.sdb.datasource
 
KDNode(ISBounds) - Constructor for class edu.unh.sdb.datasource.KDNode
Constructor takes a single ISbounds
KDNode(ISBounds, CellIndexable) - Constructor for class edu.unh.sdb.datasource.KDNode
Constructor takes a ISbounds and a CellIndexable
KDNode(KDNode) - Constructor for class edu.unh.sdb.datasource.KDNode
Copy constructor
keyElement - Variable in class edu.unh.sdb.common.XMLReader
the key element to be processed

L

L_BAD_FILE_FORMAT - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_BOX_NOT_FOUND - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_FILE_CLOSE_ERROR - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_INVALID_COMPONENTS - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_INVALID_DATA - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_INVALID_DIMENSIONS - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_LEVEL_NOT_FOUND - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_NUM_LEVELS_NOT_FOUND - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_PROB_DOMAIN_NOT_FOUND - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_REF_RATIO_NOT_FOUND - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
L_TIMESTEP_NOT_FOUND - Static variable in class edu.unh.sdb.datasource.ChomboErrors
 
lastActiveOffset - Variable in class edu.unh.sdb.datasource.DSArrayStencil
 
lastActiveOffset - Variable in class edu.unh.sdb.datasource.DSBlockStencil
 
lastBlockNumber - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
lastChildId - Variable in class edu.unh.sdb.datasource.ARRSInternalNode
 
lastIndex - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
lastIndex - Variable in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroupGrid
 
lastIndexRequested - Variable in class edu.unh.sdb.datasource.DSArrayStencil
 
lastIndexRequested - Variable in class edu.unh.sdb.datasource.DSBlockStencil
 
lastX() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
lastY() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
Lattice - Class in edu.unh.sdb.lattice
 
Lattice(String, Topology, Geometry, Approximator) - Constructor for class edu.unh.sdb.lattice.Lattice
 
LatticeBuilder - Class in edu.unh.sdb.lattice
Manufactures Logical Lattice objects Hold relevant data and validates before instantiating the appropriate Lattice objects
LatticeBuilder(String) - Constructor for class edu.unh.sdb.lattice.LatticeBuilder
Default Constructor
LatticeCollection - Class in edu.unh.sdb.lattice
The LatticeCollection class provides for a list of Lattices with customary list functionality.
LatticeCollection() - Constructor for class edu.unh.sdb.lattice.LatticeCollection
default constructor
latticeList - Variable in class edu.unh.sdb.lattice.LatticeBuilder
 
lattices - Variable in class edu.unh.sdb.lattice.MRLattice
 
lbounds - Variable in class edu.unh.sdb.datasource.ISBoundsIterator
 
leastSignificantAxis - Variable in class edu.unh.sdb.datasource.BasicBlock
 
leastSignificantAxis - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
lessThanOrEqual(IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
A helper function that returns true if all the coordinates of this id are less than or equal to the corresponding coordinates of the parameter id.
lessThanOrEqual(Point) - Method in class edu.unh.sdb.lattice.Point
A helper function that returns true if all the coordinates of this id are less than or equal to the corresponding coordinates of the parameter id.
level - Variable in class edu.unh.sdb.lattice.MRLattice
 
LinearTriangleCellApproximator - Class in edu.unh.sdb.lattice
 
LinearTriangleCellApproximator() - Constructor for class edu.unh.sdb.lattice.LinearTriangleCellApproximator
 
LITTLE_ENDIAN - Static variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
load(Reader) - Method in class edu.unh.sdb.common.Metadata
 
load(InputStream) - Method in class edu.unh.sdb.common.Metadata
 
load(String) - Method in class edu.unh.sdb.common.Metadata
Creates a StringReader and uses the load(Reader) method.
load(int) - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
 
load(int) - Method in class edu.unh.sdb.datasource.ThreadedSliceCache
 
loadChunk(long, Values) - Method in class edu.unh.sdb.datasource.ChunkedDataSource
Given a chunk index, read the data from the chunk into a Values object
loadData() - Method in class edu.unh.sdb.datasource.ARRSCopyDataBlock
loadData() - responsibility of the child class to implement code to load the true DataBlock object.
loadData() - Method in class edu.unh.sdb.datasource.DataBlockProxy
loadData() - responsibility of the child class to implement code to load the true DataBlock object.
loadDS(String) - Method in class edu.unh.sdb.common.WorkSpace
add the DataSource specified by the name from database to workspace
loadDS(String, WorkSpace) - Method in class edu.unh.sdb.mdb.DBIF
read one DataSource from database to WorkSpace
loadFully() - Method in class edu.unh.sdb.common.WorkSpace
add all the DataSources' in database to workspace
loadPartition(int, Values) - Method in class edu.unh.sdb.datasource.SparseDataSource
Given a partition index, read the data from the partition into a Values object.
loadWorkSpace(WorkSpace) - Method in class edu.unh.sdb.mdb.DBIF
read meta data from database to WorkSpace
localhost - Variable in class edu.unh.sdb.mdb.DBIF
 
locateAttribute(int) - Method in class edu.unh.sdb.datasource.CompositeBlock
given a fieldID (fieldID of this compositeBlock, return a array with length of two, first element of the array represents the basicBlock number, and second element represents the corresponding fieldID in the basicBlock.
Log - Class in edu.unh.sdb.datasource
This class provides basic logging functionality for errors and debugging.
Log() - Constructor for class edu.unh.sdb.datasource.Log
 
log(String) - Static method in class edu.unh.sdb.datasource.Log
Write a message to the log.
log(String) - Method in class edu.unh.sdb.datasource.Slice
 
logError(SDBException) - Method in class edu.unh.sdb.common.SDBError
Log the error message.
LogToFile - Static variable in class edu.unh.sdb.datasource.Log
 
LogToStdErr - Static variable in class edu.unh.sdb.datasource.Log
 
Long - Static variable in class edu.unh.sdb.common.StorageType
 
longVolume() - Method in class edu.unh.sdb.datasource.DataCollection
Returns a long with the number of elements in this datasource index space.
longVolume() - Method in class edu.unh.sdb.datasource.ISBounds
Return the total volume of the ISBounds as a long.
lookup(BasicBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.BlockListCache
lookup the cached blocks to see if the the query block is already in cache.
lookup(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.BlockListCache
 
lookup(int) - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup.AList
 
lostPacketArray - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
lostPacketCounter - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
lower - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
lower - Variable in class edu.unh.sdb.datasource.ISBounds
 
lower - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
lower - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
lower - Variable in class edu.unh.sdb.lattice.GBounds
 
lowerAxes - Variable in class edu.unh.sdb.datasource.XDDLReader
interim lower bounds specifications
lowerPartitioningArray - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
lowerPartitioningArray - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
lowerSpaceArray - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
lowerSpaceArray - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
LRUCache - Class in edu.unh.sdb.datasource
 
LRUCacheDataSource - Class in edu.unh.sdb.datasource
The LRUCacheDataSource provides cache service for an underlying datasource.
LRUCacheDataSource(String, ChunkedDataSource, int) - Constructor for class edu.unh.sdb.datasource.LRUCacheDataSource
Create a LRUCacheDataSource with a single CacheBlock connected to the ChunkedDataSource argument.
LRUCacheDataSource(String, DataSource, IndexSpaceID, int) - Constructor for class edu.unh.sdb.datasource.LRUCacheDataSource
Create a LRUCacheDataSource with a single CacheBlock connected to the DataSource argument.

M

main(String[]) - Static method in class edu.unh.sdb.common.AttributeDescriptor
For debugging and testing.
main(String[]) - Static method in class edu.unh.sdb.common.FieldIDMapper
 
main(String[]) - Static method in class edu.unh.sdb.common.FloatDataArray
 
main(String[]) - Static method in class edu.unh.sdb.common.FloatValues
 
main(String[]) - Static method in class edu.unh.sdb.common.RecordDescriptor
 
main(String[]) - Static method in class edu.unh.sdb.common.StorageType
 
main(String[]) - Static method in class edu.unh.sdb.common.TypeTable
For testing and debugging.
main(String[]) - Static method in class edu.unh.sdb.common.Values
 
main(String[]) - Static method in class edu.unh.sdb.common.WorkSpaceManager
For debugging and testing.
main(String[]) - Static method in class edu.unh.sdb.common.XMLEntityResolver
 
main(String[]) - Static method in class edu.unh.sdb.datasource.ARBlock
 
main(String[]) - Static method in class edu.unh.sdb.datasource.AttributeJoinDataSource
AttributeJoinDataSource main test
main(String[]) - Static method in class edu.unh.sdb.datasource.AxisOrdering
 
main(String[]) - Static method in class edu.unh.sdb.datasource.BDISBoundsIterator
For debugging.
main(String[]) - Static method in class edu.unh.sdb.datasource.BinaryFileDataSource
 
main(String[]) - Static method in class edu.unh.sdb.datasource.BlockedDataSource
 
main(String[]) - Static method in class edu.unh.sdb.datasource.BlockListCache
 
main(String[]) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
main(String[]) - Static method in class edu.unh.sdb.datasource.ChunkedDataSource
 
main(String[]) - Static method in class edu.unh.sdb.datasource.CompositeDataSource
 
main(String[]) - Static method in class edu.unh.sdb.datasource.DataSource
---------------------- main ---------------------------------- // just a little code to test the code that tries to be smarter about // finding files.
main(String[]) - Static method in class edu.unh.sdb.datasource.DataSourceBuilder
 
main(String[]) - Static method in class edu.unh.sdb.datasource.DataSourceServer
 
main(String[]) - Static method in class edu.unh.sdb.datasource.DSArrayStencil
 
main(String[]) - Static method in class edu.unh.sdb.datasource.DSBlockStencil
 
main(String[]) - Static method in class edu.unh.sdb.datasource.DSListStencil
 
main(String[]) - Static method in class edu.unh.sdb.datasource.GraniteRemoteClient
GraniteRemoteClient main.
main(String[]) - Static method in class edu.unh.sdb.datasource.IndexSpaceID
 
main(String[]) - Static method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
 
main(String[]) - Static method in class edu.unh.sdb.datasource.ISBounds
For debugging.
main(String[]) - Static method in class edu.unh.sdb.datasource.ISBoundsIterator
For debugging.
main(String[]) - Static method in class edu.unh.sdb.datasource.ISIDMapper
For debugging.
main(String[]) - Static method in class edu.unh.sdb.datasource.ISIterator
 
main(String[]) - Static method in class edu.unh.sdb.datasource.LRUCache
 
main(String[]) - Static method in class edu.unh.sdb.datasource.LRUCacheDataSource
For debugging.
main(String[]) - Static method in class edu.unh.sdb.datasource.MRDataSource
 
main(String[]) - Static method in class edu.unh.sdb.datasource.MultiBlockCacheDataSource
For debugging.
main(String[]) - Static method in class edu.unh.sdb.datasource.PackedIndexSpaceID
 
main(String[]) - Static method in class edu.unh.sdb.datasource.PhysicalDataSource
 
main(String[]) - Static method in class edu.unh.sdb.datasource.RandomBlockIterator
 
main(String[]) - Static method in class edu.unh.sdb.datasource.RegularGridBlockManager
 
main(String[]) - Static method in class edu.unh.sdb.datasource.RegularISPartitioning
 
main(String[]) - Static method in class edu.unh.sdb.datasource.RegularPartitionISID
 
main(String[]) - Static method in class edu.unh.sdb.datasource.RemoteBFDS
 
main(String[]) - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
RemoteUDPClient main.
main(String[]) - Static method in class edu.unh.sdb.datasource.RemoteUDTClient
RemoteUDTClient main.
main(String[]) - Static method in class edu.unh.sdb.datasource.SparseDataSource
 
main(String[]) - Static method in class edu.unh.sdb.datasource.TextFileDataSource
 
main(String[]) - Static method in class edu.unh.sdb.datasource.ThreadedBlockCacheDataSource
For debugging.
main(String[]) - Static method in class edu.unh.sdb.datasource.TimeSeries
 
main(String[]) - Static method in class edu.unh.sdb.datasource.UniBlockCacheDataSource
For debugging.
main(String[]) - Static method in class edu.unh.sdb.datasource.VRIndexable
 
main(String[]) - Static method in class edu.unh.sdb.datasource.XDDLReader
main method used for testing the class
main(String[]) - Static method in class edu.unh.sdb.datasource.XFDLReader
main method used for testing the class
main(String[]) - Static method in class edu.unh.sdb.datasource.XTDLReader
main method used for testing the class
main(String[]) - Static method in class edu.unh.sdb.lattice.ArrayApproximator
 
main(String[]) - Static method in class edu.unh.sdb.lattice.GBounds
For debugging.
main(String[]) - Static method in class edu.unh.sdb.lattice.GBoundsGapIterator
For debugging.
main(String[]) - Static method in class edu.unh.sdb.lattice.GBoundsIterator
For debugging.
main(String[]) - Static method in class edu.unh.sdb.lattice.GIterator
 
main(String) - Static method in class edu.unh.sdb.lattice.RegularPartitioning
 
main(String[]) - Static method in class edu.unh.sdb.lattice.TriangleCell
 
main(String[]) - Static method in class edu.unh.sdb.lattice.XLDLReader
main method used for testing the class
mainCacheContext - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
mainScratchID2D - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
mainSpaceLocation - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
makeAxisWeights(ISBounds) - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns an array of axis weights corresponding to the axisOrdering and bounds parameter.
makeAxisWeights(IndexSpaceID) - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns an array of axis weights corresponding to the axisOrdering and thedimensions parameter.
makeAxisWeights(int[]) - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns an array of axis weights corresponding to the axisOrdering and the dimensions parameter.
makeAxisWeights(long[]) - Method in class edu.unh.sdb.datasource.AxisOrdering
Returns an array of axis weights corresponding to the axisOrdering and the dimensions parameter.
makeBaseBounds(int[]) - Method in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
Return an ISBounds representing the base bounds for this AR Tree
makeBestBuffer(ISBounds, ISBounds, int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
this method computes the best i/o buffer size.
makeByteBuffer(byte[], DSPartitionedStencil) - Method in class edu.unh.sdb.datasource.ChomboDataSource
Creates a new byte buffer and returns it, based on the start and maximum levels specified, and the number of query boxes requested.
makeCellGroups() - Method in class edu.unh.sdb.lattice.CellGroupGrid
 
makeCellGroups() - Method in class edu.unh.sdb.lattice.FileSplitterCellGroupGrid
 
makeCellGroups() - Method in class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
makeCellGroups() - Method in class edu.unh.sdb.lattice.PartitionedSplitCellGroupGrid
 
makeCellGroups() - Method in class edu.unh.sdb.lattice.SplitCellGroupGrid
 
makeCellGroups() - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroupGrid
 
makeChildrenFloat(Node) - Static method in class edu.unh.sdb.common.XMLReader
converts a node from the XML parsed tree into a Float object
makeChildrenInteger(Node) - Static method in class edu.unh.sdb.common.XMLReader
processes a child node from the XML parsed tree int an Integer object
makeChildrenText(Node) - Static method in class edu.unh.sdb.common.XMLReader
converts a node from the XML parsed tree into a String
makeChildrenText1(Node, StringBuffer) - Static method in class edu.unh.sdb.common.XMLReader
recursive method to support makeChildrenText(Node node) method
makeComponentBounds() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Converts upper and lower axes arrays into an ISBounds object
makeComponentFieldIDMapper() - Method in class edu.unh.sdb.datasource.AJDataSourceBuilder
returns a FieldIDMapper for the current component
makeComponentFieldIDMapper() - Method in class edu.unh.sdb.datasource.BlockedDataSourceBuilder
returns a FieldIDMapper for the current component
makeComponentFieldIDMapper() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
returns a FieldIDMapper for the current component
makeComponentInfos() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
instantiate a list of ComponentInfos to be used to create the datasource
makeDataSource() - Method in class edu.unh.sdb.datasource.AJDataSourceBuilder
instantiate an actual datasource object
makeDataSource() - Method in class edu.unh.sdb.datasource.BlockedDataSourceBuilder
instantiates an actual datasource
makeDataSource() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
instantiates an actual datasource
makeDataSource() - Method in class edu.unh.sdb.datasource.VRDataSourceBuilder
instantiate an actual datasource object
makeDatum() - Method in class edu.unh.sdb.lattice.Point
Returns a new datum that contains the point axes as values.
makeISIDMapper(int) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
returns an ISIDMapper for a component
makeLattice() - Method in class edu.unh.sdb.lattice.LatticeBuilder
instantiates an actual lattice
makeOffsets() - Method in class edu.unh.sdb.common.RecordDescriptor
Allocate and fill in the array of byte offsets.
makeRelativeTo(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Translate this ISBounds in space so it is expressed in the local coordinate system whose origin is at the IndexSpaceId passed as an argument.
makeRelativeTo(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Translate this ISBounds in space so it is expressed in the local coordinate system whose origin is at the IndexSpaceId passed as an argument.
makeStorageTypeInfo() - Method in class edu.unh.sdb.common.RecordDescriptor
Initialize arrays used for quick access to type information.
makeUserType() - Method in class edu.unh.sdb.common.RangedTypeBuilder
Returns a Type object that has been instantiated as a RangedUserType object.
makeUserType() - Method in class edu.unh.sdb.common.RecordDescriptorBuilder
Returns a UserType object that has been instantiated as a RangedUserType object.
makeUserType() - Method in class edu.unh.sdb.common.UserTypeBuilder
Returns a Type object that has been instantiated as a UserType object.
map(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISPartitioning
Map a position in the data space to the partition that contains it.
map(ISBounds) - Method in class edu.unh.sdb.datasource.ISPartitioning
Map a bounds in the data space to the bounds in the partitioning space that contains the data bounds.
map(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Map the id onto the partitioning.
map(IndexSpaceID, IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Map the first argument onto the partitioning, placing the result in the second argument.
map(ISBounds) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Map the bounds onto the partitioning, returning a new ISBounds.
map(Point) - Method in class edu.unh.sdb.lattice.Geometry
 
map(Point) - Method in class edu.unh.sdb.lattice.Partitioning
 
map(GBounds) - Method in class edu.unh.sdb.lattice.Partitioning
 
map(Point) - Method in class edu.unh.sdb.lattice.RegularCellPartitioning
Map the point onto the partitioning If p falls on a partition boundary, we choose the partition with the lower index.
map(GBounds) - Method in class edu.unh.sdb.lattice.RegularCellPartitioning
 
map(Point) - Method in class edu.unh.sdb.lattice.RegularPartitioning
Map the point onto the partitioning If p falls on a partition boundary, we choose the partition with the lower index.
map(GBounds) - Method in class edu.unh.sdb.lattice.RegularPartitioning
 
mapHigh(Point) - Method in class edu.unh.sdb.lattice.RegularCellPartitioning
Map the point onto the grid.
mapHigh(Point) - Method in class edu.unh.sdb.lattice.RegularPartitioning
Map the point onto the grid.
mapInfo - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
mapLow(Point) - Method in class edu.unh.sdb.lattice.RegularCellPartitioning
Map the point onto the partitioning.
mapLow(Point) - Method in class edu.unh.sdb.lattice.RegularPartitioning
From RegularCellPartitioning.java
mapper - Variable in class edu.unh.sdb.datasource.VRIndexable
 
mappingStrings - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
mapToCellGroup(IndexSpaceID) - Method in class edu.unh.sdb.lattice.CellGroupGrid
 
mapToSpace(ISBounds) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
map a partition ISBounds to space ISBounds
mapToSpace(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
map partition ID to space ISBounds
mapToSpace() - Method in class edu.unh.sdb.datasource.RegularPartitionISID
Map this RegularPartitionISID back to an ISID in the original space
mapToSpaceParts(ISBounds) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Map a bounds in space to the set of spatial bounds that represent the pieces of the bounds that are each only in exactly one partition.
massage(float[]) - Static method in class edu.unh.sdb.datasource.CacheMaker
This method finds the smallest magnitude non-zero coordinate and divides the other coordinates by this value.
maxBufferSize - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
maxCacheSize - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
maxCacheSizeDefault - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
maxChildren() - Method in class edu.unh.sdb.datasource.ARRSInternalNode
return maximum allowed number of children, determined by child class
maxChildren() - Method in class edu.unh.sdb.datasource.KDNode
return maximum number child nodes (always 2 for kd-tree)
maxChildren - Variable in class edu.unh.sdb.datasource.NTreeNode
 
maxChildren() - Method in class edu.unh.sdb.datasource.NTreeNode
return # allowed children
maxGapSize - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
merge(Metadata) - Method in class edu.unh.sdb.common.Metadata
adds all the key/values in the argument to this Metadata object.
merge(MetadataCollection) - Method in class edu.unh.sdb.common.MetadataCollection
Calls the 'update' method for each Metadata object in the given MetadataCollection.
merge(DataSourceCollection) - Method in class edu.unh.sdb.datasource.DataSourceCollection
if name exists in both collections, the new one is discarded
merge(LatticeCollection) - Method in class edu.unh.sdb.lattice.LatticeCollection
if name exists in both collections, the new one is discarded
Metadata - Class in edu.unh.sdb.common
The Metadata class can be used to hold metadata information as {key, value} pairs, which are stored in a hashmap (an instance of the Properties class).
Metadata() - Constructor for class edu.unh.sdb.common.Metadata
Default constructor.
Metadata(String) - Constructor for class edu.unh.sdb.common.Metadata
Creates a new Metadata object with the given name.
Metadata(Metadata) - Constructor for class edu.unh.sdb.common.Metadata
creates this object as a copy of the argument.
MetaDataBaseError - Class in edu.unh.sdb.common
This error is created whenever there is a problem communicating with the MetaDataBase.
MetaDataBaseError(int, String) - Constructor for class edu.unh.sdb.common.MetaDataBaseError
Create an error with the specified error level and message.
MetaDataBaseException - Exception in edu.unh.sdb.common
If this exception is thrown, there is a problem communicating with the MetaDataBase.
MetadataCollection - Class in edu.unh.sdb.common
A MetaCollection is a HashMap of Metadata objects, where the name attribute of each Metadata object is the key and the Metadata object itself is the value.
MetadataCollection() - Constructor for class edu.unh.sdb.common.MetadataCollection
Constructs an empty MetadataCollection.
MetadataCollection(Metadata[]) - Constructor for class edu.unh.sdb.common.MetadataCollection
Constructs a MetadataCollection from an array of Metadata objects.
missedPacket - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
MixedDatum - Class in edu.unh.sdb.common
Represent multiple data values for a single point.
MixedDatum(RecordDescriptor) - Constructor for class edu.unh.sdb.common.MixedDatum
Creates a Datum based on a RecordDescriptor.
MixedDatum(int) - Constructor for class edu.unh.sdb.common.MixedDatum
Deprecated. 
MixedDatum(float[]) - Constructor for class edu.unh.sdb.common.MixedDatum
Deprecated. 
MixedDatum(RecordDescriptor, byte[], int) - Constructor for class edu.unh.sdb.common.MixedDatum
Creates a datum by copying a subset of values from an array.
MixedDatum(int[]) - Constructor for class edu.unh.sdb.common.MixedDatum
Deprecated. 
MixedDatum(MixedDatum) - Constructor for class edu.unh.sdb.common.MixedDatum
Copy Constructor creates a copy of the argument datum.
MixedDatum(Datum) - Constructor for class edu.unh.sdb.common.MixedDatum
Copy Constructor creates a copy of the argument datum.
MixedDatum(MixedDatum[]) - Constructor for class edu.unh.sdb.common.MixedDatum
This constructor creates a single MixedDatum from an array of datums.
MixedDatum(Datum[]) - Constructor for class edu.unh.sdb.common.MixedDatum
This constructor creates a single MixedDatum from an array of Datums.
MixedValues - Class in edu.unh.sdb.common
MixedValues stores attributes as byte sequences in a 1 D byte array
MixedValues() - Constructor for class edu.unh.sdb.common.MixedValues
construct a MixedValues with no data
MixedValues(RecordDescriptor) - Constructor for class edu.unh.sdb.common.MixedValues
construct a MixedValues with no data
MixedValues(RecordDescriptor, byte[]) - Constructor for class edu.unh.sdb.common.MixedValues
construct a MixedValues for a given byte array
MixedValues(RecordDescriptor, int) - Constructor for class edu.unh.sdb.common.MixedValues
construct a MixedValues, given the size of the byteArray
mod(IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Calculate pairwise mod of this IndexSpaceID with 'other' and store the result in 'this'.
move(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Translate the ISBounds object in space by the value of the parameter IndexSpaceID.
move(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Translate the ISBounds object in space by the coordinates in the integer array argument.
move(int, int) - Method in class edu.unh.sdb.datasource.ISBounds
Translate the ISBounds object in space along the specified axis by the specified distance.
move(Point) - Method in class edu.unh.sdb.lattice.GBounds
Translate the GBounds object in space by the value of the parameter Point.
move(float[]) - Method in class edu.unh.sdb.lattice.GBounds
Translate the GBounds object in space by the coordinates in the integer array argument.
moveCenterTo(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Translate the ISBounds object in space so that the center is moved to the coordinates specified in the integer array argument.
moveCenterTo(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Translate the ISBounds object in space so that the center is moved to the coordinates specified in the integer array argument.
moveTo(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Translate the ISBounds object in space so that the lower left corner is moved to the location specified by the parameter IndexSpaceID.
moveTo(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Translate the ISBounds object in space so that the lower left corner is moved to the coordinates specified int the integer array argument.
moveTo(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISIterator
Reposition the bounds of this iterator so that its lower bound is at the position specified by the argument.
moveTo(int[]) - Method in class edu.unh.sdb.datasource.ISIterator
Reposition the bounds of this iterator so that its lower bound is at the position specified by the argument.
moveTo(Point) - Method in class edu.unh.sdb.lattice.GBounds
Translate the GBounds object in space so that the lower left corner is moved to the location specified by the parameter Point.
moveTo(float[]) - Method in class edu.unh.sdb.lattice.GBounds
Translate the GBounds object in space so that the lower left corner is moved to the coordinates specified int the integer array argument.
moveToOrigin() - Method in class edu.unh.sdb.datasource.ISBounds
Translate this ISBounds in space so that the lower point is now at the origin.
moveToOrigin() - Method in class edu.unh.sdb.lattice.GBounds
Translate this GBounds in space so that the lower point is now at the origin.
MRDataSource - Class in edu.unh.sdb.datasource
MRDataSource Serves as an interface to a MultiResolution hierarchy of DataSources representing the same data at different resolution levels.
MRDataSource(String, FDLDescriptor) - Constructor for class edu.unh.sdb.datasource.MRDataSource
 
MRLattice - Class in edu.unh.sdb.lattice
 
MRLattice(String, String[], GBounds, Approximator, boolean) - Constructor for class edu.unh.sdb.lattice.MRLattice
 
MultiBlockCacheDataSource - Class in edu.unh.sdb.datasource
The MultiBlockCacheDataSource provides caching service using a MultiBlockCache.
MultiBlockCacheDataSource(String, DataSource, ISBounds, IndexSpaceID, IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.MultiBlockCacheDataSource
Creates a MultiBlockCacheDataSource that caches the specified DataSource.
MultiBlockCacheDataSource(String, DataSource, IndexSpaceID, IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.MultiBlockCacheDataSource
Creates a MultiBlockCacheDataSource that caches the specified DataSource.
multiply(IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Pairwise multiply this IndexSpaceID with 'other' and store the result in this.
MYSQL - Static variable in class edu.unh.sdb.mdb.DBIF
 
MySQLDBIF - Class in edu.unh.sdb.mdb
 
MySQLDBIF(URL) - Constructor for class edu.unh.sdb.mdb.MySQLDBIF
 
myUrl - Variable in class edu.unh.sdb.mdb.DBIF
 

N

name() - Method in class edu.unh.sdb.common.AttributeDescriptor
Return the name of the attribute as a string.
name(int) - Method in class edu.unh.sdb.common.RecordDescriptor
Return the name of a attribute at the specified position.
name(int) - Static method in class edu.unh.sdb.common.StorageType
returns a String of the name of the type indicated by the argument.
name - Variable in class edu.unh.sdb.common.Type
 
name - Variable in class edu.unh.sdb.datasource.DataSource
The name of this DataSource object.
name - Variable in class edu.unh.sdb.lattice.Lattice
 
nameExists(String) - Method in class edu.unh.sdb.datasource.DataSourceCollection
Returns true if DataSource named by String is in the list
nameExists(String) - Method in class edu.unh.sdb.datasource.XDDLReader
Returns true/false if the name exists in the datasource collection
nameExists(String) - Method in class edu.unh.sdb.lattice.LatticeCollection
Returns true if Lattice named by String is in the list
nameExists(String) - Method in class edu.unh.sdb.lattice.XLDLReader
Returns true/false if the name exists in the datasource collection
nameHash - Variable in class edu.unh.sdb.common.TypeTable
 
nameMapping - Variable in class edu.unh.sdb.datasource.DataSourceBuilder
the composite field names for mapping from component to composite
negate() - Method in class edu.unh.sdb.datasource.IndexSpaceID
Arithmetically negate this IndexSpaceID's axis values.
negate() - Method in class edu.unh.sdb.lattice.Point
Arithmetically negate this Point's axis values.
NeverThrow - Static variable in class edu.unh.sdb.common.SDBError
 
newBoundsAtOrigin(IndexSpaceID) - Static method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use createAtOrigin( isid )
next() - Method in interface edu.unh.sdb.common.SDBIterator
Advance the iterator by one step.
next() - Method in class edu.unh.sdb.datasource.ARBlock
Retrieve the next component block from this ARBlock
next() - Method in class edu.unh.sdb.datasource.ARRSCellBlockIterator
Moving the CellBlockIterator to the next position.
next() - Method in class edu.unh.sdb.datasource.ARRSCellIterator
Moving the ARRSCellIterator to the next position.
next() - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Moving the BDISBoundsIterator to the next position.
next() - Method in class edu.unh.sdb.datasource.CellBlockIterator
Moving the CellBlockIterator to the next position.
next() - Method in class edu.unh.sdb.datasource.CellIterator
Moving the CellIterator to the next position.
next() - Method in class edu.unh.sdb.datasource.DataSourceCollection
returns the next DataSource object or null DataSource object if no more exists
next() - Method in class edu.unh.sdb.datasource.DSPartitionedStencilIterator
Advance the iterator by one step.
next() - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
Advance the iterator by one step.
next() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Moving the ISBoundsIterator to the next position.
next() - Method in class edu.unh.sdb.datasource.ISIterator
Increment the ISIterator to the next position.
next() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Advance the iterator by one step.
next(double) - Method in class edu.unh.sdb.datasource.Plane
 
next() - Method in class edu.unh.sdb.datasource.RandomBlockIterator
move to next iteration step
next() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
next() - Method in class edu.unh.sdb.datasource.RayCellIterator
move the iterator to the next possiton, and get the data from the source
next() - Method in class edu.unh.sdb.datasource.RayIterator
 
next() - Method in class edu.unh.sdb.datasource.SliceIterator
 
next() - Method in class edu.unh.sdb.datasource.URCellBlockIterator
Moving the CellBlockIterator to the next position.
next() - Method in class edu.unh.sdb.datasource.URCellIterator
Moving the URCellIterator to the next position.
next() - Method in class edu.unh.sdb.lattice.GBoundsGapIterator
Moving the GBoundsGapIterator to the next position.
next() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Moving the GBoundsIterator to the next position.
next() - Method in class edu.unh.sdb.lattice.GIterator
Increment the GIterator to the next position.
next() - Method in class edu.unh.sdb.lattice.LatticeCollection
returns the next Lattice object or null Lattice object if no more exists
next() - Method in class edu.unh.sdb.lattice.TriangleCellIterator
 
nextBounds() - Method in class edu.unh.sdb.datasource.RandomBlockIterator
get ISBounds of next iteration step
nextBounds() - Method in class edu.unh.sdb.datasource.RayCellIterator
return true if iterator moves to next spacial postion.
nextCacheBlock(ISBounds) - Method in class edu.unh.sdb.datasource.UniBlockCacheDataSource
Read the data into the theCache which is referenced by the cache block Added by Baoqiang Yan on 11/30/2007
nextCommand() - Method in class edu.unh.sdb.ARRSTreeBuilder.ARCellParser
 
nextPowerOf2(int) - Static method in class edu.unh.sdb.datasource.SliceUtil
 
nextTypeNumber - Variable in class edu.unh.sdb.common.TypeTable
 
nodeId - Variable in class edu.unh.sdb.datasource.ARRSNode
 
nodeNum - Variable in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
normal - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
normalize() - Method in class edu.unh.sdb.datasource.Plane
 
normalize(int) - Method in class edu.unh.sdb.datasource.Plane
 
normalOnPitchRotation() - Method in class edu.unh.sdb.common.EulerAngles
Calculate the normal on the rotation circle determined when heading is constant and pitch varies.
normalSigns - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
NTreeNode - Class in edu.unh.sdb.datasource
 
NTreeNode(ISBounds) - Constructor for class edu.unh.sdb.datasource.NTreeNode
Constructor takes a single ISbounds
NTreeNode(ISBounds, CellIndexable) - Constructor for class edu.unh.sdb.datasource.NTreeNode
Constructor takes a ISbounds and a CellIndexable
NTreeNode(NTreeNode) - Constructor for class edu.unh.sdb.datasource.NTreeNode
Copy constructor
nullDatum - Variable in class edu.unh.sdb.lattice.Lattice
 
numAttributes - Variable in class edu.unh.sdb.datasource.DataCollection
This value is taken from this.recordDesc, but is duplicated here for speed.
numAttributes - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
numAttributes - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
number_packets - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
numberList - Variable in class edu.unh.sdb.common.TypeTable
 
numBlocks - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
numBorrowedCells - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
numBorrowedCells - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
numCacheBlocks - Variable in class edu.unh.sdb.datasource.BlockCache
 
numCacheBlocks - Variable in class edu.unh.sdb.datasource.LRUCacheDataSource
 
numCells - Variable in class edu.unh.sdb.lattice.CellGroup
 
numCells - Variable in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroupGrid
 
numChildren - Variable in class edu.unh.sdb.datasource.ARRSInternalNode
 
numFields - Variable in class edu.unh.sdb.datasource.DataSink
 
numOfChunks() - Method in class edu.unh.sdb.datasource.ChunkedDataSource
return number of chunks contained by the datasource
numOwnedCells - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
numOwnedCells - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
numSteps - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
numVertices - Variable in class edu.unh.sdb.lattice.Cell
 

O

ObliquePlaneIterator - Class in edu.unh.sdb.datasource
 
ObliquePlaneIterator(IndexSpaceID, IndexSpaceID, float[], int, DataSource) - Constructor for class edu.unh.sdb.datasource.ObliquePlaneIterator
Construct an ObliquePlaneIterator that represents data using a datablock with shape specified by the first argument.
ObliquePlaneIterator(IndexSpaceID, IndexSpaceID, float[], int, boolean, DataSource) - Constructor for class edu.unh.sdb.datasource.ObliquePlaneIterator
Construct an ObliquePlaneIterator that represents data using a datablock with shape specified by the first argument.
ObliquePlaneIterator.IOThread - Class in edu.unh.sdb.datasource
 
ObliquePlaneIteratorInterface - Interface in edu.unh.sdb.datasource
 
offset - Variable in class edu.unh.sdb.datasource.RegularPartitionISID
 
offsetISID - Variable in class edu.unh.sdb.datasource.RegularPartitionISID
 
old_server_subblock(byte[], ISBounds, int) - Method in class edu.unh.sdb.datasource.PointOrderBFDS
Starting at the position indicated by bytesOffset, fill the byte array with the the data corresponding to the given ISBounds.
OneDDataSink - Class in edu.unh.sdb.datasource
A 1D Datasink.
OneDDataSink(String, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.OneDDataSink
 
open() - Method in class edu.unh.sdb.datasource.DataSink
 
open(URL) - Static method in class edu.unh.sdb.mdb.DBIF
 
openDS(int) - Method in class edu.unh.sdb.datasource.MRDataSource
Swap datasources.
openWelcomeSocket() - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Open welcomeSocket for Control Information.
ORACLE - Static variable in class edu.unh.sdb.mdb.DBIF
 
OracleDBIF - Class in edu.unh.sdb.mdb
 
OracleDBIF(URL) - Constructor for class edu.unh.sdb.mdb.OracleDBIF
 
ordering - Variable in class edu.unh.sdb.common.DataArray
 
ordering - Variable in class edu.unh.sdb.datasource.AxisOrdering
 
ordering - Variable in class edu.unh.sdb.datasource.DataSink
 
ordering - Variable in class edu.unh.sdb.datasource.ISBoundsIterator
 
ordering - Variable in class edu.unh.sdb.datasource.RegularISPartitioning
 
ordering - Variable in class edu.unh.sdb.lattice.CellGroupGrid
 
orderPointsForSimpleClosedPath(Point2d[], Point3d[]) - Static method in class edu.unh.sdb.datasource.SliceUtil
Order the points to draw a simple closed path, from Algorithms in C++, Sedgewick, chapter 24.
origDS - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
OverlapBlockedDataSource - Class in edu.unh.sdb.datasource
OverlapBlockedDataSource does a spatial join on several blocks of DataSources into one DataSource
OverlapBlockedDataSource(String, ComponentInfo[]) - Constructor for class edu.unh.sdb.datasource.OverlapBlockedDataSource
Construct a OverlapBlockedDataSource from an array of ComponentInfo.
OverlapBlockManager - Class in edu.unh.sdb.datasource
 
OverlapBlockManager(ComponentInfo[]) - Constructor for class edu.unh.sdb.datasource.OverlapBlockManager
Construct a OverlapBlockManager from a array of ComponentInfo
ownedCellGrid - Variable in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
 
ownedCellGridFDLD - Variable in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
 
ownedCells - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
ownedTempVIndicesName - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
ownedTempVIndicesSink - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
ownedVIndices - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
ownedVIndicesFDLD - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
ownerCell - Variable in class edu.unh.sdb.lattice.Borrowed2DTriangleCell
 

P

packedID - Variable in class edu.unh.sdb.datasource.PackedIndexSpaceID
 
PackedIndexSpaceID - Class in edu.unh.sdb.datasource
This class implements the IndexSpaceID class using a single integer to represent the dimensions of the ID.
PackedIndexSpaceID(int) - Constructor for class edu.unh.sdb.datasource.PackedIndexSpaceID
Constructs a one dimensional PackedIndexSpaceID with axis value set to the argument.
PackedIndexSpaceID(int, int) - Constructor for class edu.unh.sdb.datasource.PackedIndexSpaceID
Constructs a two dimensional PackedIndexSpaceID with axis values set to the given values.
PackedIndexSpaceID(int, int, int) - Constructor for class edu.unh.sdb.datasource.PackedIndexSpaceID
Constructs a three dimensional PackedIndexSpaceID with axis values set to the given values.
PackedIndexSpaceID(int[]) - Constructor for class edu.unh.sdb.datasource.PackedIndexSpaceID
Constructs a PackedIndexSpaceID with dimensionality matching the length of the parameter array.
PackedIndexSpaceID(IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.PackedIndexSpaceID
Constructs a PackedIndexSpaceID from the contents of the IndexSpaceID argument.
PacketRetransmission(String) - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Logic to receive packet retransmissions.
packetSize - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
parse() - Method in class edu.unh.sdb.common.XMLReader
instantiates the main parser
parseArgs(String[]) - Static method in class edu.unh.sdb.ARRSTreeBuilder.ARCellParser
 
parser - Variable in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
parser - Variable in class edu.unh.sdb.common.XMLReader
the parsing object
partition - Variable in class edu.unh.sdb.lattice.Geometry
 
partitionByteSize - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
PartitionedFileArrayCellGroup - Class in edu.unh.sdb.lattice
This is an array implementation of the CellGroup Class.
PartitionedFileArrayCellGroup(GBounds, String, RecordSpec, String, RecordSpec, RecordSpec) - Constructor for class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
 
PartitionedSplitCellGroupGrid - Class in edu.unh.sdb.lattice
 
PartitionedSplitCellGroupGrid(Partitioning, AxisOrdering, String, String, RecordSpec, RecordSpec, RecordSpec) - Constructor for class edu.unh.sdb.lattice.PartitionedSplitCellGroupGrid
 
partitioning - Variable in class edu.unh.sdb.datasource.DSPartitionedStencil
 
partitioning - Variable in class edu.unh.sdb.datasource.RegularPartitionISID
 
partitioning - Variable in class edu.unh.sdb.lattice.CellGroupGrid
 
Partitioning - Class in edu.unh.sdb.lattice
A partitioning provides a mapping between an N-Dimensional geometric (real) space and an integer Index Space.
Partitioning(ISBounds, GBounds) - Constructor for class edu.unh.sdb.lattice.Partitioning
 
partitioning - Variable in class edu.unh.sdb.lattice.UnstructuredTopology
 
partitioningBounds - Variable in class edu.unh.sdb.datasource.ChunkedDataSource
 
partitioningBounds - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
partitioningBounds - Variable in class edu.unh.sdb.datasource.SparseDataSource
 
partitioningDimensions - Variable in class edu.unh.sdb.datasource.BlockCache
 
partitioningDimensionsArray - Variable in class edu.unh.sdb.datasource.DSPartitionedStencil
 
partitioningLowerBounds - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
partitioningShape - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
partitioningUpperBounds - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
partitioningVolume - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
partitionList - Variable in class edu.unh.sdb.datasource.DSListStencil
 
partitionListBytesLength - Variable in class edu.unh.sdb.datasource.DSPartitionedStencil
 
partitionOffset(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Map the partitioning space id to its 1D offset.
partitionRatio2blockDimensions() - Method in class edu.unh.sdb.datasource.DynamicChunking
 
partitionShape - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
partitionVolume() - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Return the volume of a single element in the stencil partitioning.
partitionVolume() - Method in class edu.unh.sdb.datasource.ISPartitioning
Return the volume of a single complete partition.
password - Variable in class edu.unh.sdb.mdb.URL
 
path - Variable in class edu.unh.sdb.datasource.ARRSNode
 
pdatumUDP(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
this method will extract data from datasource on remote server using UDT or UDP logic.
pdatumUDP(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
this method will extract data from datasource on remote server using UFTP logic.
pdatumUDP(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
this method will extract data from datasource on remote server using UFTP logic.
PDSDescriptor - Class in edu.unh.sdb.mdb
 
PDSDescriptor() - Constructor for class edu.unh.sdb.mdb.PDSDescriptor
Creates a new instance of PDSDescriptor
pDSID - Static variable in class edu.unh.sdb.mdb.Table
 
pENDIANNESS - Static variable in class edu.unh.sdb.mdb.Table
 
pendingCellOwner - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
pFIELDLAYOUT - Static variable in class edu.unh.sdb.mdb.Table
 
pFILEOFFSET - Static variable in class edu.unh.sdb.mdb.Table
 
PhysicalDataSource - Class in edu.unh.sdb.datasource
 
PhysicalDataSource(String, FDLDescriptor) - Constructor for class edu.unh.sdb.datasource.PhysicalDataSource
Create a PhysicalDataSource from an fdl
PhysicalDataSource(String, RecordDescriptor, ISBounds, AxisOrdering, String) - Constructor for class edu.unh.sdb.datasource.PhysicalDataSource
Create a Physical data source from specs
PHYSICALDS - Static variable in class edu.unh.sdb.mdb.Table
define table name
PlanarTriangleCellApproximator - Class in edu.unh.sdb.lattice
 
PlanarTriangleCellApproximator() - Constructor for class edu.unh.sdb.lattice.PlanarTriangleCellApproximator
 
Plane - Class in edu.unh.sdb.datasource
A plane that can be iterated through a Volume and can be rotated and translated.
Plane(double, double, double, double) - Constructor for class edu.unh.sdb.datasource.Plane
Creates a new instance of Plane
Plane() - Constructor for class edu.unh.sdb.datasource.Plane
 
plane0 - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
plane1 - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
planeBounds - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
planeIterator - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
planemapper - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
planePartitioning - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
Point - Class in edu.unh.sdb.lattice
Represent a location in the geometry
Point(int) - Constructor for class edu.unh.sdb.lattice.Point
Create a point with n dimensions.
Point(double) - Constructor for class edu.unh.sdb.lattice.Point
Create a one dimensional point with the given axis value.
Point(double, double) - Constructor for class edu.unh.sdb.lattice.Point
Create a two dimensional point with the given axis values.
Point(double, double, double) - Constructor for class edu.unh.sdb.lattice.Point
Create a three dimensional point with the given axis values.
Point(Datum) - Constructor for class edu.unh.sdb.lattice.Point
Create point with the axis values given in a Datum
Point(float[]) - Constructor for class edu.unh.sdb.lattice.Point
Create point with the coord values given in an array of floats.
Point(float[], int, int) - Constructor for class edu.unh.sdb.lattice.Point
Create a point with the coord values interleaved in an array of floats.
Point(Point) - Constructor for class edu.unh.sdb.lattice.Point
Create a copy of the Point parameter.
pointDS - Variable in class edu.unh.sdb.datasource.ARRSCellDataSource
 
pointInfoRD - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
pointListBounds - Variable in class edu.unh.sdb.lattice.UnstructuredTopology
 
pointOrder - Static variable in class edu.unh.sdb.datasource.DataCollection
 
PointOrderBFDS - Class in edu.unh.sdb.datasource
This class will read from a file of binary data, providing an n-dimensional datasource view of that file.
PointOrderBFDS(String, FDLDescriptor) - Constructor for class edu.unh.sdb.datasource.PointOrderBFDS
Create a BinaryFileDataSource from an fdl
PointOrderBFDS(String, RecordDescriptor, ISBounds, AxisOrdering, String, ByteOrder) - Constructor for class edu.unh.sdb.datasource.PointOrderBFDS
create a PointOrderBFDS, set the initial file offset at 0
PointOrderBFDS(String, RecordDescriptor, ISBounds, AxisOrdering, String, ByteOrder, int) - Constructor for class edu.unh.sdb.datasource.PointOrderBFDS
create a PointOrderBFDS, set the initial file offset at the given value
points - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
position - Variable in class edu.unh.sdb.datasource.CellID
 
positiveDirection - Variable in class edu.unh.sdb.datasource.BDISBoundsIterator
 
POSTGRE - Static variable in class edu.unh.sdb.mdb.DBIF
 
prefetchInterval - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
prefetchPoint - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
prefetchThread - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
prev(double) - Method in class edu.unh.sdb.datasource.Plane
 
prev() - Method in class edu.unh.sdb.datasource.SliceIterator
 
print() - Method in class edu.unh.sdb.lattice.Point
Print the point coordinates
printData(String, float[]) - Static method in class edu.unh.sdb.datasource.MRDataSource
 
printInfo() - Method in class edu.unh.sdb.datasource.ChomboRemoteClient
 
printNode(ARRSNode) - Method in class edu.unh.sdb.datasource.ARRSTree
Print the info of a node
printNode(int, ARRSNode) - Method in class edu.unh.sdb.datasource.ARRSTree
Print the info of a node with some indent
printStats() - Method in class edu.unh.sdb.datasource.StatsDataSource
 
printStep() - Static method in class edu.unh.sdb.datasource.AppMonitor
 
processArrayOfInt(String) - Method in class edu.unh.sdb.common.XMLReader
 
processDoc() - Method in class edu.unh.sdb.common.XMLReader
process the main document in the xml file
processDoc() - Method in class edu.unh.sdb.datasource.XDDLReader
process the main document in the xml file
processDoc() - Method in class edu.unh.sdb.datasource.XFDLReader
 
processDoc() - Method in class edu.unh.sdb.datasource.XTDLReader
process the main document in the xml file
processDoc() - Method in class edu.unh.sdb.lattice.XLDLReader
process the main document in the xml file
processFinalComponentMap() - Method in class edu.unh.sdb.datasource.BlockedDataSourceBuilder
completes a new FieldIDMapper for current component.
processFinalComponentMap() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
completes a new FieldIDMapper for current component
project(FieldIDMapper) - Method in class edu.unh.sdb.common.RecordDescriptor
Returns a new RecordDescriptor with fields copied from this RecordDescriptor.
project(RecordSpec) - Method in class edu.unh.sdb.common.RecordDescriptor
Returns a new RecordDescriptor with fields copied from this RecordDescriptor.
project(int) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Returns a new IndexSpaceID which is the projection of this IndexSpaceID onto a plane orthogonal to the specified axis.
project(int) - Method in class edu.unh.sdb.datasource.ISBounds
Returns a new ISBounds which is the projection of this ISBounds onto a plane orthogonal to the specified axis.
project(int) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
 
projectionAxis - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
projectTuple(Tuple3d, Tuple2d, int) - Static method in class edu.unh.sdb.datasource.Slice
Project the 'source' on a plane perpendicular on 'axis' and store the result in 'dest'.
propertyNames() - Method in class edu.unh.sdb.common.Metadata
Returns a Set of all the property names in this object.
psubblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.BasicBlock
this subblock does not check the bounds
psubblockUDP(BasicBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
this method will extract data from datasource on remote server using UDT or UDP logic.
psubblockUDP(BasicBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
this method will extract data from datasource on remote server using UFTP logic.
psubblockUDP(BasicBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
this method will extract data from datasource on remote server using UFTP logic.
publicDSArray - Variable in class edu.unh.sdb.datasource.XDDLReader
for PublicDS
publicDSNameList - Variable in class edu.unh.sdb.datasource.XDDLReader
 
pURL - Static variable in class edu.unh.sdb.mdb.Table
 

Q

queryBlockDstBounds - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 

R

raFile - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
raFile - Variable in class edu.unh.sdb.datasource.DataSink
 
raMAXIMUM - Static variable in class edu.unh.sdb.mdb.Table
 
raMINIMUM - Static variable in class edu.unh.sdb.mdb.Table
 
raNAME - Static variable in class edu.unh.sdb.mdb.Table
 
RandomBlockIterator - Class in edu.unh.sdb.datasource
this class generates a BlockIterator that randomly moves within this ISBounds of the iteration data source.
RandomBlockIterator(ISBounds, ISBounds, Indexable) - Constructor for class edu.unh.sdb.datasource.RandomBlockIterator
The partSpaceBounds is the iterationBounds in the partitioned space
RANGE - Static variable in class edu.unh.sdb.mdb.Table
define table name
RANGED_TYPE - Static variable in class edu.unh.sdb.datasource.XTDLReader
denotes a RandedType
RangedType - Class in edu.unh.sdb.common
 
RangedType(String, int, double, double) - Constructor for class edu.unh.sdb.common.RangedType
 
RangedType(String, int, long, long) - Constructor for class edu.unh.sdb.common.RangedType
 
RangedTypeBuilder - Class in edu.unh.sdb.common
Manufactures RangedType objects.
RangedTypeBuilder(UserTypeBuilder, String, String, String) - Constructor for class edu.unh.sdb.common.RangedTypeBuilder
Default constructor takes the base UserTypeBuilder and instantiates a new RangedTypebuilder adds a low/high range and exceptional value.
RangedTypeBuilder(UserTypeBuilder, String, String) - Constructor for class edu.unh.sdb.common.RangedTypeBuilder
Overidden constructor takes the base UserTypeBuilder and instantiates a new RangedTypebuilder adds a low/high range and default exceptional value.
RangedTypeBuilder(String, String, String, String, String) - Constructor for class edu.unh.sdb.common.RangedTypeBuilder
Overidden constructor takes a string name, string storage type, a low/high range and an exceptional value.
RangedTypeBuilder(String, String, String, String) - Constructor for class edu.unh.sdb.common.RangedTypeBuilder
Overidden constructor takes a string name, string storage type, a low/high range and sets a default exceptional value.
raSEQUENCE - Static variable in class edu.unh.sdb.mdb.Table
 
raTYPEID - Static variable in class edu.unh.sdb.mdb.Table
 
RayCastingIterator - Class in edu.unh.sdb.datasource
Iterates through an arbitrary oriented cuboid.
RayCastingIterator(DataSource, Vector3d, Matrix4d, Point3d, double, double, double) - Constructor for class edu.unh.sdb.datasource.RayCastingIterator
Start with a cuboid oriented along the Z axis, the base at z=-height/2 and the top at z = height/2.
RayCellIterator - Class in edu.unh.sdb.datasource
This class simulates a ray passing througth a cubic index space.
RayCellIterator(float, float, float, float, float, float, float, Indexable) - Constructor for class edu.unh.sdb.datasource.RayCellIterator
construct the interator by giving voxel,starting point,ending point,concreteBlock
RayIterator - Class in edu.unh.sdb.datasource
Reads data from a DataSource along a line segment.
RayIterator(DataSource, Point3d, Point3d, IndexSpaceID, double) - Constructor for class edu.unh.sdb.datasource.RayIterator
Reads data from dataSource along the line seqment between p1 and p2.
rDesc - Variable in class edu.unh.sdb.datasource.ComponentInfo
 
read() - Method in class edu.unh.sdb.datasource.Slice
Calculates the intersection between the Plane and the Volume and fills the the intersection poligon with data
readAllCommands() - Method in class edu.unh.sdb.ARRSTreeBuilder.ARCellParser
 
readCells() - Method in class edu.unh.sdb.lattice.FileArrayCellGroup
 
readCells() - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
readCells() - Method in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
 
readCounter - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
readLength - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
ReceiveData() - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
File transfer client program.
ReceiveData() - Static method in class edu.unh.sdb.datasource.RemoteUDTClient
File transfer client program.
Record - Static variable in class edu.unh.sdb.common.StorageType
 
RECORD - Static variable in class edu.unh.sdb.mdb.Table
define table name
RECORD_TYPE - Static variable in class edu.unh.sdb.datasource.XTDLReader
denotes a RecordType
recordByteSize - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
recordCacheHit() - Static method in class edu.unh.sdb.datasource.AppMonitor
 
recordCacheMiss() - Static method in class edu.unh.sdb.datasource.AppMonitor
 
recordDesc - Variable in class edu.unh.sdb.datasource.BlockManager
 
recordDesc - Variable in class edu.unh.sdb.datasource.DataCollection
Describes fields of Datums returned by this DataSource.
recordDesc - Variable in class edu.unh.sdb.datasource.VRIndexable
 
RecordDescriptor - Class in edu.unh.sdb.common
A RecordDescriptor is an ordered collection of AttributeDescriptors.
RecordDescriptor(AttributeDescriptor[]) - Constructor for class edu.unh.sdb.common.RecordDescriptor
Constructs an unnamed RecordDescriptor from an array of AttributeDescriptors.
RecordDescriptor(String, AttributeDescriptor[]) - Constructor for class edu.unh.sdb.common.RecordDescriptor
Constructs a named RecordDescriptor from an array of AttributeDescriptors.
RecordDescriptor(TypeTable, AttributeDescriptor[]) - Constructor for class edu.unh.sdb.common.RecordDescriptor
Constructs an unnamed RecordDescriptor from an array of AttributeDescriptors, referring to the given TypeTable.
RecordDescriptor(String, TypeTable, AttributeDescriptor[]) - Constructor for class edu.unh.sdb.common.RecordDescriptor
Constructs a named RecordDescriptor from an array of AttributeDescriptors, referring to the given TypeTable.
RecordDescriptor(String) - Constructor for class edu.unh.sdb.common.RecordDescriptor
Constructs an unnamed RecordDescriptor from a String in which each character identifies a field and its type.
RecordDescriptor(String, String) - Constructor for class edu.unh.sdb.common.RecordDescriptor
Constructs a named RecordDescriptor from a String in which each character identifies a field and its type.
RecordDescriptor(char, int) - Constructor for class edu.unh.sdb.common.RecordDescriptor
Constructs an unnamed uni-type RecordDescriptor of a specified length The type is determined by the first argument, the number of fields by the second.
RecordDescriptor(String, char, int) - Constructor for class edu.unh.sdb.common.RecordDescriptor
Constructs a named uni-type RecordDescriptor of a specified length The type is determined by the first argument, the number of fields by the second.
RecordDescriptor() - Constructor for class edu.unh.sdb.common.RecordDescriptor
Constructs an empty RecordDescriptor.
recordDescriptor - Variable in class edu.unh.sdb.datasource.DataBlockCollection
 
recordDescriptor - Variable in class edu.unh.sdb.datasource.DataSink
 
recordDescriptor - Variable in class edu.unh.sdb.datasource.DSBlockStencil
 
RecordDescriptor.TypeCount - Class in edu.unh.sdb.common
 
RecordDescriptorBuilder - Class in edu.unh.sdb.common
Manufactures Record Descriptor objects.
RecordDescriptorBuilder(String) - Constructor for class edu.unh.sdb.common.RecordDescriptorBuilder
Default constructor takes a string name and array of attributes (fields)
RecordDescriptorBuilder(String, AttributeDescriptor[]) - Constructor for class edu.unh.sdb.common.RecordDescriptorBuilder
Overridden constructor takes a string name and array of attributes (fields)
RecordDescriptorBuilder(String, TypeTable, AttributeDescriptor[]) - Constructor for class edu.unh.sdb.common.RecordDescriptorBuilder
Overridden constructor takes a string name, string storage type, a low/high range and an exceptional value.
recordNumFields - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
recordSize - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Declares the record size
RecordSpec - Class in edu.unh.sdb.common
A RecordSpec holds an array of integers, where each integer specifies the field number of a desired attribute.
RecordSpec(int[]) - Constructor for class edu.unh.sdb.common.RecordSpec
Constructor that takes an array of ints
RecordSpec(int) - Constructor for class edu.unh.sdb.common.RecordSpec
Constructor that creates an identity mapping of the specified length.
Recoverable - Static variable in class edu.unh.sdb.common.SDBError
 
RectCellBlock - Class in edu.unh.sdb.datasource
 
RectCellBlock() - Constructor for class edu.unh.sdb.datasource.RectCellBlock
Construct a RectCellBlock without arguments
RectCellBlock(ISBounds, AxisOrdering, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.RectCellBlock
Construct a RectCellBlock with the given bounds, axis axisOrdering and RecordDescriptor.
RectCellBlock(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.RectCellBlock
Construct a RectCellBlock with the given bounds and number of attributes
RectCellBlock(DataBlock) - Constructor for class edu.unh.sdb.datasource.RectCellBlock
Construct a RectCellBlock from a given DataBlock
RECTILINEAR_TOPOLOGY - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote recti-linear topology
RectilinearCell - Class in edu.unh.sdb.datasource
 
RectilinearCell() - Constructor for class edu.unh.sdb.datasource.RectilinearCell
Constructor without arguments
RectilinearCell(CellID) - Constructor for class edu.unh.sdb.datasource.RectilinearCell
Constructor takes a single CellID
RectilinearCell(CellID, int) - Constructor for class edu.unh.sdb.datasource.RectilinearCell
Constructor takes the specified CellID and the dimensionality
RectilinearCell(CellID, ISBounds) - Constructor for class edu.unh.sdb.datasource.RectilinearCell
Constructor takes the specified CellID and the base bounds
RectilinearCellID - Class in edu.unh.sdb.datasource
 
RectilinearCellID() - Constructor for class edu.unh.sdb.datasource.RectilinearCellID
Constructor without argument
RectilinearCellID(IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.RectilinearCellID
Constructor takes a single IndexSpaceID that represents the position of a cell in a rectilinear cell space.
RectilinearTopology - Class in edu.unh.sdb.lattice
A Topology for Rectilinear data.
RectilinearTopology(DataSource, Geometry) - Constructor for class edu.unh.sdb.lattice.RectilinearTopology
 
reduce(int) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use copyReducedBy( int )
reduceByCoord(float[], int) - Static method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Divide all elements of the vector by the absolute value of the coordinate at the specified axis.
reduceByOne() - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
Use copyReducedBy( 1 )
reduceByOne(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Deprecated.
rdb: I find the semantics very confusing. One would expect that the this object would be the one changed, not the argument object. Especially since our other similar methods either change "this" or return a new object (except decreaseByOne(ISB)).
reduceNormal(float[]) - Static method in class edu.unh.sdb.datasource.CacheMaker
 
referent - Variable in class edu.unh.sdb.datasource.AliasDataSource
 
referent - Variable in class edu.unh.sdb.datasource.ForeignReferenceDataSource
 
refLowerArray() - Method in class edu.unh.sdb.datasource.ISIterator
Return a reference to the lower bounds of the iteration space.
refUpperArray() - Method in class edu.unh.sdb.datasource.ISIterator
Return a reference to the lower bounds of the iteration space.
RegCellDataSource - Class in edu.unh.sdb.datasource
 
RegCellDataSource(DataSource) - Constructor for class edu.unh.sdb.datasource.RegCellDataSource
Constructor sets all data members to copies of the corresponding members from a point DataSource corresponding to this cell data source.
register(TriangleCell) - Method in class edu.unh.sdb.lattice.FileArrayCellGroup
 
register(TriangleCell) - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
register(TriangleCell, OwnerInfo) - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
register(int) - Method in class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
register(TriangleCell, int) - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroup
 
register(TriangleCell, int) - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroupGrid
 
registerCells() - Method in class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
registerWorkSpace(WorkSpace) - Static method in class edu.unh.sdb.common.WorkSpaceManager
Enter the given WorkSpace into the WorkSpaceManager's internal data structures.
REGULARCELL_GEOMETRY - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote recti-linear topology
RegularCellGeometry - Class in edu.unh.sdb.lattice
 
RegularCellGeometry(ISBounds, GBounds) - Constructor for class edu.unh.sdb.lattice.RegularCellGeometry
 
RegularCellGeometry(GBounds, RegularPartitioning) - Constructor for class edu.unh.sdb.lattice.RegularCellGeometry
 
RegularCellPartitioning - Class in edu.unh.sdb.lattice
 
RegularCellPartitioning(ISBounds, GBounds) - Constructor for class edu.unh.sdb.lattice.RegularCellPartitioning
 
RegularGridBlockManager - Class in edu.unh.sdb.datasource
 
RegularGridBlockManager(ComponentInfo[]) - Constructor for class edu.unh.sdb.datasource.RegularGridBlockManager
 
RegularISPartitioning - Class in edu.unh.sdb.datasource
This class implements a regular partitioning of a bounded index space.
RegularISPartitioning(ISBounds, ISBounds) - Constructor for class edu.unh.sdb.datasource.RegularISPartitioning
Create a regular partition over space, given the desired partitioning space
RegularISPartitioning(ISBounds, ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.RegularISPartitioning
Create a regular partition over space, given the desired partitioning space and an AxisOrdering
RegularISPartitioning(IndexSpaceID, ISBounds) - Constructor for class edu.unh.sdb.datasource.RegularISPartitioning
Create a regular partition over space, given the desired block size for each partition.
RegularISPartitioning(IndexSpaceID, ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.RegularISPartitioning
Create a regular partition over space, given the shape of each partition, not the dimensions of the partitioning Space.
RegularPartitioning - Class in edu.unh.sdb.lattice
 
RegularPartitioning(ISBounds, GBounds) - Constructor for class edu.unh.sdb.lattice.RegularPartitioning
 
RegularPartitionISID - Class in edu.unh.sdb.datasource
Barely started; don't trust anything; Perhaps shouldn't try to extend IntegerIndexSpaceID
RegularPartitionISID(RegularISPartitioning, int[]) - Constructor for class edu.unh.sdb.datasource.RegularPartitionISID
 
RegularPartitionISID(RegularISPartitioning, IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.RegularPartitionISID
Constructs a RegularPartitionISID for the spacePos in the partitioning, part
REGULARPOINT_GEOMETRY - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote recti-linear topology
RegularPointGeometry - Class in edu.unh.sdb.lattice
 
RegularPointGeometry(ISBounds, GBounds) - Constructor for class edu.unh.sdb.lattice.RegularPointGeometry
 
RegularPointGeometry(GBounds, RegularPartitioning) - Constructor for class edu.unh.sdb.lattice.RegularPointGeometry
 
relativeLocation() - Method in class edu.unh.sdb.datasource.ISIterator
Map the current position of this iterator to an equivalent IndexSpaceID relative to the lower bound of this iterator
relativeLocation(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISIterator
Map the current position of this iterator to an equivalent IndexSpaceID relative to the lower bound of this iterator.
RemoteBFDS - Class in edu.unh.sdb.datasource
This class will read data from a remote datasource
RemoteBFDS(String, RecordDescriptor, ISBounds, AxisOrdering, String, String) - Constructor for class edu.unh.sdb.datasource.RemoteBFDS
crate a RemoteBFDS, set the initial file offset at 0
RemoteServerDelayLengthDefaultValue - Static variable in class edu.unh.sdb.common.Globals
 
RemoteServerFinalDelayDefaultValue - Static variable in class edu.unh.sdb.common.Globals
 
RemoteServerInitialDelayDefaultValue - Static variable in class edu.unh.sdb.common.Globals
 
RemoteTransferBufferSizeDefaultValue - Static variable in class edu.unh.sdb.common.Globals
 
RemoteUDPClient - Class in edu.unh.sdb.datasource
This class will read data from a remote datasource using UFTP logic.
RemoteUDPClient(String, RecordDescriptor, ISBounds, AxisOrdering, String, String) - Constructor for class edu.unh.sdb.datasource.RemoteUDPClient
RemoteUDPClient class constructor.
RemoteUDPClient.ClientAlarm - Class in edu.unh.sdb.datasource
Thread class to control how long packet receiving has to be done.
RemoteUDPClient.ClientAlarm(int) - Constructor for class edu.unh.sdb.datasource.RemoteUDPClient.ClientAlarm
 
RemoteUDPClient.ClientStarter - Class in edu.unh.sdb.datasource
Thread class to start the Client.
RemoteUDPClient.ClientStarter() - Constructor for class edu.unh.sdb.datasource.RemoteUDPClient.ClientStarter
 
RemoteUDPClient.InterPacketDelay - Class in edu.unh.sdb.datasource
Interpacket delay parameter setter.
RemoteUDPClient.InterPacketDelay() - Constructor for class edu.unh.sdb.datasource.RemoteUDPClient.InterPacketDelay
 
RemoteUDTClient - Class in edu.unh.sdb.datasource
This class will read data from a remote datasource using UFTP logic.
RemoteUDTClient(String, RecordDescriptor, ISBounds, AxisOrdering, String, String) - Constructor for class edu.unh.sdb.datasource.RemoteUDTClient
RemoteUDTClient class constructor.
RemoteUDTClient.ClientStarter - Class in edu.unh.sdb.datasource
Thread class to start the Client.
RemoteUDTClient.ClientStarter() - Constructor for class edu.unh.sdb.datasource.RemoteUDTClient.ClientStarter
 
remove(String) - Method in class edu.unh.sdb.common.Metadata
Removes the property associated with the given key.
removeMetadata(String) - Method in class edu.unh.sdb.common.MetadataCollection
Removes the Metadata object with the given name from the collection.
removePrefetchThread() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
rempart - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
rename(String[]) - Method in class edu.unh.sdb.datasource.ComponentInfo
rename all (or part of) the attributes by giving an array of names
renewEnumWindow() - Method in class edu.unh.sdb.datasource.RandomBlockIterator
preproces the iteration
reorder(int) - Method in class edu.unh.sdb.common.ByteValues
Return a new Values object with the values shuffled.
reorder(int) - Method in class edu.unh.sdb.common.DoubleValues
Return a new Values object with the values shuffled.
reorder(int) - Method in class edu.unh.sdb.common.FloatValues
Return a new Values object with the values shuffled.
reorder(int) - Method in class edu.unh.sdb.common.IntValues
Return a new Values object with the values shuffled.
reorder(int) - Method in class edu.unh.sdb.common.MixedValues
Return a new Values object with the values shuffled.
reorder(int) - Method in class edu.unh.sdb.common.ShortValues
Return a new Values object with the values shuffled.
reorder(int) - Method in class edu.unh.sdb.common.Values
Return a new Values object with the values shuffled.
res_level - Variable in class edu.unh.sdb.datasource.VRIndexable
 
resetAxis(int) - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
 
resetAxis(int) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
 
resetReadCounter() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
 
resolveEntity(String, String) - Method in class edu.unh.sdb.common.XMLEntityResolver
 
rewind() - Method in class edu.unh.sdb.datasource.DataSourceCollection
Resets the index to beginning of the list
rewind() - Method in class edu.unh.sdb.lattice.LatticeCollection
Resets the index to beginning of the list
rFIELDNAME - Static variable in class edu.unh.sdb.mdb.Table
 
rFIELDPOSITION - Static variable in class edu.unh.sdb.mdb.Table
 
rotateBank(Matrix4d) - Method in class edu.unh.sdb.common.EulerAngles
 
rotateBank(Matrix4d) - Method in class edu.unh.sdb.common.EulerAnglesYXZ
 
rotateBank(Matrix4d) - Method in class edu.unh.sdb.common.EulerAnglesZYX
 
rotateHeading(Matrix4d) - Method in class edu.unh.sdb.common.EulerAngles
 
rotateHeading(Matrix4d) - Method in class edu.unh.sdb.common.EulerAnglesYXZ
 
rotateHeading(Matrix4d) - Method in class edu.unh.sdb.common.EulerAnglesZYX
 
rotatePitch(Matrix4d) - Method in class edu.unh.sdb.common.EulerAngles
 
rotatePitch(Matrix4d) - Method in class edu.unh.sdb.common.EulerAnglesYXZ
 
rotatePitch(Matrix4d) - Method in class edu.unh.sdb.common.EulerAnglesZYX
 
rRECORDID - Static variable in class edu.unh.sdb.mdb.Table
 
rREPICATION - Static variable in class edu.unh.sdb.mdb.Table
 
rsubblock(byte[], ISBounds) - Method in class edu.unh.sdb.datasource.PointOrderBFDS
This function is used by SDBServer, it extracts a byte array from disk regardless the type of attributes.
rTYPEID - Static variable in class edu.unh.sdb.mdb.Table
 
run() - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator.IOThread
 
run() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator.IOThread
 
run() - Method in class edu.unh.sdb.datasource.RemoteUDPClient.ClientAlarm
 
run() - Method in class edu.unh.sdb.datasource.RemoteUDPClient.ClientStarter
 
run() - Method in class edu.unh.sdb.datasource.RemoteUDTClient.ClientStarter
 
run() - Method in class edu.unh.sdb.datasource.ThreadedSliceCache.SliceCacheIOThread
 

S

scale(int) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Scale this IndexSpaceID's axis values by the given integer.
scale(double) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Scale this IndexSpaceID's axis values by the given double.
scratchID2D - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
scratchID3D - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
SDBError - Class in edu.unh.sdb.common
 
SDBError(int, String) - Constructor for class edu.unh.sdb.common.SDBError
Constructor sets the error level for a particular error instance.
SDBError(int, SDBException) - Constructor for class edu.unh.sdb.common.SDBError
Constructor sets the error level for a particular error instance.
SDBException - Exception in edu.unh.sdb.common
This is the parent class for all exceptions specific to the sdb project.
SDBException(String) - Constructor for exception edu.unh.sdb.common.SDBException
Create an exception with an explanatory message.
SDBIterator - Interface in edu.unh.sdb.common
The SDBIterator interface is a simple interface designed for efficient implementation.
searchBlock(IndexSpaceID) - Method in class edu.unh.sdb.datasource.BlockManager
 
searchBlock(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RegularGridBlockManager
 
segmentPlaneIntersection(Vector3d, Vector3d, double, double, Vector3d, double) - Static method in class edu.unh.sdb.datasource.SliceUtil
Intersection between a ray segment and a plane section 13.9 3D Math Primer for Graphics and Game Development by Dunn&Parberry
selectHyperslab(int, int, long[], long[], long[], long[]) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
SendBounds(String) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
 
SendControlCode(byte) - Static method in class edu.unh.sdb.datasource.GraniteRemoteClient
Send the given byte to the master thread on the server.
SendControlCode(byte) - Static method in class edu.unh.sdb.datasource.RemoteUDTClient
Send the given byte to the master thread on the server.
SendFileName(String) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
 
SendPartitionListLengthInfo(String) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
 
SendStencilInfo(String) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
 
Seqnum_Decoder(byte[]) - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Finds the integer value of 32 bit binary string.
Server - Interface in edu.unh.sdb.datasource
 
server_subblock(byte[], ISBounds, int) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
server_subblock(byte[], ISBounds, int) - Method in class edu.unh.sdb.datasource.PointOrderBFDS
 
serverAlarmPort - Static variable in class edu.unh.sdb.common.Globals
 
serverAlarmPort - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
serverAlarmPort - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
serverControlPort - Static variable in class edu.unh.sdb.common.Globals
 
serverControlPort - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
serverControlPort - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
serverDataPort - Static variable in class edu.unh.sdb.common.Globals
 
serverDataPort - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
serverDataPort - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
ServerToClientAlarm() - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Server to Client Alarm Information reader.
ServerToClientControlInfo() - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Server to Client Control Information regarding file size & packet size.
ServerToClientControlInfo() - Static method in class edu.unh.sdb.datasource.RemoteUDTClient
Server to Client Control Information regarding file size & packet size.
set(EulerAngles.Angle, double) - Method in class edu.unh.sdb.common.EulerAngles
 
set(int[], float) - Method in class edu.unh.sdb.common.FloatDataArray
 
set(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSArrayStencil
Set the stencil element containing the id to "active".
set(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Set the stencil element containing the id to "active".
set(IndexSpaceID, DataBlock) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Set the stencil element containing the id to "active", associating the given DataBlock with that element.
set(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSListStencil
Set the stencil element containing the id to "active".
set(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSStencil
Set the stencil element containing the id to "active".
set(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Copy the upper and lower bounds of the argument ISBounds into this object.
set(int, double) - Method in class edu.unh.sdb.datasource.Plane
 
set(Tuple3d, int, double) - Static method in class edu.unh.sdb.datasource.SliceUtil
 
setAll(ISBounds, IndexSpaceID, int[]) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
 
setAnchor(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Change the anchor position that this object uses to partition the iteration with.
setAndMove(ISBounds, int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Set the bounds of this object so it is the same shape as the ISBounds argument, but translated to the location represented by the array argument.
setAndMoveTo(ISBounds, int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Set the bounds of this object so it is the same shape as the ISBounds argument, but translated to the location represented by the array argument.
setApproximatorType(int) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the approximator type for this Lattice
setARRSTree(ARRSTree) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Set an ARRS tree
setARRSTree(ARRSTree) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Set an ARRS tree
setAttributeName(int, String) - Method in class edu.unh.sdb.datasource.ComponentInfo
rename an attribute at position given by index
setAttributeOrderRod(ByteBuffer, int, int, int, int, int, int) - Method in class edu.unh.sdb.datasource.BasicBlock
given a rod of data of one attribute, copy the spedified attribute into the corresponding location in the BasicBlock , used for attribute order binaryFiledataSoure
setAttributeOrderRod(ByteBuffer, int, int, int, int, int, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
set a rod of data in the corresponding location of this datablock, assume the rod contains only one attribute, works for attributeOrder
setAttributes(AttributeDescriptor[]) - Method in class edu.unh.sdb.common.RecordDescriptorBuilder
Sets the attributes to cloned objects passed in the argument
setAxisOrdering(AxisOrdering) - Method in class edu.unh.sdb.datasource.BinaryFileDataSource
Set a new the AxisOrdering for this datasource.
setAxisOrdering(AxisOrdering) - Method in class edu.unh.sdb.datasource.DataCollection
Set a new the AxisOrdering for this datasource.
setAxisOrdering(AxisOrdering) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Sets the axisOrdering
setAxisOrdering(AxisOrdering) - Method in class edu.unh.sdb.datasource.XFDLReader
Sets the Axis Ordering object
setBacktoFront(boolean) - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
setBank(double) - Method in class edu.unh.sdb.common.EulerAngles
 
setBaseBounds(ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Set the base bounds
setBaseBounds(ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Set the base bounds
setBaseBounds(ISBounds) - Method in class edu.unh.sdb.datasource.ARRSNode
Set the base bound value
setBaseBounds(ISBounds) - Method in class edu.unh.sdb.datasource.RectilinearCell
Set the base bounds of a cell
setBasePosition(IntegerIndexSpaceID) - Method in class edu.unh.sdb.datasource.DimResolution
Set the position in the base space
setBaseShape(IntegerIndexSpaceID) - Method in class edu.unh.sdb.datasource.DimResolution
Set the size in the base space
setBasicBlockBounds(String) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Method to tell server the bounds for basic block construction.
setBasicBlockBounds(String) - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Method to tell server the bounds for basic block construction.
setBasicBlockBounds(String) - Static method in class edu.unh.sdb.datasource.RemoteUDTClient
Method to tell server the bounds for basic block construction.
setBlockAccessedCallback(DynamicChunking.BlockAccessCallback) - Method in class edu.unh.sdb.datasource.DynamicChunking
Sets up a callback function that is called each time a block is accessed.
setBlockBounds(ISBounds) - Method in class edu.unh.sdb.datasource.SparseDataSource
set/reset the size of the blocks; only do this if the physical file changes correspondingly -- not a public method.
setBlockDimensions(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DynamicChunking
 
setBlockDimensions(IndexSpaceID) - Method in class edu.unh.sdb.datasource.FDLDescriptor
 
setBlockSize(IndexSpaceID) - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
setBlockSizeAdaptiveOptimization(ISBounds, String) - Method in class edu.unh.sdb.datasource.DynamicChunking
 
setBlockSizeSliceOptimization(EulerAngles, ISBounds) - Method in class edu.unh.sdb.datasource.DynamicChunking
Uses the maximum block size given the amount of available memory.
setBounds(ISBounds) - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Change the bounds of the space that this object iterates over.
setBounds(ISBounds) - Method in class edu.unh.sdb.datasource.DataCollection
Sets the bounds of the Index Space for this DataSource.
setBounds(ISBounds) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Sets the Index Space bounds
setBounds(ISBounds) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Change the bounds of the space that this object iterates over.
setBounds(ISBounds) - Method in class edu.unh.sdb.datasource.ISIterator
Change the IndexSpace to which this ISIterator is bound
setBounds(ISBounds) - Method in class edu.unh.sdb.datasource.XDDLReader
Sets the bounds of the Index Space for this datasource.
setBounds(GBounds) - Method in class edu.unh.sdb.lattice.GIterator
Change the IndexSpace to which this GIterator is bound
setBoundsAndShape(ISBounds, int[]) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
 
setBufferByteOrder(ByteBuffer) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
set the byte order for the given buffer
setByAttribute(Values) - Method in class edu.unh.sdb.datasource.DataBlock
 
setByte(int, byte) - Method in class edu.unh.sdb.common.ByteDatum
Set the attribute indicated by the first argument to the value of the second argument.
setByte(int, byte) - Method in class edu.unh.sdb.common.ByteValues
Set the specified entry to the specified value after conversion, if needed.
setByte(int, byte) - Method in class edu.unh.sdb.common.Datum
Set the attribute indicated by the first argument to the value of the second argument.
setByte(int, byte) - Method in class edu.unh.sdb.common.DoubleDatum
Set the attribute indicated by the first argument to the value of the second argument.
setByte(int, byte) - Method in class edu.unh.sdb.common.DoubleValues
Set the specified entry to the specified value after conversion, if needed.
setByte(int, byte) - Method in class edu.unh.sdb.common.FloatDatum
Set the attribute indicated by the first argument to the value of the second argument.
setByte(int, byte) - Method in class edu.unh.sdb.common.FloatValues
Set the specified entry to the specified value after conversion, if needed.
setByte(int, byte) - Method in class edu.unh.sdb.common.IntDatum
Set the attribute indicated by the first argument to the value of the second argument.
setByte(int, byte) - Method in class edu.unh.sdb.common.IntValues
Set the specified entry to the specified value after conversion, if needed.
setByte(int, byte) - Method in class edu.unh.sdb.common.MixedDatum
Set the attribute indicated by the first argument to the value of the second argument.
setByte(int, byte) - Method in class edu.unh.sdb.common.MixedValues
Set the specified entry to the specified value after conversion, if needed.
setByte(int, byte) - Method in class edu.unh.sdb.common.ShortDatum
Set the attribute indicated by the first argument to the value of the second argument.
setByte(int, byte) - Method in class edu.unh.sdb.common.ShortValues
Set the specified entry to the specified value after conversion, if needed.
setByte(int, byte) - Method in class edu.unh.sdb.common.Values
 
setByte(IndexSpaceID, int, byte) - Method in class edu.unh.sdb.datasource.DataBlock
For the position of the 1st argument, set the attribute specified by the 2nd argument to the value of the 3rd argument.
setByteOrder(ByteOrder) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Tell the FDLDescriptor the byte order for the file.
setByteOrder(ByteOrder) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
set the byteOrder of this binary file.
setBytes(byte[], int, int) - Method in class edu.unh.sdb.common.ByteDatum
Assigns values to an existing datum by copying a subset of values from an array.
setBytes(byte[]) - Method in class edu.unh.sdb.common.Datum
Copy the values in the argument array to this datum.
setBytes(byte[], int) - Method in class edu.unh.sdb.common.Datum
Copy the values in the argument array to this datum.
setBytes(byte[], int, int) - Method in class edu.unh.sdb.common.Datum
Assigns values to an existing datum by copying a subset of values from an array.
setBytes(byte[]) - Method in class edu.unh.sdb.common.MixedDatum
 
setBytes(int, byte[]) - Method in class edu.unh.sdb.datasource.BasicBlock
Assign attribute values for all points in the block
setBytes(int, byte[]) - Method in class edu.unh.sdb.datasource.CompositeBlock
Assign attribute values for all points in the block
setBytes(IndexSpaceID, byte[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all attributes of the Datum at the specified isid to the values in passed array.
setBytes(int, byte[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set the specified attribute of the Datum at all points to the values in passed attribute array.
setBytesByAttribute(byte[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setBytesByPoint(byte[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setCacheSize(int) - Method in class edu.unh.sdb.datasource.SparseDataSource
Define the number of partitions to be kept in the cache memory.
setCellBlockShape(IntegerIndexSpaceID) - Method in class edu.unh.sdb.datasource.DimResolution
Set the size in the cell space
setCellData(Datum[]) - Method in class edu.unh.sdb.datasource.Cell
Set the data of a cell
setCellDim(int) - Method in class edu.unh.sdb.datasource.Cell
Set the dimension of a cell
setCellID(CellID) - Method in class edu.unh.sdb.datasource.Cell
Set the cell id of a cell
setCellIndexable(CellIndexable) - Method in class edu.unh.sdb.datasource.ARRSNode
Set an ARR cell source
setCellVertices(Point[]) - Method in class edu.unh.sdb.datasource.Cell
Set the vertice values of a cell
setChomboDesiredAttribute(int) - Method in class edu.unh.sdb.datasource.FDLDescriptor
For Chombo files, we currently support reading only a single attribute.
setChunkDimensions(IndexSpaceID) - Method in class edu.unh.sdb.datasource.FDLDescriptor
 
setComponent(int) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
setComponentAxes(Integer, Integer) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
adds an upper and lower axes to an individual component bounds specification
setComponentFieldPair(String, Integer, String) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
store fieldname/position pairs for the component attributes
setComponentFieldPair(String, Integer) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Store fieldname/position pairs for the component attributes.
setCompositeBounds(ISBounds) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Sets the bounds of the Index Space for the pending datasource
setCoord(int, int) - Method in class edu.unh.sdb.common.SpaceID
Set the specified axis to the specified value.
setCoord(int, float) - Method in class edu.unh.sdb.common.SpaceID
Set the specified axis to the specified value.
setCoord(int, int) - Method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
Set the specified axis to the specified value.
setCoord(int, int) - Method in class edu.unh.sdb.datasource.ISIterator
Set the specified axis to the specified value.
setCoord(int, int) - Method in class edu.unh.sdb.datasource.PackedIndexSpaceID
Set the specified axis to the specified value.
setCoord(int, float) - Method in class edu.unh.sdb.lattice.GIterator
Set the specified axis to the specified value.
setCoord(int, float) - Method in class edu.unh.sdb.lattice.Point
Set the specified axis to the specified value.
setCoord(int, int) - Method in class edu.unh.sdb.lattice.Point
Set the specified axis to the specified value.
setCoordinateFDLFileName(String) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the FDL File name for SplitUnstructuredTopology
setCoordinateRecordSpec(RecordSpec) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the coordinateRecordSpec for SplitUnstructuredTopology
setCoords(float[], int, int) - Method in class edu.unh.sdb.lattice.Point
Assign new coordinate values to an existing Point of the same dimensionality.
setCurrentDS(int) - Method in class edu.unh.sdb.datasource.MRDataSource
int setCurrentDS( int newLevel ) Set resolution level to the DS 0 on the specified level; don't open the datasource.
setCurrentDS(int, int) - Method in class edu.unh.sdb.datasource.MRDataSource
int setCurrentDS( int newLevel, int index ) Set resolution level to specified level and DS, but don't open the datasource If the desired level or index does not exist, no change is made.
setCurrentFDLDescriptor(FDLDescriptor) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Sets the current File Descriptor Language object
setCurrentWorkSpace(String) - Static method in class edu.unh.sdb.common.WorkSpaceManager
Set the current WorkSpace to the WorkSpace with the given name.
setCurrentWorkSpace(WorkSpace) - Static method in class edu.unh.sdb.common.WorkSpaceManager
Set the current WorkSpace to the given WorkSpace.
setData(int, byte) - Method in class edu.unh.sdb.common.ByteValues
set the data at given index
setData(int, double) - Method in class edu.unh.sdb.common.DoubleValues
set the data at given index
setData(int, float) - Method in class edu.unh.sdb.common.FloatValues
set the data at given index NEW NEW NEW
setData(int, int) - Method in class edu.unh.sdb.common.IntValues
set the data at given index
setData(int, short) - Method in class edu.unh.sdb.common.ShortValues
set the data at given index
setData(byte[]) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Populate the active elements (Datablocks) of this stencil with the data found in the given array.
setData(DataBlock) - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
setData(Datum[]) - Method in class edu.unh.sdb.lattice.Cell
 
setDataBlock(DataBlock) - Method in class edu.unh.sdb.datasource.DataBlockProxy
setDataBlock( DataBlock blk )
setDataFileType(String) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Sets the DataFile Type as a String
setDataFileURL(String) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Sets the URL of the XML input file
setDataRecordSpec(RecordSpec) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the dataRecordSpec for SplitUnstructuredTopology
setDataSource(String, String) - Method in class edu.unh.sdb.datasource.DataSourceServer
reset and allocate i/o buffer
setDataSource(DataSource) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Set the datasource being iterated over.
setDataSource(DataSource) - Method in interface edu.unh.sdb.datasource.ObliquePlaneIteratorInterface
 
setDataSource(DataSource) - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
setDataSource(String, String) - Method in interface edu.unh.sdb.datasource.Server
 
setDataSource(DataSource) - Method in class edu.unh.sdb.datasource.Slice
Sets the data source where the volume is stored.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.ARBlock
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.BasicBlock
Set the location specified by the IndexSpaceID to the given datum.
setDatum(int, int, Datum, ByteBuffer) - Method in class edu.unh.sdb.datasource.BinaryFileDataSource
this method is used by both AttributeOrderBFDS and PointOrderBFDS in Datum methods This method will replace setDatum(int i, int storageType, Datum datum ), and used java.14 byteBuffer
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.CompositeBlock
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.DataBlock
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.DataBlockProxy
 
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.RayCellIterator
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.URCellBlock
Set the location specified by the IndexSpaceID to the given datum.
setDatum(IndexSpaceID, Datum) - Method in class edu.unh.sdb.datasource.VRDataBlock
Set the location specified by the IndexSpaceID to the given datum
setDB(URL) - Method in class edu.unh.sdb.mdb.DBIF
 
setDefaultDatum(Datum) - Method in class edu.unh.sdb.lattice.Lattice
Set the datum returned when no data is available for a point in the domain.
setDefaults() - Method in class edu.unh.sdb.common.XMLReader
Sets all pending values to null and sets the join flag to FALSE
setDefaults() - Method in class edu.unh.sdb.datasource.XDDLReader
Sets all pending values to null and sets the join flag to FALSE
setDefaults() - Method in class edu.unh.sdb.datasource.XFDLReader
Instantiates the FDLDescriptor object to hold new parser info
setDefaults() - Method in class edu.unh.sdb.datasource.XTDLReader
Sets all pending values to null
setDefaults() - Method in class edu.unh.sdb.lattice.XLDLReader
Sets all pending values to null and sets the join flag to FALSE
setDimensionality(int) - Method in class edu.unh.sdb.lattice.Cell
 
setDimensionality(int) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the topology dimension for this Lattice
setDimensionsInUnits(IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Sets this to the IndexSpaceID representing the dimensions in units of the hypercube whose dimensions in points are specified by this IndexSpaceID.
setDimResolution(DimResolution) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Set the resolution
setDimResolution(DimResolution) - Method in class edu.unh.sdb.datasource.URCellBlock
Set the resolution
setDouble(int, double) - Method in class edu.unh.sdb.common.ByteDatum
Set the attribute indicated by the first argument to the value of the second argument.
setDouble(int, double) - Method in class edu.unh.sdb.common.ByteValues
Set the specified entry to the specified value after conversion, if needed.
setDouble(int, double) - Method in class edu.unh.sdb.common.Datum
Set the attribute indicated by the first argument to the value of the second argument.
setDouble(int, double) - Method in class edu.unh.sdb.common.DoubleDatum
Set the attribute indicated by the first argument to the value of the second argument.
setDouble(int, double) - Method in class edu.unh.sdb.common.DoubleValues
Set the specified entry to the specified value after conversion, if needed.
setDouble(int, double) - Method in class edu.unh.sdb.common.FloatDatum
Set the attribute indicated by the first argument to the value of the second argument.
setDouble(int, double) - Method in class edu.unh.sdb.common.FloatValues
Set the specified entry to the specified value after conversion, if needed.
setDouble(int, double) - Method in class edu.unh.sdb.common.IntDatum
Set the attribute indicated by the first argument to the value of the second argument.
setDouble(int, double) - Method in class edu.unh.sdb.common.IntValues
Set the specified entry to the specified value after conversion, if needed.
setDouble(int, double) - Method in class edu.unh.sdb.common.MixedDatum
Set the attribute indicated by the first argument to the value of the second argument.
setDouble(int, double) - Method in class edu.unh.sdb.common.MixedValues
Set the specified entry to the specified value after conversion, if needed.
setDouble(int, double) - Method in class edu.unh.sdb.common.ShortDatum
Set the attribute indicated by the first argument to the value of the second argument.
setDouble(int, double) - Method in class edu.unh.sdb.common.ShortValues
Set the specified entry to the specified value after conversion, if needed.
setDouble(int, double) - Method in class edu.unh.sdb.common.Values
 
setDouble(IndexSpaceID, int, double) - Method in class edu.unh.sdb.datasource.DataBlock
For the position of the 1st argument, set the attribute specified by the 2nd argument to the value of the 3rd argument.
setDoubleAMRData(byte[]) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Populate the active elements (Datablocks) of this stencil with the data found in the given array.
setDoubles(double[]) - Method in class edu.unh.sdb.common.Datum
Copy the values in the argument array to this datum.
setDoubles(double[], int) - Method in class edu.unh.sdb.common.Datum
Copy values from a piece of the argument array to this datum.
setDoubles(double[], int, int) - Method in class edu.unh.sdb.common.Datum
Assigns values to an existing datum by copying a subset of values from an array.
setDoubles(double[], int, int) - Method in class edu.unh.sdb.common.DoubleDatum
Assigns values to an existing datum by copying a subset of values from an array.
setDoubles(int, double[]) - Method in class edu.unh.sdb.datasource.BasicBlock
Assign attribute values for all points in the block
setDoubles(int, double[]) - Method in class edu.unh.sdb.datasource.CompositeBlock
Assign attribute values for all points in the block
setDoubles(IndexSpaceID, double[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all attributes of the Datum at the specified isid to the values in passed array.
setDoubles(int, double[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set the specified attribute of the Datum at all points to the values in passed attribute array.
setDoublesByAttribute(double[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setDoublesByPoint(double[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setDSName(String) - Method in class edu.unh.sdb.datasource.DataSourceBuilder
Sets the datasource name to the String provided
setEffectiveZeros(float[], int) - Static method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Any component of the normal that is sufficiently small will be set to zero.
setElement(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSArrayStencil
Set the stencil element with index corresponding to id to "active.
setElement(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Set the stencil element with index corresponding to id to "active.
setElement(IndexSpaceID, DataBlock) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Set the stencil element with index corresponding to id to "active", associating the given DataBlock with that element.
setElement(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSListStencil
Set the stencil element with index corresponding to id to "active.
setElement(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DSStencil
Set the stencil element with index corresponding to id to "active.
setElementFromOffset(int) - Method in class edu.unh.sdb.datasource.DSArrayStencil
Set the element corresponding to the 1D offset to be active.
setElementFromOffset(int) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Set the element corresponding to the 1D offset to be active.
setElementFromOffset(int) - Method in class edu.unh.sdb.datasource.DSListStencil
Set the element corresponding to the 1D offset to be active.
setElementFromOffset(int) - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Set the element corresponding to the 1D offset to be active.
setEnumWindow(ISBounds[]) - Method in class edu.unh.sdb.datasource.BlockListCache
set the enum window so that the cache can perform efficient prefetch
setEquation(double, double, double, double) - Method in class edu.unh.sdb.datasource.Plane
 
setErrorReportingLevel(int) - Static method in class edu.unh.sdb.common.SDBError
The Error Reporting Level determines when to raise an exception for an error.
setException(double) - Method in class edu.unh.sdb.common.RangedTypeBuilder
Set the high value for the range
setException(String) - Method in class edu.unh.sdb.common.RangedTypeBuilder
Set the exception value for the range value represented by the argument string
setFDLGroup(FDLGroup[]) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the array of FDLGroup for SplitUnstructuredTopology
setFetchPlane(ISBoundsIterator, double[], int) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Set the iteration space of the 2D plane iterator to correspond to the given 3D iteration step.
setField(int, int, int) - Method in class edu.unh.sdb.datasource.BasicBlock
set a int field value at certain index( index of conceptual datum for an one D array )
setField(int, double, int) - Method in class edu.unh.sdb.datasource.BasicBlock
set a double field value at certain index( index of conceptual datum for an one D array )
setField(int, short, int) - Method in class edu.unh.sdb.datasource.BasicBlock
set a short field value at certain index( index of conceptual datum for an one D array )
setField(int, byte, int) - Method in class edu.unh.sdb.datasource.BasicBlock
set a byte field value at certain index( index of conceptual datum for an one D array )
setField(int, float, int) - Method in class edu.unh.sdb.datasource.BasicBlock
set a float field value at certain index( index of conceptual datum for an one D array )
setField(int, float) - Method in class edu.unh.sdb.datasource.BasicBlock
set a field value, the index is the index of the field in this 1D array
setField(int, float, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
set float data of a given attribute at a given index ( index of the datum in the one D array )
setField(int, int, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
set int data of a given attribute at a given index ( index of the datum in the one D array )
setField(int, double, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
set double data of a given attribute at a given index ( index of the datum in the one D array )
setField(int, short, int) - Method in class edu.unh.sdb.datasource.CompositeBlock
set short data of a given attribute at a given index ( index of the datum in the one D array )
setFieldLayout(int) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Sets the attribute format.
setFileFormat(boolean) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Deprecated.
implied by setChunkedDimensions( isid )
setFileName(String) - Static method in class edu.unh.sdb.datasource.GraniteRemoteClient
Sets the filename for transfer.
setFileName(String) - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
Sets the filename for transfer.
setFileName(String) - Static method in class edu.unh.sdb.datasource.RemoteUDTClient
Sets the filename for transfer.
setFileOffset(long) - Method in class edu.unh.sdb.datasource.BinaryFileDataSource
set the file initial offset
setFileOffset(long) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Sets the file offset
setFileServer(String) - Method in class edu.unh.sdb.datasource.RemoteBFDS
Set remote file server specified by the argument string.
setFirstChildID(int) - Method in class edu.unh.sdb.datasource.ARRSInternalNode
Set first child's id
setFloat(int, float) - Method in class edu.unh.sdb.common.ByteDatum
Set the attribute indicated by the first argument to the value of the second argument.
setFloat(int, float) - Method in class edu.unh.sdb.common.ByteValues
Set the specified entry to the specified value after conversion, if needed.
setFloat(int, float) - Method in class edu.unh.sdb.common.Datum
Set the attribute indicated by the first argument to the value of the second argument.
setFloat(int, float) - Method in class edu.unh.sdb.common.DoubleDatum
Set the attribute indicated by the first argument to the value of the second argument.
setFloat(int, float) - Method in class edu.unh.sdb.common.DoubleValues
Set the specified entry to the specified value after conversion, if needed.
setFloat(int, float) - Method in class edu.unh.sdb.common.FloatDatum
Set the attribute indicated by the first argument to the value of the second argument.
setFloat(int, float) - Method in class edu.unh.sdb.common.FloatValues
Set the specified entry to the specified value after conversion, if needed.
setFloat(int, float) - Method in class edu.unh.sdb.common.IntDatum
Set the attribute indicated by the first argument to the value of the second argument.
setFloat(int, float) - Method in class edu.unh.sdb.common.IntValues
Set the specified entry to the specified value after conversion, if needed.
setFloat(int, float) - Method in class edu.unh.sdb.common.MixedDatum
Set the attribute indicated by the first argument to the value of the second argument.
setFloat(int, float) - Method in class edu.unh.sdb.common.MixedValues
Set the specified entry to the specified value after conversion, if needed.
setFloat(int, float) - Method in class edu.unh.sdb.common.ShortDatum
Set the attribute indicated by the first argument to the value of the second argument.
setFloat(int, float) - Method in class edu.unh.sdb.common.ShortValues
Set the specified entry to the specified value after conversion, if needed.
setFloat(int, float) - Method in class edu.unh.sdb.common.Values
 
setFloat(IndexSpaceID, int, float) - Method in class edu.unh.sdb.datasource.DataBlock
For the position of the 1st argument, set the attribute specified by the 2nd argument to the value of the 3rd argument.
setFloats(float[]) - Method in class edu.unh.sdb.common.Datum
Copy the values in the argument array to this datum.
setFloats(float[], int) - Method in class edu.unh.sdb.common.Datum
Copy the values in the argument array to this datum.
setFloats(float[], int, int) - Method in class edu.unh.sdb.common.Datum
Assigns values to an existing datum by copying a subset of values from an array.
setFloats(float[], int, int) - Method in class edu.unh.sdb.common.FloatDatum
Assigns values to an existing datum by copying a subset of values from an array.
setFloats(float[]) - Method in class edu.unh.sdb.datasource.BasicBlock
set the entire attribute array block to the passed argument.
setFloats(int, float[]) - Method in class edu.unh.sdb.datasource.BasicBlock
Assign attribute values for all points in the block
setFloats(int, float[]) - Method in class edu.unh.sdb.datasource.CompositeBlock
Assign attribute values for all points in the block
setFloats(IndexSpaceID, float[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all attributes of the Datum at the specified isid to the values in passed array.
setFloats(int, float[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set the specified attribute of the Datum at all points to the values in passed attribute array.
setFloatsByAttribute(float[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setFloatsByPoint(float[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setFromMatrix(Matrix4d) - Method in class edu.unh.sdb.common.EulerAngles
 
setFromMatrix(Matrix4d) - Method in class edu.unh.sdb.common.EulerAnglesYXZ
Sets this EulerAngles object from the matrix m.
setFromMatrix(Matrix4d) - Method in class edu.unh.sdb.common.EulerAnglesZYX
 
setGBounds(GBounds, String) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the geometry bounds
setGeometryType(int, String) - Method in class edu.unh.sdb.lattice.LatticeBuilder
 
setGoodScanConversionOrder(boolean) - Static method in class edu.unh.sdb.datasource.Slice
 
setHeading(double) - Method in class edu.unh.sdb.common.EulerAngles
 
setHigh(double) - Method in class edu.unh.sdb.common.RangedTypeBuilder
Set the high value for the range
setHigh(String) - Method in class edu.unh.sdb.common.RangedTypeBuilder
Set the high value for the range value represented by the argument string
setHighIndex(int) - Method in class edu.unh.sdb.datasource.IndexBlock
Set low index
setID(int) - Method in class edu.unh.sdb.datasource.ARRSNode
Set the node ID value for an ARRS node
setIndex(int) - Method in class edu.unh.sdb.lattice.CellID
 
setIndexBlock(IndexBlock) - Method in class edu.unh.sdb.datasource.ARRSCopyLeafNode
Set an IndexBlock
setIndexBlockBounds(ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCopyLeafNode
Set the index block bounds
setIndexData(DataCollection, int, int) - Method in class edu.unh.sdb.datasource.ARRSCopyDataBlock
setIndexPDS
setIndexFile(String) - Method in class edu.unh.sdb.ARRSTreeBuilder.ARCellParser
 
setInput(InputStream) - Method in class edu.unh.sdb.ARRSTreeBuilder.ARCellParser
 
setInput(String) - Method in class edu.unh.sdb.ARRSTreeBuilder.ARCellParser
 
setInputFileName(String) - Method in class edu.unh.sdb.common.XMLReader
sets the input file name to the string argument passed
setInsideColor(byte[]) - Method in class edu.unh.sdb.datasource.Slice
Sets the color for the texture inside the bounds of the slice projection
setInt(int, int) - Method in class edu.unh.sdb.common.ByteDatum
Set the attribute indicated by the first argument to the value of the second argument.
setInt(int, int) - Method in class edu.unh.sdb.common.ByteValues
Set the specified entry to the specified value after conversion, if needed.
setInt(int, int) - Method in class edu.unh.sdb.common.Datum
Set the attribute indicated by the first argument to the value of the second argument.
setInt(int, int) - Method in class edu.unh.sdb.common.DoubleDatum
Set the attribute indicated by the first argument to the value of the second argument.
setInt(int, int) - Method in class edu.unh.sdb.common.DoubleValues
Set the specified entry to the specified value after conversion, if needed.
setInt(int, int) - Method in class edu.unh.sdb.common.FloatDatum
Set the attribute indicated by the first argument to the value of the second argument.
setInt(int, int) - Method in class edu.unh.sdb.common.FloatValues
Set the specified entry to the specified value after conversion, if needed.
setInt(int, int) - Method in class edu.unh.sdb.common.IntDatum
Set the attribute indicated by the first argument to the value of the second argument.
setInt(int, int) - Method in class edu.unh.sdb.common.IntValues
Set the specified entry to the specified value after conversion, if needed.
setInt(int, int) - Method in class edu.unh.sdb.common.MixedDatum
Set the attribute indicated by the first argument to the value of the second argument.
setInt(int, int) - Method in class edu.unh.sdb.common.MixedValues
Set the specified entry to the specified value after conversion, if needed.
setInt(int, int) - Method in class edu.unh.sdb.common.ShortDatum
Set the attribute indicated by the first argument to the value of the second argument.
setInt(int, int) - Method in class edu.unh.sdb.common.ShortValues
Set the specified entry to the specified value after conversion, if needed.
setInt(int, int) - Method in class edu.unh.sdb.common.Values
 
setInt(IndexSpaceID, int, int) - Method in class edu.unh.sdb.datasource.DataBlock
For the position of the 1st argument, set the attribute specified by the 2nd argument to the value of the 3rd argument.
setInts(int[]) - Method in class edu.unh.sdb.common.Datum
Copy the values in the argument array to this datum.
setInts(int[], int) - Method in class edu.unh.sdb.common.Datum
Copy the values in the argument array to this datum.
setInts(int[], int, int) - Method in class edu.unh.sdb.common.Datum
Assigns values to an existing datum by copying a subset of values from an array.
setInts(int[]) - Method in class edu.unh.sdb.common.IntDatum
set all Attribute values with one array.
setInts(int, int[]) - Method in class edu.unh.sdb.datasource.BasicBlock
Assign attribute values for all points in the block
setInts(int, int[]) - Method in class edu.unh.sdb.datasource.CompositeBlock
Assign attribute values for all points in the block
setInts(IndexSpaceID, int[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all attributes of the Datum at the specified isid to the values in passed array.
setInts(int, int[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set the specified attribute of the Datum at all points to the values in passed attribute array.
setIntsByAttribute(int[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setIntsByPoint(int[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setISBounds(ISBounds, String) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the topology bounds
setIterationBounds(ISBounds) - Method in class edu.unh.sdb.datasource.LRUCacheDataSource
 
setIterationSubvolume(ISBounds) - Method in class edu.unh.sdb.datasource.DynamicChunking
If the application specifies the iteration subvolume, the block table is set to cover only the subvolume not the entire dataset.
setIterator(RandomBlockIterator) - Method in class edu.unh.sdb.datasource.BlockListCache
 
setIterator(RandomBlockIterator) - Method in class edu.unh.sdb.datasource.BlockListCacheDataSource
 
setLastChildID(int) - Method in class edu.unh.sdb.datasource.ARRSInternalNode
Set last child's id
setLeastSignificantAxis(int) - Method in class edu.unh.sdb.datasource.AxisOrdering
Sets the Least Significant Axis to the given value by swapping the prior position of the argument axis with the prior Least Significant Axis.
setLevel(int) - Method in class edu.unh.sdb.lattice.MRLattice
 
setLow(double) - Method in class edu.unh.sdb.common.RangedTypeBuilder
Set the low value for the range to the argument value
setLow(String) - Method in class edu.unh.sdb.common.RangedTypeBuilder
Set the low value for the range value represented by the argument string
setLower(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Set the lower bounds to the coordinates represented by the IndexSpaceID argument.
setLower(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Set the lower bounds to the coordinates represented by the integer array argument.
setLower(int, int) - Method in class edu.unh.sdb.datasource.ISBounds
set the lower bounds of a given axis specified in the argument "this" is returned for convenience of use.
setLower(Point) - Method in class edu.unh.sdb.lattice.GBounds
Set the lower bounds to the coordinates represented by the Point argument.
setLower(float[]) - Method in class edu.unh.sdb.lattice.GBounds
Set the lower bounds to the coordinates represented by the integer array argument.
setLowIndex(int) - Method in class edu.unh.sdb.datasource.IndexBlock
Set low index
setMaxBufferSize(int) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
set the maximum length, in bytes, of the buffer used directly with file I/O operations.
setMaxGapSize(long) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
gap means the number of extra data, the datasource willing to read to elimilate a read operation.
setMaxLv(int) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
setMemory(long) - Method in class edu.unh.sdb.datasource.DynamicChunking
 
setMetadata(Metadata) - Method in class edu.unh.sdb.common.MetadataCollection
Adds the specified Metadata object to this collection, using its name as the hashmap key.
setMetadata(MetadataCollection) - Method in class edu.unh.sdb.datasource.FDLDescriptor
sets this object's MetadataCollection object
setMetadataCollection(MetadataCollection) - Method in class edu.unh.sdb.datasource.DataSource
Sets the MetadataCollection associated with this DataSource's FDLDescriptor.
setMostSignificantAxis(int) - Method in class edu.unh.sdb.datasource.AxisOrdering
Chnages this axisOrdering so that the Most Significant Axis is the axis specified by the argument by swapping the prior position of the argument axis with the prior Most Significant Axis.
setName(String) - Method in class edu.unh.sdb.common.Metadata
Sets the name of this Metadata object.
setName(String) - Method in class edu.unh.sdb.common.TypeBuilder
Sets the name to the String provided
setName(String) - Method in class edu.unh.sdb.common.UserTypeBuilder
Sets the name to the String provided
setName(String) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the lattice name to the String provided
setNodePath(int[]) - Method in class edu.unh.sdb.datasource.ARRSNode
Set the path value for an ARRS node
setNull(int) - Method in class edu.unh.sdb.common.DoubleDatum
Set the field specified by the argument to null.
setNull(int) - Method in class edu.unh.sdb.common.FloatDatum
Set the field specified by the argument to null.
setNumCells(int) - Method in class edu.unh.sdb.lattice.CellGroup
 
setOrder(ByteBuffer) - Method in class edu.unh.sdb.datasource.ChunkedDataSource
set the byte order for the given buffer
setOutsideColor(byte[]) - Method in class edu.unh.sdb.datasource.Slice
Sets the color for the texture ouside the bounds of the slice projection
setPartitionID(IndexSpaceID) - Method in class edu.unh.sdb.lattice.CellID
 
setPartitioning(ISBounds) - Method in class edu.unh.sdb.datasource.ISPartitioning
Define the partitioning from an ISBounds.
setPartitionListFromBytes(byte[]) - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Set the partition list according to the data found in the given array of bytes.
setPartitionRatio(IndexSpaceID) - Method in class edu.unh.sdb.datasource.DynamicChunking
 
setPartitionShape(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISPartitioning
Define the partitioning by defining the shape of each partition
setPath(int[]) - Method in class edu.unh.sdb.datasource.ARRSCellID
Set the path of a cell in a ARRS tree
setPath(int[]) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Set the path of an uniform cell datasource in a ARRS tree
setPath(int[]) - Method in class edu.unh.sdb.datasource.URCellBlock
Set the path of a uniform region cell block in a ARRS tree
setPitch(double) - Method in class edu.unh.sdb.common.EulerAngles
 
setPlane(Plane) - Method in class edu.unh.sdb.datasource.Slice
Specifies the plane we want to intersect with the volume
setPointData(DataCollection) - Method in class edu.unh.sdb.datasource.ARRSCopyDataBlock
setPointPDS
setPointDataBlock(DataBlock) - Method in class edu.unh.sdb.datasource.URCellBlock
Set a point data block to a uniform cell block
setPointDS(DataSource) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Set the point datasource
setPointDS(DataSource) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Set the point datasource
setPointInfoFDLFileName(String) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the FDL File name for SplitUnstructuredTopology
setProperty(String, String) - Method in class edu.unh.sdb.common.Metadata
Sets the property with given key to the given value.
setRatios(double, double, double) - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
setRatioX(double) - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
setRatioY(double) - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
setRatioZ(double) - Method in class edu.unh.sdb.datasource.TransferFunction.Block
 
setRecordDescriptor(RecordDescriptor) - Method in class edu.unh.sdb.datasource.DataCollection
Set the DataSource RecordDescriptor to a copy of the argument.
setRecordSize(int) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Sets the Record Size (not used)
setRegionData() - Method in class edu.unh.sdb.datasource.ARRSCopyLeafNode
Set an uniform region cell data
setRegionData() - Method in class edu.unh.sdb.datasource.ARRSLeafNode
Set an uniform region cell data
setRemoteDataSource(String, String) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
set the xml file for the remote datasource.
setRemoteDataSource(String, String) - Method in class edu.unh.sdb.datasource.RemoteBFDS
set the xml file for the remote datasource
setRemoteDataSource(String, String) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
set the xml file for the remote datasource.
setRemoteDataSource(String, String) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
set the xml file for the remote datasource.
setRod(ByteBuffer, int, int, int, FieldIDMapper, RecordDescriptor) - Method in class edu.unh.sdb.datasource.BasicBlock
given a rod of data ( byte buffer), copy the specified field into the corresponding location in the BasicBlock, dstBlock is considered as compositeBlock, the srcBlock is the componentBlock
setRod(ByteBuffer, int, int, int, RecordSpec, RecordDescriptor) - Method in class edu.unh.sdb.datasource.BasicBlock
given a rod of data ( byte buffer), copy the specified field in corresponding location in the BasicBlock, dstBlock is considered as composite , the srcBlock is the component
setrod(ByteBuffer, int, int, int, FieldIDMapper, RecordDescriptor) - Method in class edu.unh.sdb.datasource.CompositeBlock
set a rod of data in the corresponding location of this datablock
setrod(ByteBuffer, int, int, int, RecordSpec, RecordDescriptor) - Method in class edu.unh.sdb.datasource.CompositeBlock
set a rod of data in the corresponding location of this datablock
setrod(ByteBuffer, int, int, int, RecordDescriptor) - Method in class edu.unh.sdb.datasource.CompositeBlock
set a rod of data in the corresponding location of this datablock
setRootDirectory(String) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Set the root directory for searching for the data file.
setShape(int[]) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Change the shape of the iteration.
setShort(int, short) - Method in class edu.unh.sdb.common.ByteDatum
Set the attribute indicated by the first argument to the value of the second argument.
setShort(int, short) - Method in class edu.unh.sdb.common.ByteValues
Set the specified entry to the specified value after conversion, if needed.
setShort(int, short) - Method in class edu.unh.sdb.common.Datum
Set the attribute indicated by the first argument to the value of the second argument.
setShort(int, short) - Method in class edu.unh.sdb.common.DoubleDatum
Set the attribute indicated by the first argument to the value of the second argument.
setShort(int, short) - Method in class edu.unh.sdb.common.DoubleValues
Set the specified entry to the specified value after conversion, if needed.
setShort(int, short) - Method in class edu.unh.sdb.common.FloatDatum
Set the attribute indicated by the first argument to the value of the second argument.
setShort(int, short) - Method in class edu.unh.sdb.common.FloatValues
Set the specified entry to the specified value after conversion, if needed.
setShort(int, short) - Method in class edu.unh.sdb.common.IntDatum
Set the attribute indicated by the first argument to the value of the second argument.
setShort(int, short) - Method in class edu.unh.sdb.common.IntValues
Set the specified entry to the specified value after conversion, if needed.
setShort(int, short) - Method in class edu.unh.sdb.common.MixedDatum
Set the attribute indicated by the first argument to the value of the second argument.
setShort(int, short) - Method in class edu.unh.sdb.common.MixedValues
Set the specified entry to the specified value after conversion, if needed.
setShort(int, short) - Method in class edu.unh.sdb.common.ShortDatum
Set the attribute indicated by the first argument to the value of the second argument.
setShort(int, short) - Method in class edu.unh.sdb.common.ShortValues
Set the specified entry to the specified value after conversion, if needed.
setShort(int, short) - Method in class edu.unh.sdb.common.Values
 
setShort(IndexSpaceID, int, short) - Method in class edu.unh.sdb.datasource.DataBlock
For the position of the 1st argument, set the attribute specified by the 2nd argument to the value of the 3rd argument.
setShortData(byte[]) - Method in class edu.unh.sdb.datasource.DSBlockStencil
Populate the active elements (Datablocks) of this stencil with the data found in the given array.
setShorts(short[]) - Method in class edu.unh.sdb.common.Datum
Copy the values in the argument array to this datum.
setShorts(short[], int) - Method in class edu.unh.sdb.common.Datum
Copy the values in the argument array to this datum.
setShorts(short[], int, int) - Method in class edu.unh.sdb.common.Datum
Assigns values to an existing datum by copying a subset of values from an array.
setShorts(short[], int, int) - Method in class edu.unh.sdb.common.DoubleDatum
Assigns values to an existing datum by copying a subset of values from an array.
setShorts(short[], int, int) - Method in class edu.unh.sdb.common.ShortDatum
Assigns values to an existing datum by copying a subset of values from an array.
setShorts(int, short[]) - Method in class edu.unh.sdb.datasource.BasicBlock
Assign attribute values for all points in the block
setShorts(int, short[]) - Method in class edu.unh.sdb.datasource.CompositeBlock
Assign attribute values for all points in the block
setShorts(IndexSpaceID, short[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all attributes of the Datum at the specified isid to the values in passed array.
setShorts(int, short[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set the specified attribute of the Datum at all points to the values in passed attribute array.
setShortsByAttribute(short[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setShortsByPoint(short[]) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setSibling(int) - Method in class edu.unh.sdb.datasource.ARRSNode
Set the sibling value
setSource(DataSource) - Method in class edu.unh.sdb.datasource.RandomBlockIterator
Set the iteration data source
setSpaceBounds(ISBounds) - Method in class edu.unh.sdb.datasource.ISIterator
Deprecated.
Use setBounds( ISBounds )
setSpaceBounds(ISBounds) - Method in class edu.unh.sdb.datasource.ISPartitioning
Define the space bounds for the partitioning.
setSparseBlockMap(String[]) - Method in class edu.unh.sdb.datasource.FDLDescriptor
sets this object's sparse block mapping info
setSPCacheBlocks(boolean) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Indicate to this iterator whether the underlying cache has blocks shaped according to the plane normal.
setSPCacheBlocks(boolean) - Method in interface edu.unh.sdb.datasource.ObliquePlaneIteratorInterface
Indicate to this iterator whether the underlying cache has blocks shaped according to the plane normal.
setSPCacheBlocks(boolean) - Method in class edu.unh.sdb.datasource.SliceIterator
 
setStartLv(int) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
setStep(double) - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
setSteps(int[]) - Method in class edu.unh.sdb.datasource.ISIterator
Define a new steps array for the iterator
setStorageType(String) - Method in class edu.unh.sdb.common.UserTypeBuilder
Sets the base storage type given the string name of the type within the TypeTable.
setStorageType(int) - Method in class edu.unh.sdb.common.UserTypeBuilder
Sets the base storage type given the integer value of the type within the TypeTable.
setSubBounds(ISBounds) - Method in class edu.unh.sdb.datasource.ARRSClippedCopyLeafNode
Set a subbounds
setToBoundingVolume(ISBounds) - Method in class edu.unh.sdb.datasource.ISBounds
Updates this ISBounds object to be the bounding volume of this ISBounds and the parameter ISBounds.
setTopologyDS(DataSource) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the rood datasource
setTopologyType(int) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the topology type for this Lattice
setTransferFunction(TransferFunction) - Method in class edu.unh.sdb.datasource.Slice
Specifies how do we convert the Datum read from the file into a rgba tupple.
setTypes(TypeTable) - Method in class edu.unh.sdb.common.RecordDescriptorBuilder
Sets the type table.
setupAndCheck(int[], int[]) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
 
setUpper(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISBounds
Set the upper bounds to the coordinates represented by the IndexSpaceID argument.
setUpper(int[]) - Method in class edu.unh.sdb.datasource.ISBounds
Set the upper bounds to the coordinates represented by the integer array argument.
setUpper(int, int) - Method in class edu.unh.sdb.datasource.ISBounds
Set the upper bounds of a given axis specified in the argument "this" is returned for convenience of use.
setUpper(Point) - Method in class edu.unh.sdb.lattice.GBounds
Set the upper bounds to the coordinates represented by the Point argument.
setUpper(float[]) - Method in class edu.unh.sdb.lattice.GBounds
Set the upper bounds to the coordinates represented by the integer array argument.
setValues(Values) - Method in class edu.unh.sdb.common.ByteValues
Assign the data from the argument Values object to this object.
setValues(int, Values) - Method in class edu.unh.sdb.common.ByteValues
Assign elements of the passed in Values object to this one beginning at the start index .
setValues(Values) - Method in class edu.unh.sdb.common.DoubleValues
Assign the data from the argument Values object to this object.
setValues(int, Values) - Method in class edu.unh.sdb.common.DoubleValues
Assign elements of the passed in Values object to this one beginning at the start index .
setValues(Values) - Method in class edu.unh.sdb.common.FloatValues
Assign the data from the argument Values object to this object.
setValues(int, Values) - Method in class edu.unh.sdb.common.FloatValues
Assign elements of the passed in Values object to this one beginning at the start index .
setValues(Values) - Method in class edu.unh.sdb.common.IntValues
Assign the data from the argument Values object to this object.
setValues(int, Values) - Method in class edu.unh.sdb.common.IntValues
Assign elements of the passed in Values object to this one beginning at the start index .
setValues(Values) - Method in class edu.unh.sdb.common.MixedValues
Assign the data from the argument Values object to this object.
setValues(int, Values) - Method in class edu.unh.sdb.common.MixedValues
Assign elements of the passed in Values object to this one beginning at the start index .
setValues(Values) - Method in class edu.unh.sdb.common.ShortValues
Assign the data from the argument Values object to this object.
setValues(int, Values) - Method in class edu.unh.sdb.common.ShortValues
Assign elements of the passed in Values object to this one beginning at the start index .
setValues(Values) - Method in class edu.unh.sdb.common.Values
Assign the data from the argument Values object to this object.
setValues(int, Values) - Method in class edu.unh.sdb.common.Values
Assign elements of the passed in Values object to this one beginning at the start index .
setValues(Values) - Method in class edu.unh.sdb.datasource.BasicBlock
Set all values at once.
setValues(int, Values) - Method in class edu.unh.sdb.datasource.BasicBlock
Assign attribute values for all points in the block
setValues(int, Values) - Method in class edu.unh.sdb.datasource.CompositeBlock
Assign attribute values for all points in the block
setValues(int, Values) - Method in class edu.unh.sdb.datasource.DataBlock
Set the specified attribute of the Datum at all points to the values in passed Values object.
setValues(Values) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setValuesByAttribute(Values) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setValuesByPoint(Values) - Method in class edu.unh.sdb.datasource.DataBlock
Set all the attributes of all points in the block.
setVerbose(boolean) - Method in class edu.unh.sdb.mdb.DBIF
the default state for verbose is false
setVertexCoords(Point[]) - Method in class edu.unh.sdb.lattice.Cell
 
setVertexIndicesRecordSpec(RecordSpec) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the vertexIndicesRecordSpec for SplitUnstructuredTopology
setVertical(Vector3d) - Method in class edu.unh.sdb.datasource.Slice
Specifies a vector in the intersection plane.
setVIndicesFDLFileName(String) - Method in class edu.unh.sdb.lattice.LatticeBuilder
Sets the FDL File name for SplitUnstructuredTopology
setVolume(Volume) - Method in class edu.unh.sdb.datasource.Slice
Specifies the volume we iterate over
setWindowSize(int) - Method in class edu.unh.sdb.datasource.RandomBlockIterator
set the enumberation window size
shadeVoxel(DataBlock, IndexSpaceID, DataBlock, IndexSpaceID, Vector3d, Vector3d, double) - Method in class edu.unh.sdb.datasource.TransferFunction
 
shadeVoxel(DataBlock, IndexSpaceID, int, Vector3d, Vector3d, double) - Static method in class edu.unh.sdb.datasource.TransferFunction
 
shadeVoxels(DataBlock, ISBounds, DataBlock, Vector3d, Vector3d, double) - Method in class edu.unh.sdb.datasource.TransferFunction
 
shape - Variable in class edu.unh.sdb.datasource.ISBoundsIterator
 
shift(IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Pairwise shift this IndexSpaceID with 'other' and store the result in this.
shiftDirections - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
shiftTotals - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
Short - Static variable in class edu.unh.sdb.common.StorageType
 
ShortDatum - Class in edu.unh.sdb.common
Represent multiple data values for a single point.
ShortDatum(int) - Constructor for class edu.unh.sdb.common.ShortDatum
Creates a null datum with the specified number of values.
ShortDatum(short) - Constructor for class edu.unh.sdb.common.ShortDatum
Deprecated. 
ShortDatum(short[]) - Constructor for class edu.unh.sdb.common.ShortDatum
Creates a datum with attributes containing the argument values.
ShortDatum(short[], int, int) - Constructor for class edu.unh.sdb.common.ShortDatum
Deprecated.
Not really deprecated. Just looking for usage. specifies the datum index of the datum to be copied, where all datums in the array are assumed to be of the same length.
ShortDatum(int[]) - Constructor for class edu.unh.sdb.common.ShortDatum
Creates a datum with attributes containing the argument values.
ShortDatum(ShortDatum) - Constructor for class edu.unh.sdb.common.ShortDatum
Copy Constructor creates a copy of the argument datum.
ShortDatum(Datum) - Constructor for class edu.unh.sdb.common.ShortDatum
Copy Constructor creates a copy of the argument datum.
ShortDatum(ShortDatum[]) - Constructor for class edu.unh.sdb.common.ShortDatum
This constructor creates a single ShortDatum from an array of datums.
ShortValues - Class in edu.unh.sdb.common
ShortValues store shorts in a 1 D short array
ShortValues() - Constructor for class edu.unh.sdb.common.ShortValues
construct a ShortValues with no data
ShortValues(short[]) - Constructor for class edu.unh.sdb.common.ShortValues
construct a ShortValues for a given short array
ShortValues(int) - Constructor for class edu.unh.sdb.common.ShortValues
construct a ShortValues for a given short array with the given number of shorts.
shortValues() - Method in class edu.unh.sdb.common.ShortValues
Return a reference to the short data array this object contains.
shouldThrowException() - Method in class edu.unh.sdb.common.SDBError
Returns true if this instance of SDBError should throw an exception.
show(String) - Method in class edu.unh.sdb.mdb.DBIF
For debugging, print out the table content
showAll() - Method in class edu.unh.sdb.mdb.DBIF
 
shrinkByFactor(int) - Method in class edu.unh.sdb.datasource.ISBounds
Modifies this ISBounds with upper and lower coordinates that have been reduced by a given multiple.
siblingId - Variable in class edu.unh.sdb.datasource.ARRSNode
 
SIMPLE_TYPE - Static variable in class edu.unh.sdb.datasource.XTDLReader
denotes a simple UserType
size() - Method in class edu.unh.sdb.common.ByteDatum
Return the number of attributes in the datum.
size() - Method in class edu.unh.sdb.common.ByteValues
return the size of the 1 D array, in which the data is stored ( number of bytes)
size() - Method in class edu.unh.sdb.common.Datum
Return the number of attributes in the datum.
size() - Method in class edu.unh.sdb.common.DoubleDatum
Return the number of attributes in the datum.
size() - Method in class edu.unh.sdb.common.DoubleValues
return the size of the 1 D array, in which the data is stored
size() - Method in class edu.unh.sdb.common.FieldIDMapper
Returns the number of fields.
size() - Method in class edu.unh.sdb.common.FloatDatum
Return the number of attributes in the datum.
size() - Method in class edu.unh.sdb.common.FloatValues
retrun the size of the 1 D array, in which the data is stored
size() - Method in class edu.unh.sdb.common.IntDatum
Return the number of attributes in the datum.
size() - Method in class edu.unh.sdb.common.IntValues
retrun the size of the 1 D array, in which the data is stored
size() - Method in class edu.unh.sdb.common.MixedDatum
Return the number of attributes in the datum.
size() - Method in class edu.unh.sdb.common.MixedValues
return the size of the 1 D array, in which the data is stored ( number of bytes)
size() - Method in class edu.unh.sdb.common.RecordDescriptor
Return the number of Attributes in this collection.
size() - Method in class edu.unh.sdb.common.RecordSpec
Returns the number of FieldIDs in the RecordSpec.
size() - Method in class edu.unh.sdb.common.ShortDatum
Return the number of attributes in the datum.
size() - Method in class edu.unh.sdb.common.ShortValues
return the size of the 1 D array, in which the data is stored
size() - Method in class edu.unh.sdb.common.TypeTable
Return the number of types stored in the TypeTable.
size() - Method in class edu.unh.sdb.common.Values
 
size() - Method in class edu.unh.sdb.datasource.ARBlock
Deprecated.
Return the number of elements in the datablock.
size() - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Deprecated.
Use volume instead
size - Variable in class edu.unh.sdb.datasource.BlockManager
 
size() - Method in class edu.unh.sdb.datasource.BlockManager
Return the number of components within this BlockManager
size() - Method in class edu.unh.sdb.datasource.DataBlockCollection
 
size() - Method in class edu.unh.sdb.datasource.DataCollection
Deprecated.
Use volume() method.
size() - Method in class edu.unh.sdb.datasource.DataSourceCollection
Returns the number of elements stored this DataSource collection as an integer
size - Variable in class edu.unh.sdb.datasource.DSArrayStencil
 
size() - Method in class edu.unh.sdb.datasource.DSArrayStencil
return number of active elements contained by this stencil
size - Variable in class edu.unh.sdb.datasource.DSBlockStencil
 
size() - Method in class edu.unh.sdb.datasource.DSBlockStencil
return number of active elements contained by this stencil
size() - Method in class edu.unh.sdb.datasource.DSListStencil
return number of element contained by this stencil
size() - Method in class edu.unh.sdb.datasource.DSStencil
return number of elements contained by this stencil
size() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Deprecated.
Use volume()
size() - Method in class edu.unh.sdb.datasource.RectCellBlock
Deprecated.
use volume() instead Size of the CellBlock The size is the size of the volume it represents in points.
size() - Method in class edu.unh.sdb.datasource.VRDataBlock
Deprecated.
Use volume instead
size() - Method in class edu.unh.sdb.lattice.LatticeCollection
Returns the number of elements stored this Lattice collection as an integer
slash - Variable in class edu.unh.sdb.common.Configuration
 
slice(int, int) - Method in class edu.unh.sdb.datasource.ISBounds
Returns a new ISBounds which is a slice of this ISBounds of thickness 1 in a plane orthogonal to the specified axis, having the given coordinate value for that axis.
Slice - Class in edu.unh.sdb.datasource
A class that knows how to read data for the intersection between a Volume over a DataSource and a Plane.
Slice(byte[], byte[], Volume, Plane, DataSource) - Constructor for class edu.unh.sdb.datasource.Slice
Creates a new instance of Slice and sets its parameters
sliceAxis - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
sliceCacheIOThread - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
SliceIterator - Class in edu.unh.sdb.datasource
It allows to 'iterate' a Slice along is normal vector, calculating the intersection with a Volume and reading data from a DataSource to fill that intersection.
SliceIterator(byte[], byte[], Volume, Plane, DataSource, double) - Constructor for class edu.unh.sdb.datasource.SliceIterator
 
SliceUtil - Class in edu.unh.sdb.datasource
Utility functions for use in Slice.
SliceUtil() - Constructor for class edu.unh.sdb.datasource.SliceUtil
 
sortArray - Variable in class edu.unh.sdb.datasource.BlockManager
 
source_dc - Variable in class edu.unh.sdb.datasource.VRIndexable
 
sourceQueryBounds - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
sourceQueryBounds - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
space - Variable in class edu.unh.sdb.datasource.DSStencil
 
spaceBnds - Variable in class edu.unh.sdb.datasource.ISBoundsIterator
 
spaceBounds - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
spaceDimensionality - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
SpaceID - Class in edu.unh.sdb.common
This is a base class for all identifiers that are indices into a dimensional space.
SpaceID() - Constructor for class edu.unh.sdb.common.SpaceID
 
spaceISID - Variable in class edu.unh.sdb.datasource.RegularPartitionISID
 
spaceLocation - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
spaceLowerBounds - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
spacePartitioning - Variable in class edu.unh.sdb.datasource.BlockCache
 
spacePartitioningOrdering - Variable in class edu.unh.sdb.datasource.BlockCache
 
spaceShape - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
spaceUpperBounds - Variable in class edu.unh.sdb.datasource.ISPartitioning
 
SparseDataSource - Class in edu.unh.sdb.datasource
Implements a data source that only contains data for a subset of its bounds.
SparseDataSource(String, FDLDescriptor) - Constructor for class edu.unh.sdb.datasource.SparseDataSource
This is the mechanism for creating a sparse ds from an xfdl file, but it is not normally used by an app, which should use Datasource.create, which calls this method.
SparseDataSource.MapInfo - Class in edu.unh.sdb.datasource
 
sparseMapData - Variable in class edu.unh.sdb.datasource.FDLDescriptor
Holds the information for mapping blocks in a sparse data source
spawn() - Method in class edu.unh.sdb.common.ByteValues
create a copy of this object
spawn(int, int, int) - Method in class edu.unh.sdb.common.ByteValues
Create a new instance of ByteValues with a subsest of the data in this object.
spawn() - Method in class edu.unh.sdb.common.DoubleValues
create a copy of this object
spawn(int, int, int) - Method in class edu.unh.sdb.common.DoubleValues
Create a new instance of DoubleValues with a subsest of the data in this object.
spawn() - Method in class edu.unh.sdb.common.FloatValues
create a copy of this object
spawn(int, int, int) - Method in class edu.unh.sdb.common.FloatValues
Create a new instance of FloatValues with a subsest of the data in this object.
spawn() - Method in class edu.unh.sdb.common.IntValues
create a copy of this object
spawn(int, int, int) - Method in class edu.unh.sdb.common.IntValues
Create a new instance of IntValues with a subsest of the data in this object.
spawn() - Method in class edu.unh.sdb.common.MixedValues
create a copy of this object
spawn(int, int, int) - Method in class edu.unh.sdb.common.MixedValues
Create a new instance of MixedValues with a subsest of the data in this object.
spawn() - Method in class edu.unh.sdb.common.ShortValues
create a copy of this object
spawn(int, int, int) - Method in class edu.unh.sdb.common.ShortValues
Create a new instance of ShortValues with a subsest of the data in this object.
spawn() - Method in class edu.unh.sdb.common.Values
create a new copy of this Values class, but NO data is copied
spawn(int, int, int) - Method in class edu.unh.sdb.common.Values
create a new instance of this Values class; copy a subset of the data to new.
spawn(int, int) - Method in class edu.unh.sdb.common.Values
Create a new instance of ShortValues with a subsest of the data in this object.
SPBlockShape - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
split(ISBounds, ISBounds, int, int) - Method in class edu.unh.sdb.datasource.ISBounds
The two argument bounds are set to represent two portions of this ISBounds split by a plane orthogonal to the splitAxis, at the coordinate value contained in splitAxisCoord.
SplitCellGroupGrid - Class in edu.unh.sdb.lattice
 
SplitCellGroupGrid(Partitioning, AxisOrdering, String, String, RecordSpec, RecordSpec, RecordSpec) - Constructor for class edu.unh.sdb.lattice.SplitCellGroupGrid
 
SplitUnstructuredTopology - Class in edu.unh.sdb.lattice
 
SplitUnstructuredTopology(String, String, UnstructuredGeometry, int) - Constructor for class edu.unh.sdb.lattice.SplitUnstructuredTopology
 
sQBLowerInts - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
sQBLowerInts - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
sQBUpperInts - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
sQBUpperInts - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
srcRodByteSize - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
srcRodSize - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
start(String, boolean) - Method in class edu.unh.sdb.common.XMLReader
Sets the initial values and calls the parser
start - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
start - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
start - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
startBounds - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
startIteration(Volume) - Method in class edu.unh.sdb.datasource.Plane
 
startPoint - Variable in class edu.unh.sdb.datasource.BDISBoundsIterator
 
startPoint - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
StatsDataSource - Class in edu.unh.sdb.datasource
 
StatsDataSource(String, RecordDescriptor, ISBounds, AxisOrdering, String) - Constructor for class edu.unh.sdb.datasource.StatsDataSource
 
StatsDataSource(FDLDescriptor) - Constructor for class edu.unh.sdb.datasource.StatsDataSource
 
StatsDataSource() - Constructor for class edu.unh.sdb.datasource.StatsDataSource
 
statusFlag - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
statusFlag - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
statusFlag - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
stencil - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
step - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator.IOThread
 
steps - Variable in class edu.unh.sdb.datasource.BasicBlock
 
steps - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
steps - Variable in class edu.unh.sdb.datasource.ISBoundsIterator
 
sToF(String) - Static method in class edu.unh.sdb.common.XMLReader
converts a string to a Float object
sToI(String) - Static method in class edu.unh.sdb.common.XMLReader
converts a string to and Integer object
sToi(String) - Static method in class edu.unh.sdb.common.XMLReader
converts a string to an integer
stoppedPrefetching - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
StorageType - Class in edu.unh.sdb.common
The StorageType class represents the various basic types that are native to Java.
storageType - Variable in class edu.unh.sdb.common.UserType
 
storageType - Variable in class edu.unh.sdb.common.UserTypeBuilder
 
subBasicBlock(BasicBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.PointOrderBFDS
This subblock method will check if gap between two neighboring rods (in data storage order) is smaller than the argument seekcost.
subBasicBlock(BasicBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RemoteBFDS
this method will invoke remote datasource server extract data from the disk, and push it into the java socket
subBasicBlock(BasicBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Note: The BasicBlock is assumed to be created and a valid data array is already allocated.
subBasicBlock(BasicBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Note: The BasicBlock is assumed to be created and a valid data array is already allocated.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.AliasDataSource
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.AliasDataSource
 
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.AliasDataSource
 
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.ARBlock
Get a block of data of the DataSource.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ARBlock
Get a block of data of the DataSource, pass by reference.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ARBlock
Pass by reference subblock method taking FieldIDMapper
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Return a new DataBlock that is a subset of this datablock.
subblock(DataBlock, ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Reads a subblock defined by the specified bounds into the DataBlock argument
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellCopyDS
Return a new DataBlock that is a subset of this datablock.
subblock(DataBlock, ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellCopyDS
Reads a subblock defined by the specified bounds into the DataBlock argument
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Return a new DataBlock that is a subset of this datablock.
subblock(DataBlock, ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Reads a subblock defined by the specified bounds into the DataBlock argument
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Get a block of datums.
subblock(ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Get a block of datums with a subset of all the attributes
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Deprecated. 
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.BasicBlock
this is the old interface, the query bounds is check to ensure correctness
subblock(BasicBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.BasicBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(BasicBlock, ISBounds, ISBounds, RecordSpec, FieldIDMapper) - Method in class edu.unh.sdb.datasource.BasicBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.BasicBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.BasicBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.BlockedDataSource
Get a block of data of the DataSource.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.BlockedDataSource
Get a block of data of the DataSource, pass by reference before this method is called, check to make sure the Dimensionality and dsisb is inside the DataSource's bounds
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.BlockedDataSource
Pass by reference subblock method taking FieldIDMapper
subblock(ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.BlockedDataSource
get the Datablock and fit in a Datablock which may have different size
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.BlockManager
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.BlockManager
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.BlockManager
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.CacheDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.CacheDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ChunkedDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.CompositeBlock
Return a new DataBlock( currently it returns a CompositeBlock) that is a subset of this datablock.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.CompositeBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.CompositeBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.CompositeBlock
the returning DataBlock is a CompositeBlock
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.CompositeBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.DataBlockProxy
 
subblock(DataBlock, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataBlockProxy
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataBlockProxy
 
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.DataCollection
Return a new DataBlock that is a subset of this DataCollection.
subblock(RecordSpec) - Method in class edu.unh.sdb.datasource.DataCollection
Return a new DataBlock that is an attribute projection of this DataCollection based on the attributes as defined by the RecordSpec.
subblock(FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataCollection
Return a new DataBlock that is an attribute projection of this DataCollection based on the attributes as defined by the FieldIDMapper.
subblock(ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.DataCollection
Return a new DataBlock that is a subset of this DataCollection based on bounds and selective attributes as defined by the RecordSpec.
subblock(ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataCollection
Return a new DataBlock that is a subset of this datablock based on bounds and selective attributes as defined by the FieldIDMapper.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.DataCollection
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataCollection
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds) - Method in class edu.unh.sdb.datasource.DataCollection
Reads a subblock defined by srcBounds into the Datablock argument.
subblock(DataBlock, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.DataCollection
Reads a subblock defined by srcBounds into the Datablock argument.
subblock(DataBlock, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DataCollection
Reads a subblock defined by srcBounds into the Datablock argument.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.DataCollection
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DSBlockStencil) - Method in class edu.unh.sdb.datasource.DataCollection
Fill the datablocks specified as "active" in the DSBlockStencil.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.DataSourceServer
 
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Return a new DataBlock that is a subset of this datablock.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.DatumBlock
Deprecated.
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.DynamicChunking
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.DynamicChunking
not implemented
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
 
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.ForeignReferenceDataSource
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DSBlockStencil) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
 
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
Returns a spatial subset of the DataSource as delimited by the ISBounds argument.
subblock(ISBounds) - Method in interface edu.unh.sdb.datasource.Indexable
return a subblock defined by the bounds
subblock(ISBounds, RecordSpec) - Method in interface edu.unh.sdb.datasource.Indexable
return a subbloc defined by the bounds and recordSpec
subblock(ISBounds, FieldIDMapper) - Method in interface edu.unh.sdb.datasource.Indexable
return a subbloc defined by the bounds and a FieldIDMapper
subblock(DataBlock, ISBounds, ISBounds) - Method in interface edu.unh.sdb.datasource.Indexable
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in interface edu.unh.sdb.datasource.Indexable
 
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in interface edu.unh.sdb.datasource.Indexable
 
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.MRDataSource
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.MRDataSource
 
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return a new DataBlock that is a subset of this datablock.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Get a block of data of the DataSource.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Get a block of data of the DataSource, pass by reference before this method is called, check to make sure the Dimensionality and dsisb is inside the DataSource's bounds
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
Pass by reference subblock method taking FieldIDMapper
subblock(ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
get the Datablock and fit in a Datablock which may have different size
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.OverlapBlockManager
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.RayCellIterator
Return a new DataBlock that is a subset of this datablock.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RayCellIterator
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RayCellIterator
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.RayCellIterator
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Return a new DataBlock that is a subset of this datablock.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RegCellDataSource
 
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.RegCellDataSource
 
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RegularGridBlockManager
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDPClient
Returns a spatial subset of the DataSource as delimited by the ISBounds argument.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DSBlockStencil) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
 
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.RemoteUDTClient
Returns a spatial subset of the DataSource as delimited by the ISBounds argument.
subblock(ISBounds) - Method in interface edu.unh.sdb.datasource.Server
 
subblock(DSBlockStencil) - Method in class edu.unh.sdb.datasource.StatsDataSource
 
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.TextFileDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.TextFileDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.TextFileDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.TextFileDataSource
Returns a spatial subset of the DataSource as delimited by the ISBounds argument.
subblock(FloatDatum[], ISBounds) - Method in class edu.unh.sdb.datasource.TextFileDataSource
 
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.URCellBlock
Return a new DataBlock that is a subset of this URCellBlock.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.URCellBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.URCellBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.URCellBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(RecordSpec, ISBounds) - Method in class edu.unh.sdb.datasource.URCellBlock
Return a subblock corresponding to the given RecordSpec and the given ISBounds.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.VRDataBlock
 
subblock(RecordSpec, ISBounds) - Method in class edu.unh.sdb.datasource.VRDataBlock
Deprecated. 
subblock(ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.VRDataBlock
Returns a DataBlock that is an attribute projection of a spatial subset of the DataSource.Override parent method for inefficiency.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.VRDataBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.VRDataBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.VRDataBlock
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(Datum[], ISBounds) - Method in class edu.unh.sdb.datasource.VRDataSource
 
subblock(ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.VRDataSource
Returns a DataBlock that is an attribute projection of a spatial subset of the DataSource.
subblock(ISBounds) - Method in class edu.unh.sdb.datasource.VRDataSource
Returns a DataBlock that is a spatial subset of the DataSource.Override parent method for inefficiency.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.VRDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.VRDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.VRDataSource
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.VRIndexable
Reads a subblock defined by srcBounds into the region of the Datablock argument defined by dstBounds.
subblock(DataBlock, ISBounds, ISBounds, RecordSpec) - Method in class edu.unh.sdb.datasource.VRIndexable
Reads a subblock defined by srcISB into the region of the Datablock argument defined by dstISB.
subblock(DataBlock, ISBounds, ISBounds, FieldIDMapper) - Method in class edu.unh.sdb.datasource.VRIndexable
Reads a subblock defined by srcISB into the region of the Datablock argument defined by dstISB.
subblockQueryBounds - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
subset(RecordSpec) - Method in class edu.unh.sdb.common.ByteDatum
Return a new datum with the attributes indicated by the RecordSpec.
subset(ByteDatum, RecordSpec) - Method in class edu.unh.sdb.common.ByteDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(Datum, RecordSpec) - Method in class edu.unh.sdb.common.ByteDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(RecordSpec) - Method in class edu.unh.sdb.common.Datum
Return a new datum with the attributes indicated by the RecordSpec.
subset(Datum, RecordSpec) - Method in class edu.unh.sdb.common.Datum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(RecordSpec) - Method in class edu.unh.sdb.common.DoubleDatum
Return a new datum with the attributes indicated by the RecordSpec.
subset(DoubleDatum, RecordSpec) - Method in class edu.unh.sdb.common.DoubleDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(Datum, RecordSpec) - Method in class edu.unh.sdb.common.DoubleDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(RecordSpec) - Method in class edu.unh.sdb.common.FloatDatum
Return a new datum with the attributes indicated by the RecordSpec.
subset(FloatDatum, RecordSpec) - Method in class edu.unh.sdb.common.FloatDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(Datum, RecordSpec) - Method in class edu.unh.sdb.common.FloatDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(RecordSpec) - Method in class edu.unh.sdb.common.IntDatum
Return a new datum with the attributes indicated by the RecordSpec.
subset(IntDatum, RecordSpec) - Method in class edu.unh.sdb.common.IntDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(Datum, RecordSpec) - Method in class edu.unh.sdb.common.IntDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(RecordSpec) - Method in class edu.unh.sdb.common.MixedDatum
Return a new datum with the attributes indicated by the RecordSpec.
subset(MixedDatum, RecordSpec) - Method in class edu.unh.sdb.common.MixedDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(Datum, RecordSpec) - Method in class edu.unh.sdb.common.MixedDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(RecordSpec) - Method in class edu.unh.sdb.common.ShortDatum
Return a new datum with the attributes indicated by the RecordSpec.
subset(ShortDatum, RecordSpec) - Method in class edu.unh.sdb.common.ShortDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(Datum, RecordSpec) - Method in class edu.unh.sdb.common.ShortDatum
Copy the attributes specified by the RecordSpec into the argument datum.
subset(RecordDescriptor) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
 
subset(ISBounds) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
 
subset(RecordDescriptor, ISBounds) - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
 
subset(RecordDescriptor) - Method in class edu.unh.sdb.datasource.TextFileDataSource
 
subset(ISBounds) - Method in class edu.unh.sdb.datasource.TextFileDataSource
 
subset(RecordDescriptor, ISBounds) - Method in class edu.unh.sdb.datasource.TextFileDataSource
 
subtract(int, int) - Method in class edu.unh.sdb.datasource.IndexSpaceID
For the specified axis of this IndexSpaceID, subtract specified value.
subtract(IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
For each axis of this IndexSpaceID, subtract the value of the corresponding axis of the parameter.
subtract(IndexSpaceID, IndexSpaceID) - Method in class edu.unh.sdb.datasource.IndexSpaceID
For each axis of this IndexSpaceID, subtract the value of the corresponding axis of the second argument, and assign the result to the first argument.
subtract(Point) - Method in class edu.unh.sdb.lattice.Point
For each axis of this Point, subtract the value of the corresponding axis of the parameter.
subtree - Variable in class edu.unh.sdb.datasource.ARRSCellDataSource
 
sum(int, int) - Method in class edu.unh.sdb.datasource.DataSourceServer
 
sum(int, int) - Method in interface edu.unh.sdb.datasource.Server
read an array of bytes from the remote file server
swap(Object[], int, int) - Static method in class edu.unh.sdb.datasource.SliceUtil
 

T

Table - Class in edu.unh.sdb.mdb
 
Table() - Constructor for class edu.unh.sdb.mdb.Table
 
tag - Variable in class edu.unh.sdb.datasource.CacheDataBlock
 
tagAxisWeights - Variable in class edu.unh.sdb.datasource.BlockCache
 
tagToBounds(long, ISBounds) - Method in class edu.unh.sdb.datasource.BlockCache
Return the bounds of the region in the index space corresponding to the given tag.
tagToPartitioningCoords(long, int[]) - Method in class edu.unh.sdb.datasource.BlockCache
 
tBASETYPE - Static variable in class edu.unh.sdb.mdb.Table
 
TCP - Static variable in class edu.unh.sdb.common.Globals
 
tempCoords - Variable in class edu.unh.sdb.datasource.RegularISPartitioning
 
tempDatum - Variable in class edu.unh.sdb.datasource.BinaryFileDataSource
 
tempDatum - Variable in class edu.unh.sdb.datasource.DSBlockStencil
 
test1() - Static method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Tests AttributeJoinDataSource.
test2(String[]) - Static method in class edu.unh.sdb.datasource.AttributeJoinDataSource
Test AttributeJoinDataSource
testBytes(byte[]) - Method in class edu.unh.sdb.datasource.ChomboRemoteClient
 
TextFileDataSource - Class in edu.unh.sdb.datasource
This class will read from a file of numeric ASCII data, providing an n-dimensional datasource view of that file.
TextFileDataSource(String, RecordDescriptor, ISBounds, AxisOrdering, String) - Constructor for class edu.unh.sdb.datasource.TextFileDataSource
 
theBlock - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
TheClient() - Static method in class edu.unh.sdb.datasource.RemoteUDPClient
File transfer client program.
theData - Variable in class edu.unh.sdb.datasource.TextFileDataSource
 
thePoints - Variable in class edu.unh.sdb.lattice.UnstructuredTopology
 
theRegionData - Variable in class edu.unh.sdb.datasource.ARRSLeafNode
 
theSource - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
theTriangles - Variable in class edu.unh.sdb.lattice.UnstructuredTopology
 
threaded - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
ThreadedBlockCacheDataSource - Class in edu.unh.sdb.datasource
The ThreadedBlockCacheDataSource provides cache service for an underlying datasource.
ThreadedBlockCacheDataSource(String, DataSource, ISBounds, IndexSpaceID, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ThreadedBlockCacheDataSource
Create a ThreadedBlockCacheDataSource with a single CacheBlock connected to the DataSource argument.
ThreadedBlockCacheDataSource(String, DataSource, IndexSpaceID, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ThreadedBlockCacheDataSource
Create a ThreadedBlockCacheDataSource with a single CacheBlock connected to the DataSource argument.
ThreadedSliceCache - Class in edu.unh.sdb.datasource
This cache is meant for use with slice iteration, and performs active prefetching using a separate IO thread.
ThreadedSliceCache(Indexable, int, IndexSpaceID, ISBounds, AxisOrdering) - Constructor for class edu.unh.sdb.datasource.ThreadedSliceCache
 
ThreadedSliceCache.SliceCacheIOThread - Class in edu.unh.sdb.datasource
 
ThreadedSliceCacheDataSource - Class in edu.unh.sdb.datasource
 
ThreadedSliceCacheDataSource(String, DataSource, ISBounds, int, IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.ThreadedSliceCacheDataSource
Creates a ThreadedSliceCacheDataSource that caches the specified DataSource.
ThreadedSliceCacheDataSource(String, DataSource, int, IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.ThreadedSliceCacheDataSource
Creates a ThreadedSliceCacheDataSource that caches the specified DataSource.
throwerIndex - Variable in class edu.unh.sdb.common.SDBError
 
ThrowFatalOnly - Static variable in class edu.unh.sdb.common.SDBError
 
times - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
TimeSeries - Class in edu.unh.sdb.datasource
This class encapsulates time series data without imposing a particular data access interface on the series itself.
TimeSeries(String, String) - Constructor for class edu.unh.sdb.datasource.TimeSeries
Create a time series of DataSources from an xfdlFile.
TimeSeries(String, DataCollection[]) - Constructor for class edu.unh.sdb.datasource.TimeSeries
Create a time series from an array of DataCollections
TimeSeries(String, DataCollection[], float[]) - Constructor for class edu.unh.sdb.datasource.TimeSeries
Create a time series from an array of DataCollections and a time mapping
toComponent(int) - Method in class edu.unh.sdb.common.FieldIDMapper
return the component index given a composite index.
toComponent(RecordSpec) - Method in class edu.unh.sdb.common.FieldIDMapper
Returns a RecordSpec mapped to the given RecordSpec whose field numbers could be found in this.compositeFields.
toComponent(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISIDMapper
Map the IndexSpaceID argument from composite space to component space.
toComponent(IndexSpaceID, IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISIDMapper
Map the IndexSpaceID argument from composite space to component space.
toComponent(int[]) - Method in class edu.unh.sdb.datasource.ISIDMapper
Map the coords array argument from composite space to component space.
toComponent(int[], int[]) - Method in class edu.unh.sdb.datasource.ISIDMapper
Map the coords array argument from composite space to component space.
toComponent(ISBounds) - Method in class edu.unh.sdb.datasource.ISIDMapper
Map the bounds argument from composite space to component space.
toComposite(int) - Method in class edu.unh.sdb.common.FieldIDMapper
Returns the composite index given the component index.
toComposite(IndexSpaceID) - Method in class edu.unh.sdb.datasource.ISIDMapper
Map the IndexSpaceID argument from component space to composite space.
toComposite(int[]) - Method in class edu.unh.sdb.datasource.ISIDMapper
Map the coords array argument from component space to composite space.
toComposite(ISBounds) - Method in class edu.unh.sdb.datasource.ISIDMapper
Map the bounds argument from component space to composite space.
toDestination(int) - Method in class edu.unh.sdb.common.FieldIDMapper
Returns the destination index given the source index.
topoBounds - Variable in class edu.unh.sdb.lattice.UnstructuredGeometry
 
toPoint3d(Point3i) - Static method in class edu.unh.sdb.datasource.SliceUtil
 
topology - Variable in class edu.unh.sdb.lattice.Lattice
 
Topology - Class in edu.unh.sdb.lattice
 
Topology() - Constructor for class edu.unh.sdb.lattice.Topology
 
Topology(int) - Constructor for class edu.unh.sdb.lattice.Topology
 
toSource(int) - Method in class edu.unh.sdb.common.FieldIDMapper
return the source index given a destination index.
toString() - Method in class edu.unh.sdb.common.AttributeDescriptor
Returns a String representation of the AttributeDescriptor.
toString() - Method in class edu.unh.sdb.common.Bounds
Write the contents of the Bounds to a string.
toString() - Method in class edu.unh.sdb.common.ByteDatum
Return a string representation of the datum.
toString() - Method in class edu.unh.sdb.common.DoubleDatum
Return a string representation of the datum.
toString() - Method in class edu.unh.sdb.common.EulerAngles
 
toString() - Method in class edu.unh.sdb.common.FieldIDMapper
to String
toString() - Method in class edu.unh.sdb.common.FloatDatum
Return a string representation of the datum.
toString() - Method in class edu.unh.sdb.common.IntDatum
Return a string representation of the datum.
toString() - Method in class edu.unh.sdb.common.Metadata
 
toString() - Method in class edu.unh.sdb.common.MetadataCollection
 
toString() - Method in class edu.unh.sdb.common.MixedDatum
Return a string representation of the datum.
toString() - Method in class edu.unh.sdb.common.RangedType
Return a representation of this object as a nicely formatted String.
toString() - Method in class edu.unh.sdb.common.RangedTypeBuilder
diagnostic utility method for dumping this class to a string
toString() - Method in class edu.unh.sdb.common.RecordDescriptor
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.common.RecordDescriptor
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.common.RecordDescriptorBuilder
diagnostic utility method for dumping this class to a string
toString() - Method in class edu.unh.sdb.common.ShortDatum
Return a string representation of the datum.
toString() - Method in class edu.unh.sdb.common.StorageType
Return this StorageType represented as a nicely formatted String.
toString() - Method in class edu.unh.sdb.common.Type
Return a representation of this object as a nicely formatted String.
toString() - Method in class edu.unh.sdb.common.TypeBuilder
diagnostic utility method for dumping this class to a string
toString() - Method in class edu.unh.sdb.common.TypeTable
Return a representation of this object as a nicely formatted String.
toString() - Method in class edu.unh.sdb.common.UserType
Return a representation of this object as a nicely formatted String.
toString() - Method in class edu.unh.sdb.common.UserTypeBuilder
diagnostic utility method for dumping this class to a string
toString(String) - Method in class edu.unh.sdb.datasource.ARRSCell
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.ARRSCellBlockIterator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.ARRSCellBlockIterator
Return description of this ARRSCell
toString(String) - Method in class edu.unh.sdb.datasource.ARRSCellID
Return a String representing the object indented by the argument string.
toString(String) - Method in class edu.unh.sdb.datasource.ARRSCellIterator
Return description of this ARRSCell
toString() - Method in class edu.unh.sdb.datasource.ARRSTree
Print the info of a tree
toString() - Method in class edu.unh.sdb.datasource.AttributeJoinDataSource
 
toString() - Method in class edu.unh.sdb.datasource.AttributeOrderBFDS
Print the data members of the DataSource in an easy to read fashion.
toString() - Method in class edu.unh.sdb.datasource.AxisOrdering
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.AxisOrdering
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Return description of this BDISBoundsIterator
toString() - Method in class edu.unh.sdb.datasource.BinaryFileDataSource
Print the data members of the DataSource in an easy to read fashion.
toString() - Method in class edu.unh.sdb.datasource.BlockedDataSource
 
toString() - Method in class edu.unh.sdb.datasource.Cell
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.Cell
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.CellBlockIterator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.CellBlockIterator
Return description of this ARRSCell
toString() - Method in class edu.unh.sdb.datasource.CellID
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.CellID
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.CellIterator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.CellIterator
Return description of this ARRSCell
toString() - Method in class edu.unh.sdb.datasource.CompositeDataSource
Print the data members of the DataSource in an easy to read fashion.
toString() - Method in class edu.unh.sdb.datasource.DataBlock
Write the values of the entire DataBlock index space to a string in a nice format.
toString() - Method in class edu.unh.sdb.datasource.DataSource
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.DataSource
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.DataSourceBuilder
diagnostic utility method for dumping this class to a string
toString() - Method in class edu.unh.sdb.datasource.DataSourceCollection
for debugging - prints the total number of datasource collections stored.
toString() - Method in class edu.unh.sdb.datasource.DimResolution
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.DimResolution
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.DSArrayStencil
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.DSArrayStencil
 
toString() - Method in class edu.unh.sdb.datasource.DSBlockStencil
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.DSBlockStencil
 
toString() - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
 
toString() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Returns a String representation of this class
toString() - Method in class edu.unh.sdb.datasource.IndexSpaceID
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.IndexSpaceID
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.IntegerIndexSpaceID
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.ISBounds
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.ISBounds
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return description of this ISBoundsIterator
toString() - Method in class edu.unh.sdb.datasource.ISIDMapper
convert to a String representation for debugging
toString() - Method in class edu.unh.sdb.datasource.ISIterator
Return description of this ISIterator
toString() - Method in class edu.unh.sdb.datasource.ISPartitioning
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.ISPartitioning
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
toString() - Method in class edu.unh.sdb.datasource.OverlapBlockedDataSource
 
toString() - Method in class edu.unh.sdb.datasource.PackedIndexSpaceID
Return a String representing the object.
toString() - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.PhysicalDataSource
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.Plane
 
toString() - Method in class edu.unh.sdb.datasource.PointOrderBFDS
Print the data members of the DataSource in an easy to read fashion.
toString() - Method in class edu.unh.sdb.datasource.RandomBlockIterator
 
toString() - Method in class edu.unh.sdb.datasource.RegCellDataSource
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.RegularISPartitioning
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.datasource.RegularPartitionISID
Return a String representing the object.
toString() - Method in class edu.unh.sdb.datasource.Slice
 
toString() - Method in class edu.unh.sdb.datasource.SparseDataSource.MapInfo
 
toString() - Method in class edu.unh.sdb.datasource.TextFileDataSource
Print the data members of the DataSource in an easy to read fashion.
toString() - Method in class edu.unh.sdb.datasource.URCellBlock
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.URCellBlock
Return a String representing the object indented by the argument string.
toString(String) - Method in class edu.unh.sdb.datasource.URCellBlockIterator
Return description of this ARRSCell
toString() - Method in class edu.unh.sdb.datasource.URCellIterator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.datasource.URCellIterator
Return description of this ARRSCell
toString() - Method in class edu.unh.sdb.datasource.Volume
 
toString() - Method in class edu.unh.sdb.datasource.VRIndexable
Return the description of the VRDS
toString() - Method in class edu.unh.sdb.lattice.Approximator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.Approximator
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.AreaTriangleCellApproximator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.AreaTriangleCellApproximator
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.ArrayApproximator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.ArrayApproximator
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.ArrayCell
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.ArrayCell
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.Borrowed2DTriangleCell
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.Borrowed2DTriangleCell
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.Cell
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.Cell
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.CellGroup
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.CellGroup
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.CellGroupGrid
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.CellGroupGrid
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.CellID
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.CellID
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.FileArrayCellGroup
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.FileArrayCellGroup
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.FileSplitterCellGroupGrid
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.FileSplitterCellGroupGrid
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.GBounds
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.GBounds
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.GBoundsGapIterator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.GBoundsGapIterator
Return description of this GBoundsGapIterator
toString() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.GBoundsIterator
Return description of this GBoundsIterator
toString() - Method in class edu.unh.sdb.lattice.Geometry
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.Geometry
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.GIterator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.GIterator
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.Lattice
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.Lattice
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.LatticeBuilder
diagnostic utility method for dumping this class to a string
toString() - Method in class edu.unh.sdb.lattice.LatticeCollection
for debugging - prints the total number of Lattice collections stored.
toString() - Method in class edu.unh.sdb.lattice.LinearTriangleCellApproximator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.LinearTriangleCellApproximator
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.PartitionedFileArrayCellGroup
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.PartitionedSplitCellGroupGrid
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.PartitionedSplitCellGroupGrid
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.Partitioning
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.Partitioning
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.PlanarTriangleCellApproximator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.PlanarTriangleCellApproximator
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.Point
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.Point
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.RectilinearTopology
 
toString(String) - Method in class edu.unh.sdb.lattice.RectilinearTopology
 
toString() - Method in class edu.unh.sdb.lattice.RegularCellPartitioning
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.RegularCellPartitioning
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.RegularPartitioning
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.RegularPartitioning
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.SplitCellGroupGrid
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.SplitCellGroupGrid
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.Topology
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.Topology
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.TriangleCell
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.TriangleCell
Return a String representing the object indented by the argument string.
toString(String) - Method in class edu.unh.sdb.lattice.TriangleCellIterator
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.UnstructuredApproximator
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.UnstructuredApproximator
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.UnstructuredGeometry
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.UnstructuredGeometry
Return a String representing the object indented by the argument string.
toString() - Method in class edu.unh.sdb.lattice.UnstructuredTopology
Return a String representing the object.
toString(String) - Method in class edu.unh.sdb.lattice.UnstructuredTopology
Return a String representing the object indented by the argument string.
toStringIndent - Static variable in class edu.unh.sdb.common.Globals
 
toXML(String) - Method in class edu.unh.sdb.common.Metadata
returns a String representation of this Metadata object in XML form.
toXML(String) - Method in class edu.unh.sdb.common.MetadataCollection
returns a String representing this metadata collection in XML format.
TransferFunction - Class in edu.unh.sdb.datasource
 
TransferFunction() - Constructor for class edu.unh.sdb.datasource.TransferFunction
 
TransferFunction.Block - Class in edu.unh.sdb.datasource
Block of data that is read for a datasource.
TransferFunction.Block() - Constructor for class edu.unh.sdb.datasource.TransferFunction.Block
 
TransferFunction.Block(DataBlock, double, double, double) - Constructor for class edu.unh.sdb.datasource.TransferFunction.Block
 
TransferFunction.Feature - Enum in edu.unh.sdb.datasource
 
TransferFunction.Type - Enum in edu.unh.sdb.datasource
 
transform(Matrix3d) - Method in class edu.unh.sdb.datasource.Plane
 
translate(Vector3d) - Method in class edu.unh.sdb.datasource.Plane
 
transmitTime() - Method in class edu.unh.sdb.datasource.GraniteRemoteClient
 
transmitTime() - Method in class edu.unh.sdb.datasource.RemoteBFDS
 
transmitTime() - Method in class edu.unh.sdb.datasource.RemoteUDPClient
 
transmitTime() - Method in class edu.unh.sdb.datasource.RemoteUDTClient
 
tRECORDID - Static variable in class edu.unh.sdb.mdb.Table
 
tree - Variable in class edu.unh.sdb.ARRSTreeBuilder.ARRSBuilder
 
tree - Variable in class edu.unh.sdb.datasource.ARRSCellDataSource
 
treeClear() - Method in class edu.unh.sdb.datasource.ARRSTree
Clear the ARRS tree
TriangleCell - Class in edu.unh.sdb.lattice
 
TriangleCell(Point, Point, Point) - Constructor for class edu.unh.sdb.lattice.TriangleCell
For debugging.
TriangleCell() - Constructor for class edu.unh.sdb.lattice.TriangleCell
 
TriangleCell(int, int) - Constructor for class edu.unh.sdb.lattice.TriangleCell
 
TriangleCell(Point[], Datum[]) - Constructor for class edu.unh.sdb.lattice.TriangleCell
 
TriangleCell(float[], float[], int, int, int) - Constructor for class edu.unh.sdb.lattice.TriangleCell
 
TriangleCell(int[], float[], float[], int, int, int) - Constructor for class edu.unh.sdb.lattice.TriangleCell
 
TriangleCell(DataSource, DataSource, RecordSpec, RecordSpec, RecordSpec, int, IndexSpaceID) - Constructor for class edu.unh.sdb.lattice.TriangleCell
 
TriangleCellIterator - Class in edu.unh.sdb.lattice
 
TriangleCellIterator(Lattice) - Constructor for class edu.unh.sdb.lattice.TriangleCellIterator
 
trilinearInterpolation(TransferFunction.Block, Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.TransferFunction
 
trilinearInterpolation(TransferFunction.Block, IndexSpaceID, int) - Static method in class edu.unh.sdb.datasource.TransferFunction
 
triliner(float, float, float, float, float, float, float, float, float, float, float) - Method in class edu.unh.sdb.datasource.RayCellIterator
trilinear interpolation.
triListBounds - Variable in class edu.unh.sdb.lattice.UnstructuredTopology
 
tTYPEID - Static variable in class edu.unh.sdb.mdb.Table
 
tTYPENAME - Static variable in class edu.unh.sdb.mdb.Table
 
type - Variable in class edu.unh.sdb.common.RecordDescriptor.TypeCount
 
Type - Class in edu.unh.sdb.common
The Type class represents named types in the SDB system.
Type(String) - Constructor for class edu.unh.sdb.common.Type
 
Type() - Constructor for class edu.unh.sdb.common.Type
 
TYPE - Static variable in class edu.unh.sdb.mdb.Table
define table name
TypeBuilder - Class in edu.unh.sdb.common
Manufactures Type objects.
TypeBuilder(String) - Constructor for class edu.unh.sdb.common.TypeBuilder
Default Constructor.
typeCounters - Variable in class edu.unh.sdb.common.RecordDescriptor
 
types - Variable in class edu.unh.sdb.common.RecordDescriptor
 
typeStringtoInt(String) - Static method in class edu.unh.sdb.common.StorageType
Returns a valid type constant if the String argument is a valid type string.
TypeTable - Class in edu.unh.sdb.common
The TypeTable class keeps track of user defined types in an internal data structure.
TypeTable() - Constructor for class edu.unh.sdb.common.TypeTable
Default constructor.
TypeTable(int) - Constructor for class edu.unh.sdb.common.TypeTable
This constructor allows an initial capacity to be specified.

U

ubounds - Variable in class edu.unh.sdb.datasource.ISBoundsIterator
 
UDP - Static variable in class edu.unh.sdb.common.Globals
 
UDT - Static variable in class edu.unh.sdb.common.Globals
 
Undefined - Static variable in class edu.unh.sdb.common.StorageType
 
UniBlockCacheDataSource - Class in edu.unh.sdb.datasource
The UniBlockCacheDataSource provides cache service for an underlying datasource.
UniBlockCacheDataSource(String, DataSource, ISBounds, IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.UniBlockCacheDataSource
Create a UniBlockCacheDataSource with a single CacheBlock connected to the DataSource argument.
UniBlockCacheDataSource(String, DataSource, IndexSpaceID) - Constructor for class edu.unh.sdb.datasource.UniBlockCacheDataSource
Create a UniBlockCacheDataSource with a single CacheBlock connected to the DataSource argument.
Unsigned_Byte - Static variable in class edu.unh.sdb.common.StorageType
 
Unsigned_Short - Static variable in class edu.unh.sdb.common.StorageType
 
UnsignedByte - Static variable in class edu.unh.sdb.common.StorageType
 
UnsignedShort - Static variable in class edu.unh.sdb.common.StorageType
 
UNSTRUCTURED_GEOMETRY - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote unstructured topology
UNSTRUCTURED_TOPOLOGY - Static variable in class edu.unh.sdb.lattice.LatticeBuilder
declare constants to denote unstructured topology
UnstructuredApproximator - Class in edu.unh.sdb.lattice
 
UnstructuredApproximator() - Constructor for class edu.unh.sdb.lattice.UnstructuredApproximator
 
UnstructuredCell - Class in edu.unh.sdb.lattice
 
UnstructuredCell() - Constructor for class edu.unh.sdb.lattice.UnstructuredCell
 
UnstructuredCell(Point[], Datum[]) - Constructor for class edu.unh.sdb.lattice.UnstructuredCell
 
UnstructuredCell(int, int, int) - Constructor for class edu.unh.sdb.lattice.UnstructuredCell
 
UnstructuredCell(DataSource, DataSource, RecordSpec, RecordSpec, RecordSpec, int, int, IndexSpaceID) - Constructor for class edu.unh.sdb.lattice.UnstructuredCell
 
UnstructuredGeometry - Class in edu.unh.sdb.lattice
 
UnstructuredGeometry(ISBounds, GBounds) - Constructor for class edu.unh.sdb.lattice.UnstructuredGeometry
 
UnstructuredGeometry(ISBounds, GBounds, AxisOrdering) - Constructor for class edu.unh.sdb.lattice.UnstructuredGeometry
 
UnstructuredSplitterTopology - Class in edu.unh.sdb.lattice
 
UnstructuredSplitterTopology(String, String, UnstructuredGeometry, int) - Constructor for class edu.unh.sdb.lattice.UnstructuredSplitterTopology
 
UnstructuredTopology - Class in edu.unh.sdb.lattice
 
UnstructuredTopology(String, String, UnstructuredGeometry, int) - Constructor for class edu.unh.sdb.lattice.UnstructuredTopology
 
update(Metadata) - Method in class edu.unh.sdb.common.MetadataCollection
If the collection does not already contain a Metadata object with the same name as argument, then the argument is added to the collection.
updateMembers() - Method in class edu.unh.sdb.datasource.MRDataSource
upDateMembers copies the key information from the current DS to data members of the MRDS.
upper - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
upper - Variable in class edu.unh.sdb.datasource.ISBounds
 
upper - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
upper - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
upper - Variable in class edu.unh.sdb.lattice.GBounds
 
upperAxes - Variable in class edu.unh.sdb.datasource.XDDLReader
interim upper bounds specifications
upperPartitioningArray - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
upperPartitioningArray - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
upperQueryCoords - Variable in class edu.unh.sdb.datasource.ThreadedSliceCache
 
upperSpaceArray - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
upperSpaceArray - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
urCellBlock(ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Return a cell block with the specified bounds and the specified resolution
urCellBlock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellBlock
Fill in a cell block with the specified bounds and the specified resolution.
urCellBlock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellCopyDS
Return a cell block with the specified bounds and the specified resolution
urCellBlock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Return a cell block with the specified bounds and the specified resolution
urCellBlock(DataBlock, ISBounds, ISBounds) - Method in interface edu.unh.sdb.datasource.CellIndexable
 
urCellBlock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.RegCellDataSource
Return a cell block with the specified resolution and the specified bounds
URCellBlock - Class in edu.unh.sdb.datasource
 
URCellBlock() - Constructor for class edu.unh.sdb.datasource.URCellBlock
Construct a URCellBlock without arguments
URCellBlock(ISBounds, AxisOrdering, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.URCellBlock
Construct a URCellBlock with the given bounds, axis axisOrdering and RecordDescriptor.
URCellBlock(ISBounds, RecordDescriptor) - Constructor for class edu.unh.sdb.datasource.URCellBlock
Construct a URCellBlock with the given bounds and number of attributes
URCellBlock(DataBlock) - Constructor for class edu.unh.sdb.datasource.URCellBlock
Construct a URCellBlock with a given URCellBlock
urCellBlock(ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.URCellBlock
Return a cell block with the specified bounds and the specified resolution
urCellBlock(DataBlock, ISBounds, ISBounds) - Method in class edu.unh.sdb.datasource.URCellBlock
Fill a cell block with the specified resolution and the specified bounds
URCellBlockIterator - Class in edu.unh.sdb.datasource
 
URCellBlockIterator(CellIndexable, ISBounds, int[], int[]) - Constructor for class edu.unh.sdb.datasource.URCellBlockIterator
construction with a cell block
URCellIterator - Class in edu.unh.sdb.datasource
 
URCellIterator(CellIndexable) - Constructor for class edu.unh.sdb.datasource.URCellIterator
Constructor takes an uniform cell block
url - Variable in class edu.unh.sdb.datasource.PhysicalDataSource
 
url - Variable in class edu.unh.sdb.mdb.PDSDescriptor
 
URL - Class in edu.unh.sdb.mdb
 
URL(String, String, String, String) - Constructor for class edu.unh.sdb.mdb.URL
 
URL(String, String, String, int) - Constructor for class edu.unh.sdb.mdb.URL
 
useBytesOnly() - Method in class edu.unh.sdb.datasource.CacheDataSource
When this method is called, this subblock methods of this collection will read data as bytes, without performing any type conversion.
useBytesOnly() - Method in class edu.unh.sdb.datasource.ChomboDataSource
When this method is called, this subblock methods of this collection will read data as bytes, without performing any type conversion.
useBytesOnly() - Method in class edu.unh.sdb.datasource.CompositeDataSource
When this method is called, the subblock methods of this collection will read data as bytes, without performing any type conversion.
useBytesOnly() - Method in class edu.unh.sdb.datasource.DataCollection
When this method is called, this subblock methods of this collection will read data as bytes, without performing any type conversion.
useCubicForOblique - Static variable in class edu.unh.sdb.datasource.CacheMaker
 
useIsometricCubicForOblique - Static variable in class edu.unh.sdb.datasource.CacheMaker
 
userHome - Variable in class edu.unh.sdb.common.Configuration
 
userName - Variable in class edu.unh.sdb.mdb.URL
 
UserType - Class in edu.unh.sdb.common
The UserType class represents user defined types in the SDB system.
UserType(String, int) - Constructor for class edu.unh.sdb.common.UserType
 
UserTypeBuilder - Class in edu.unh.sdb.common
Manufactures UserType objects.
UserTypeBuilder(String, int) - Constructor for class edu.unh.sdb.common.UserTypeBuilder
 
UserTypeBuilder(String, String) - Constructor for class edu.unh.sdb.common.UserTypeBuilder
 

V

valid() - Method in interface edu.unh.sdb.common.SDBIterator
Return true if the iterator currently has a valid value, false otherwise.
valid() - Method in class edu.unh.sdb.datasource.BDISBoundsIterator
Return true if the current position is a valid position in the IndexSpace.
valid - Variable in class edu.unh.sdb.datasource.CellBlockIterator
 
valid() - Method in class edu.unh.sdb.datasource.CellBlockIterator
Return true if the current position is valid
valid - Variable in class edu.unh.sdb.datasource.CellIterator
 
valid() - Method in class edu.unh.sdb.datasource.CellIterator
Return true if the current position is valid
valid() - Method in class edu.unh.sdb.datasource.DSPartitionedStencilIterator
Return true if the iterator currently has a valid value, false otherwise.
valid() - Method in class edu.unh.sdb.datasource.DSThreadedPartitionedStencilIterator
Return true if the iterator currently has a valid value, false otherwise.
valid - Variable in class edu.unh.sdb.datasource.ISBoundsIterator
 
valid() - Method in class edu.unh.sdb.datasource.ISBoundsIterator
Return true if the current position is a valid position in the IndexSpace.
valid() - Method in class edu.unh.sdb.datasource.ISIterator
Return true if the current position is a valid position in the IndexSpace.
valid - Variable in class edu.unh.sdb.datasource.ObliquePlaneIterator
 
valid() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return true if the iterator currently has a valid value, false otherwise.
valid() - Method in class edu.unh.sdb.datasource.RayCastingIterator
 
valid() - Method in class edu.unh.sdb.datasource.RayIterator
 
valid() - Method in class edu.unh.sdb.datasource.SliceIterator
 
valid() - Method in class edu.unh.sdb.lattice.GBoundsGapIterator
Return true if the current position is a valid position in the IndexSpace.
valid() - Method in class edu.unh.sdb.lattice.GBoundsIterator
Return true if the current position is a valid position in the IndexSpace.
valid() - Method in class edu.unh.sdb.lattice.GIterator
Return true if the current position is a valid position in the IndexSpace.
valid() - Method in class edu.unh.sdb.lattice.TriangleCellIterator
 
validPosition(Volume) - Method in class edu.unh.sdb.datasource.Plane
 
valueOf(String) - Static method in enum edu.unh.sdb.common.EulerAngles.Angle
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.unh.sdb.datasource.TransferFunction.Feature
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum edu.unh.sdb.datasource.TransferFunction.Type
Returns the enum constant of this type with the specified name.
values() - Static method in enum edu.unh.sdb.common.EulerAngles.Angle
Returns an array containing the constants of this enum type, in the order they are declared.
Values - Class in edu.unh.sdb.common
 
Values() - Constructor for class edu.unh.sdb.common.Values
 
values() - Static method in enum edu.unh.sdb.datasource.TransferFunction.Feature
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum edu.unh.sdb.datasource.TransferFunction.Type
Returns an array containing the constants of this enum type, in the order they are declared.
vAttrFDLD - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
vectorFromHeadingPitch() - Method in class edu.unh.sdb.common.EulerAngles
 
vectorToFloatArray(Vector) - Static method in class edu.unh.sdb.common.XMLReader
converts a vector to an array of floats and defaults to a 1 item array of 0 if vector is empty
vectorToIntArray(Vector) - Static method in class edu.unh.sdb.common.XMLReader
converts a vector to an array of integers
vectorToIntArray(ArrayList) - Static method in class edu.unh.sdb.common.XMLReader
converts a vector to an array of integers
vectorToIntArray(Vector) - Static method in class edu.unh.sdb.datasource.DataSourceBuilder
makes an integer array out of a vector
verbose - Variable in class edu.unh.sdb.common.XMLReader
flag to set verbose on/off
vertexIndicesFileName - Variable in class edu.unh.sdb.lattice.FDLGroup
 
vertices - Variable in class edu.unh.sdb.datasource.Cell
 
vIndexFdlName - Variable in class edu.unh.sdb.lattice.FileCellGroup
 
vIndices - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
vIndices - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroup
 
vIndices - Variable in class edu.unh.sdb.lattice.InCoreArrayCellGroupGrid
 
vIndicesRD - Variable in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
vIndicesRS - Variable in class edu.unh.sdb.lattice.FileCellGroup
 
vInfoFDLD - Variable in class edu.unh.sdb.lattice.FileArrayCellGroup
 
vInfoFdlName - Variable in class edu.unh.sdb.lattice.FileCellGroup
 
volume() - Method in class edu.unh.sdb.datasource.ARBlock
Return the number of elements in the datablock.
volume() - Method in class edu.unh.sdb.datasource.ARRSCellDataSource
Size of the ARRSCellDataSource -- not implemented
volume() - Method in class edu.unh.sdb.datasource.DataCollection
Returns the number of elements in this datasource index space.
volume() - Method in class edu.unh.sdb.datasource.DSPartitionedStencil
Computes the volume of the stencil partitioning space.
volume() - Method in class edu.unh.sdb.datasource.IndexSpaceID
 
volume() - Method in class edu.unh.sdb.datasource.ISBounds
Return the total volume of the ISBounds as an integer.
volume() - Method in class edu.unh.sdb.datasource.ISPartitioning
Return the total number of partitions.
volume() - Method in class edu.unh.sdb.datasource.ObliquePlaneIterator
Return the number of elements in the datablock.
volume() - Method in class edu.unh.sdb.datasource.RectCellBlock
Size of the CellBlock The size is the size of the volume it represents in points.
Volume - Class in edu.unh.sdb.datasource
A volume that can be intersected with a Plane.
Volume(Point3d, Point3d) - Constructor for class edu.unh.sdb.datasource.Volume
Creates a new instance of VolumeInfo
Volume(ISBounds) - Constructor for class edu.unh.sdb.datasource.Volume
 
volume() - Method in class edu.unh.sdb.datasource.VRDataBlock
 
volume() - Method in class edu.unh.sdb.lattice.GBounds
Return the total volume of the GBounds as an integer.
VRDataBlock - Class in edu.unh.sdb.datasource
 
VRDataBlock(DataBlock) - Constructor for class edu.unh.sdb.datasource.VRDataBlock
 
VRDataSource - Class in edu.unh.sdb.datasource
 
VRDataSource(String, DataSource) - Constructor for class edu.unh.sdb.datasource.VRDataSource
 
VRDataSourceBuilder - Class in edu.unh.sdb.datasource
Manufactures Logical VRDataSource objects.
VRDataSourceBuilder(DataSourceCollection, String) - Constructor for class edu.unh.sdb.datasource.VRDataSourceBuilder
Default Constructor sets the bounds and recordDesc members to default values.
vrIndexable - Variable in class edu.unh.sdb.datasource.VRDataBlock
 
vrIndexable - Variable in class edu.unh.sdb.datasource.VRDataSource
 
VRIndexable - Class in edu.unh.sdb.datasource
VRIndexable provides different resolution view of the datasource.
VRIndexable(DataCollection) - Constructor for class edu.unh.sdb.datasource.VRIndexable
Construct a VRDataSource from any source datasource.
VRIndexable(DataCollection, int) - Constructor for class edu.unh.sdb.datasource.VRIndexable
Construct a VRdataSource and set it to a certain resolution level.
VRIndexable(DataCollection, ISBounds) - Constructor for class edu.unh.sdb.datasource.VRIndexable
Construct a VRdataSource and set its resolution corresponding to the given ISBounds argument.

W

wait(int) - Static method in class edu.unh.sdb.datasource.RemoteUDPClient.InterPacketDelay
 
Warning - Static variable in class edu.unh.sdb.common.SDBError
 
warning(SAXParseException) - Method in class edu.unh.sdb.common.XMLErrorHandler
 
welcomeSocket - Static variable in class edu.unh.sdb.datasource.GraniteRemoteClient
 
welcomeSocket - Static variable in class edu.unh.sdb.datasource.RemoteUDPClient
 
welcomeSocket - Static variable in class edu.unh.sdb.datasource.RemoteUDTClient
 
WorkSpace - Class in edu.unh.sdb.common
The WorkSpace class is a container holding the various objects that an SDB user will require during an SDB work session.
WorkSpace(URL) - Constructor for class edu.unh.sdb.common.WorkSpace
 
WorkSpace(String) - Constructor for class edu.unh.sdb.common.WorkSpace
 
WorkSpace(String, TypeTable) - Constructor for class edu.unh.sdb.common.WorkSpace
 
WorkSpace(String, DataSourceCollection) - Constructor for class edu.unh.sdb.common.WorkSpace
 
WorkSpace(String, DataSourceCollection, TypeTable) - Constructor for class edu.unh.sdb.common.WorkSpace
 
WorkSpaceManager - Class in edu.unh.sdb.common
The WorkSpaceManager class is an abstract class meant to be used in a static context only.
WorkSpaceManager() - Constructor for class edu.unh.sdb.common.WorkSpaceManager
 
write(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.BufferedOneDDataSink
 
write(Datum) - Method in class edu.unh.sdb.datasource.BufferedOneDDataSink
 
write(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.DataSink
 
write(Datum) - Method in class edu.unh.sdb.datasource.OneDDataSink
 
write(Datum, IndexSpaceID) - Method in class edu.unh.sdb.datasource.OneDDataSink
 
write(OneDDataSink) - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroup
 
write(String) - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroupGrid
 
WriteableInCoreArrayCellGroup - Class in edu.unh.sdb.lattice
 
WriteableInCoreArrayCellGroup(GBounds) - Constructor for class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroup
 
WriteableInCoreArrayCellGroupGrid - Class in edu.unh.sdb.lattice
 
WriteableInCoreArrayCellGroupGrid(Partitioning, AxisOrdering) - Constructor for class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroupGrid
 
writeBuffer() - Method in class edu.unh.sdb.datasource.BufferedOneDDataSink
 
writeCells(String) - Method in class edu.unh.sdb.lattice.FileArrayCellGroup
 
writeCells(String) - Method in class edu.unh.sdb.lattice.FileCellGroup
 
writeCells() - Method in class edu.unh.sdb.lattice.FileCellGroupGrid
 
writeCells(String) - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
writeCells() - Method in class edu.unh.sdb.lattice.FileSplitterCellGroupGrid
 
writeCells() - Method in class edu.unh.sdb.lattice.SplitCellGroupGrid
 
writeCells() - Method in class edu.unh.sdb.lattice.UnstructuredSplitterTopology
 
writeDS(String, WorkSpace) - Method in class edu.unh.sdb.mdb.DBIF
write meta data from WorkSpace to database
writeFDL() - Method in class edu.unh.sdb.datasource.FDLDescriptor
Write a .xfdl formatted file to the file that is represented by this FDLDescriptor.
writeFDL(File) - Method in class edu.unh.sdb.datasource.FDLDescriptor
Write a .xfdl formatted file to the file specified which includes all the attributes in this FDLDescriptor.
writeFDLFile(String) - Method in class edu.unh.sdb.lattice.WriteableInCoreArrayCellGroupGrid
 
writeHeader(byte[], DSPartitionedStencil) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
writeHyperslab(double[], int, long[], long[], int) - Method in class edu.unh.sdb.datasource.ChomboDataSource
 
writeTriangles(ArrayList, OneDDataSink, OneDDataSink, OneDDataSink, FileSplitterCellGroup.AList, int) - Method in class edu.unh.sdb.lattice.FileSplitterCellGroup
 
writeWorkSpace(WorkSpace) - Method in class edu.unh.sdb.mdb.DBIF
write meta data from WorkSpace to database
wsName - Variable in class edu.unh.sdb.datasource.DataSource
 

X

X_AXIS - Static variable in class edu.unh.sdb.datasource.SliceUtil
 
XDDLReader - Class in edu.unh.sdb.datasource
 
XDDLReader(String, boolean) - Constructor for class edu.unh.sdb.datasource.XDDLReader
Takes an argument name of a file or URL as a String and a verbose indicator
XDDLReader(String) - Constructor for class edu.unh.sdb.datasource.XDDLReader
Takes an argument name of a file or URL as a String and sets verbose to false
XFDLReader - Class in edu.unh.sdb.datasource
 
XFDLReader(String) - Constructor for class edu.unh.sdb.datasource.XFDLReader
Create an XFDLReader for the file designated by the argument
XFDLReader(String, boolean) - Constructor for class edu.unh.sdb.datasource.XFDLReader
XML version of a File Description Language Reader.
XLDLReader - Class in edu.unh.sdb.lattice
 
XLDLReader(String, boolean, DataSourceCollection) - Constructor for class edu.unh.sdb.lattice.XLDLReader
Takes an argument name of a file or URL as a String, a verbose indicator and a data source list
XLDLReader(String, boolean) - Constructor for class edu.unh.sdb.lattice.XLDLReader
Takes an argument name of a file or URL as a String and a verbose indicator
XLDLReader(String) - Constructor for class edu.unh.sdb.lattice.XLDLReader
Takes an argument name of a file or URL as a String and sets verbose to false
XMLEntityResolver - Class in edu.unh.sdb.common
 
XMLEntityResolver() - Constructor for class edu.unh.sdb.common.XMLEntityResolver
 
XMLErrorHandler - Class in edu.unh.sdb.common
 
XMLErrorHandler() - Constructor for class edu.unh.sdb.common.XMLErrorHandler
 
XMLReader - Class in edu.unh.sdb.common
 
XMLReader(String, boolean) - Constructor for class edu.unh.sdb.common.XMLReader
Takes an argument name of a file or URL as a String and verbose indicator
XMLReader(String) - Constructor for class edu.unh.sdb.common.XMLReader
Takes an argument name of a file or URL as a String
XMLReaderError - Class in edu.unh.sdb.common
This error is created whenever there is a problem communicating with the XMLReader.
XMLReaderError(int, String) - Constructor for class edu.unh.sdb.common.XMLReaderError
Create an error with the specified error level and message.
XMLReaderException - Exception in edu.unh.sdb.common
If this exception is thrown, there is a problem communicating with the XMLReader.
XTDLReader - Class in edu.unh.sdb.datasource
 
XTDLReader(String, boolean) - Constructor for class edu.unh.sdb.datasource.XTDLReader
Takes an argument name of a file or URL as a String and a verbose indicator
XTDLReader(String) - Constructor for class edu.unh.sdb.datasource.XTDLReader
Takes an argument name of a file and default to non-verbose

Y

Y_AXIS - Static variable in class edu.unh.sdb.datasource.SliceUtil
 

Z

Z_AXIS - Static variable in class edu.unh.sdb.datasource.SliceUtil
 
ZERO - Static variable in class edu.unh.sdb.datasource.SliceUtil
 
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